Strain Fitness in Rahnella sp. WP5 around EX31_RS24340

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS24335 and EX31_RS24340 are separated by 67 nucleotidesEX31_RS24340 and EX31_RS24345 are separated by 64 nucleotides EX31_RS24335: EX31_RS24335 - rhodanese-related sulfurtransferase, at 632,735 to 633,790 _RS24335 EX31_RS24340: EX31_RS24340 - YceI family protein, at 633,858 to 634,433 _RS24340 EX31_RS24345: EX31_RS24345 - cytochrome b, at 634,498 to 635,043 _RS24345 Position (kb) 633 634 635Strain fitness (log2 ratio) -3 -2 -1 0 1at 632.895 kb on + strand, within EX31_RS24335at 632.895 kb on + strand, within EX31_RS24335at 632.909 kb on + strand, within EX31_RS24335at 632.909 kb on + strand, within EX31_RS24335at 632.910 kb on - strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.043 kb on + strand, within EX31_RS24335at 633.165 kb on + strand, within EX31_RS24335at 633.165 kb on + strand, within EX31_RS24335at 633.165 kb on + strand, within EX31_RS24335at 633.209 kb on + strand, within EX31_RS24335at 633.209 kb on + strand, within EX31_RS24335at 633.235 kb on + strand, within EX31_RS24335at 633.307 kb on + strand, within EX31_RS24335at 633.308 kb on - strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.329 kb on + strand, within EX31_RS24335at 633.330 kb on - strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.368 kb on + strand, within EX31_RS24335at 633.369 kb on - strand, within EX31_RS24335at 633.369 kb on - strand, within EX31_RS24335at 633.389 kb on - strand, within EX31_RS24335at 633.398 kb on + strand, within EX31_RS24335at 633.399 kb on - strand, within EX31_RS24335at 633.415 kb on + strand, within EX31_RS24335at 633.418 kb on + strand, within EX31_RS24335at 633.496 kb on + strand, within EX31_RS24335at 633.496 kb on + strand, within EX31_RS24335at 633.565 kb on + strand, within EX31_RS24335at 633.565 kb on + strand, within EX31_RS24335at 633.655 kb on + strand, within EX31_RS24335at 633.766 kb on + strandat 633.802 kb on - strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.840 kb on + strandat 633.841 kb on - strandat 633.859 kb on + strandat 633.859 kb on + strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.860 kb on - strandat 633.870 kb on + strandat 633.871 kb on - strandat 633.871 kb on - strandat 633.888 kb on - strandat 633.926 kb on + strand, within EX31_RS24340at 633.929 kb on + strand, within EX31_RS24340at 633.930 kb on - strand, within EX31_RS24340at 633.930 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.020 kb on - strand, within EX31_RS24340at 634.209 kb on - strand, within EX31_RS24340at 634.277 kb on + strand, within EX31_RS24340at 634.277 kb on + strand, within EX31_RS24340at 634.328 kb on + strand, within EX31_RS24340at 634.451 kb on + strandat 634.460 kb on + strandat 634.461 kb on - strandat 634.461 kb on - strandat 634.461 kb on - strandat 634.461 kb on - strandat 634.471 kb on + strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.472 kb on - strandat 634.475 kb on + strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.476 kb on - strandat 634.800 kb on - strand, within EX31_RS24345at 634.831 kb on - strand, within EX31_RS24345at 634.887 kb on + strand, within EX31_RS24345at 634.888 kb on - strand, within EX31_RS24345at 634.888 kb on - strand, within EX31_RS24345at 634.892 kb on - strand, within EX31_RS24345at 634.892 kb on - strand, within EX31_RS24345at 634.923 kb on - strand, within EX31_RS24345at 634.926 kb on - strand, within EX31_RS24345at 634.926 kb on - strand, within EX31_RS24345at 634.968 kb on - strand, within EX31_RS24345at 635.043 kb on + strandat 635.202 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
remove
632,895 + EX31_RS24335 0.15 +0.2
632,895 + EX31_RS24335 0.15 -0.7
632,909 + EX31_RS24335 0.16 -0.3
632,909 + EX31_RS24335 0.16 +1.5
632,910 - EX31_RS24335 0.17 +0.3
633,043 + EX31_RS24335 0.29 +0.1
633,043 + EX31_RS24335 0.29 +0.1
633,043 + EX31_RS24335 0.29 -0.5
633,043 + EX31_RS24335 0.29 -1.0
633,165 + EX31_RS24335 0.41 +0.0
633,165 + EX31_RS24335 0.41 -1.4
633,165 + EX31_RS24335 0.41 -0.6
633,209 + EX31_RS24335 0.45 -1.7
633,209 + EX31_RS24335 0.45 -0.2
633,235 + EX31_RS24335 0.47 -0.3
633,307 + EX31_RS24335 0.54 -0.1
633,308 - EX31_RS24335 0.54 -0.9
633,329 + EX31_RS24335 0.56 -0.5
633,329 + EX31_RS24335 0.56 +0.2
633,329 + EX31_RS24335 0.56 -0.4
633,329 + EX31_RS24335 0.56 +0.0
633,329 + EX31_RS24335 0.56 -0.2
633,329 + EX31_RS24335 0.56 +0.4
633,329 + EX31_RS24335 0.56 -0.5
633,329 + EX31_RS24335 0.56 -0.1
633,330 - EX31_RS24335 0.56 +0.1
633,368 + EX31_RS24335 0.60 +0.0
633,368 + EX31_RS24335 0.60 -0.7
633,368 + EX31_RS24335 0.60 +0.3
633,368 + EX31_RS24335 0.60 +0.1
633,368 + EX31_RS24335 0.60 +0.7
633,368 + EX31_RS24335 0.60 +0.1
633,368 + EX31_RS24335 0.60 +0.1
633,368 + EX31_RS24335 0.60 +0.2
633,368 + EX31_RS24335 0.60 +0.8
633,368 + EX31_RS24335 0.60 -0.1
633,368 + EX31_RS24335 0.60 -1.0
633,368 + EX31_RS24335 0.60 -0.2
633,368 + EX31_RS24335 0.60 -0.1
633,368 + EX31_RS24335 0.60 -0.7
633,368 + EX31_RS24335 0.60 +0.1
633,368 + EX31_RS24335 0.60 +0.1
633,368 + EX31_RS24335 0.60 -0.2
633,368 + EX31_RS24335 0.60 -0.2
633,369 - EX31_RS24335 0.60 -0.8
633,369 - EX31_RS24335 0.60 -1.1
633,389 - EX31_RS24335 0.62 +1.1
633,398 + EX31_RS24335 0.63 -3.7
633,399 - EX31_RS24335 0.63 +0.5
633,415 + EX31_RS24335 0.64 +0.0
633,418 + EX31_RS24335 0.65 -0.1
633,496 + EX31_RS24335 0.72 +0.1
633,496 + EX31_RS24335 0.72 +0.4
633,565 + EX31_RS24335 0.79 +0.7
633,565 + EX31_RS24335 0.79 +0.2
633,655 + EX31_RS24335 0.87 +0.5
633,766 + +1.1
633,802 - -1.3
633,840 + +0.4
633,840 + -1.3
633,840 + -0.2
633,840 + -0.2
633,841 - +0.7
633,859 + -1.7
633,859 + +1.0
633,860 - -0.3
633,860 - -0.1
633,860 - +0.0
633,860 - +0.1
633,860 - -0.1
633,860 - +1.0
633,860 - -0.3
633,860 - -0.2
633,870 + +0.8
633,871 - -0.3
633,871 - -0.1
633,888 - +1.2
633,926 + EX31_RS24340 0.12 +0.4
633,929 + EX31_RS24340 0.12 +0.6
633,930 - EX31_RS24340 0.12 +0.1
633,930 - EX31_RS24340 0.12 +1.2
634,020 - EX31_RS24340 0.28 +0.6
634,020 - EX31_RS24340 0.28 +0.4
634,020 - EX31_RS24340 0.28 -0.2
634,020 - EX31_RS24340 0.28 -0.7
634,209 - EX31_RS24340 0.61 +0.2
634,277 + EX31_RS24340 0.73 +0.4
634,277 + EX31_RS24340 0.73 +0.6
634,328 + EX31_RS24340 0.82 +0.6
634,451 + +0.8
634,460 + +0.9
634,461 - -0.1
634,461 - +1.5
634,461 - +0.9
634,461 - +1.0
634,471 + -0.6
634,472 - -1.0
634,472 - +1.2
634,472 - -1.1
634,472 - +0.6
634,472 - -0.0
634,475 + -0.0
634,476 - +0.1
634,476 - +0.8
634,476 - -0.3
634,476 - -0.6
634,476 - -1.0
634,476 - -0.3
634,800 - EX31_RS24345 0.55 +0.4
634,831 - EX31_RS24345 0.61 +0.3
634,887 + EX31_RS24345 0.71 -2.3
634,888 - EX31_RS24345 0.71 -0.2
634,888 - EX31_RS24345 0.71 -0.8
634,892 - EX31_RS24345 0.72 -0.3
634,892 - EX31_RS24345 0.72 -2.8
634,923 - EX31_RS24345 0.78 +0.4
634,926 - EX31_RS24345 0.78 -1.3
634,926 - EX31_RS24345 0.78 -1.1
634,968 - EX31_RS24345 0.86 +1.1
635,043 + -0.6
635,202 - -0.4

Or see this region's nucleotide sequence