Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23955 and EX31_RS23960 are separated by 42 nucleotides EX31_RS23960 and EX31_RS23965 are separated by 20 nucleotides EX31_RS23965 and EX31_RS23970 overlap by 1 nucleotides
EX31_RS23955: EX31_RS23955 - drug/metabolite exporter YedA, at 560,504 to 561,421
_RS23955
EX31_RS23960: EX31_RS23960 - DUF3833 domain-containing protein, at 561,464 to 562,000
_RS23960
EX31_RS23965: EX31_RS23965 - hypothetical protein, at 562,021 to 562,548
_RS23965
EX31_RS23970: EX31_RS23970 - DUF2878 domain-containing protein, at 562,548 to 563,048
_RS23970
Position (kb) 561
562
563 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 560.481 kb on + strand at 560.492 kb on + strand at 560.492 kb on + strand at 560.493 kb on - strand at 560.493 kb on - strand at 560.497 kb on + strand at 560.497 kb on + strand at 560.498 kb on - strand at 560.498 kb on - strand at 560.503 kb on + strand at 560.503 kb on + strand at 560.504 kb on - strand at 560.538 kb on + strand at 560.538 kb on + strand at 560.539 kb on - strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.561 kb on + strand at 560.562 kb on - strand at 560.562 kb on - strand at 560.659 kb on + strand, within EX31_RS23955 at 560.733 kb on + strand, within EX31_RS23955 at 560.737 kb on + strand, within EX31_RS23955 at 560.737 kb on + strand, within EX31_RS23955 at 560.737 kb on + strand, within EX31_RS23955 at 560.737 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.785 kb on + strand, within EX31_RS23955 at 560.786 kb on - strand, within EX31_RS23955 at 560.786 kb on - strand, within EX31_RS23955 at 560.786 kb on - strand, within EX31_RS23955 at 560.929 kb on + strand, within EX31_RS23955 at 560.929 kb on + strand, within EX31_RS23955 at 560.930 kb on - strand, within EX31_RS23955 at 560.933 kb on - strand, within EX31_RS23955 at 560.933 kb on - strand, within EX31_RS23955 at 561.171 kb on + strand, within EX31_RS23955 at 561.171 kb on + strand, within EX31_RS23955 at 561.172 kb on - strand, within EX31_RS23955 at 561.200 kb on + strand, within EX31_RS23955 at 561.200 kb on + strand, within EX31_RS23955 at 561.200 kb on + strand, within EX31_RS23955 at 561.201 kb on - strand, within EX31_RS23955 at 561.201 kb on - strand, within EX31_RS23955 at 561.201 kb on - strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.202 kb on + strand, within EX31_RS23955 at 561.245 kb on + strand, within EX31_RS23955 at 561.245 kb on + strand, within EX31_RS23955 at 561.245 kb on + strand, within EX31_RS23955 at 561.245 kb on + strand, within EX31_RS23955 at 561.245 kb on + strand, within EX31_RS23955 at 561.245 kb on + strand, within EX31_RS23955 at 561.245 kb on + strand, within EX31_RS23955 at 561.246 kb on - strand, within EX31_RS23955 at 561.251 kb on + strand, within EX31_RS23955 at 561.251 kb on + strand, within EX31_RS23955 at 561.251 kb on + strand, within EX31_RS23955 at 561.251 kb on + strand, within EX31_RS23955 at 561.251 kb on + strand, within EX31_RS23955 at 561.251 kb on + strand, within EX31_RS23955 at 561.252 kb on - strand, within EX31_RS23955 at 561.252 kb on - strand, within EX31_RS23955 at 561.388 kb on + strand at 561.388 kb on + strand at 561.389 kb on - strand at 561.605 kb on + strand, within EX31_RS23960 at 561.619 kb on - strand, within EX31_RS23960 at 561.619 kb on - strand, within EX31_RS23960 at 561.690 kb on + strand, within EX31_RS23960 at 561.690 kb on + strand, within EX31_RS23960 at 561.690 kb on + strand, within EX31_RS23960 at 561.690 kb on + strand, within EX31_RS23960 at 561.691 kb on - strand, within EX31_RS23960 at 561.691 kb on - strand, within EX31_RS23960 at 561.691 kb on - strand, within EX31_RS23960 at 561.691 kb on - strand, within EX31_RS23960 at 561.838 kb on - strand, within EX31_RS23960 at 561.838 kb on - strand, within EX31_RS23960 at 561.926 kb on - strand, within EX31_RS23960 at 561.935 kb on - strand, within EX31_RS23960 at 561.947 kb on + strand at 561.948 kb on - strand at 562.000 kb on + strand at 562.001 kb on - strand at 562.001 kb on - strand at 562.001 kb on - strand at 562.011 kb on + strand at 562.011 kb on + strand at 562.011 kb on + strand at 562.011 kb on + strand at 562.011 kb on + strand at 562.011 kb on + strand at 562.023 kb on - strand at 562.057 kb on + strand at 562.058 kb on - strand at 562.067 kb on + strand at 562.286 kb on - strand, within EX31_RS23965 at 562.352 kb on + strand, within EX31_RS23965 at 562.391 kb on + strand, within EX31_RS23965 at 562.391 kb on + strand, within EX31_RS23965 at 562.391 kb on + strand, within EX31_RS23965 at 562.391 kb on + strand, within EX31_RS23965 at 562.395 kb on + strand, within EX31_RS23965 at 562.395 kb on + strand, within EX31_RS23965 at 562.424 kb on + strand, within EX31_RS23965 at 562.642 kb on + strand, within EX31_RS23970 at 562.643 kb on - strand, within EX31_RS23970 at 562.690 kb on + strand, within EX31_RS23970 at 562.693 kb on + strand, within EX31_RS23970 at 562.694 kb on - strand, within EX31_RS23970 at 562.694 kb on - strand, within EX31_RS23970 at 562.750 kb on - strand, within EX31_RS23970 at 562.750 kb on - strand, within EX31_RS23970 at 562.753 kb on + strand, within EX31_RS23970 at 562.795 kb on - strand, within EX31_RS23970 at 562.925 kb on + strand, within EX31_RS23970
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 560,481 + -0.2 560,492 + +0.1 560,492 + +0.8 560,493 - +0.0 560,493 - -0.3 560,497 + -1.3 560,497 + -0.8 560,498 - +1.6 560,498 - +0.3 560,503 + -2.9 560,503 + -2.0 560,504 - -0.6 560,538 + +0.2 560,538 + +0.8 560,539 - +0.4 560,561 + -0.4 560,561 + -0.2 560,561 + +0.6 560,561 + +0.2 560,562 - -0.7 560,562 - -1.2 560,659 + EX31_RS23955 0.17 -0.4 560,733 + EX31_RS23955 0.25 -0.5 560,737 + EX31_RS23955 0.25 -2.9 560,737 + EX31_RS23955 0.25 -0.6 560,737 + EX31_RS23955 0.25 -0.5 560,737 + EX31_RS23955 0.25 +0.8 560,785 + EX31_RS23955 0.31 -1.8 560,785 + EX31_RS23955 0.31 -0.0 560,785 + EX31_RS23955 0.31 -0.1 560,785 + EX31_RS23955 0.31 +1.0 560,785 + EX31_RS23955 0.31 +0.0 560,785 + EX31_RS23955 0.31 -0.5 560,785 + EX31_RS23955 0.31 +0.6 560,785 + EX31_RS23955 0.31 +0.1 560,785 + EX31_RS23955 0.31 -0.6 560,785 + EX31_RS23955 0.31 +0.5 560,786 - EX31_RS23955 0.31 +0.5 560,786 - EX31_RS23955 0.31 -0.7 560,786 - EX31_RS23955 0.31 -0.2 560,929 + EX31_RS23955 0.46 -0.3 560,929 + EX31_RS23955 0.46 +0.4 560,930 - EX31_RS23955 0.46 -0.2 560,933 - EX31_RS23955 0.47 -0.5 560,933 - EX31_RS23955 0.47 +0.2 561,171 + EX31_RS23955 0.73 +0.7 561,171 + EX31_RS23955 0.73 +0.6 561,172 - EX31_RS23955 0.73 -2.1 561,200 + EX31_RS23955 0.76 +0.8 561,200 + EX31_RS23955 0.76 -1.4 561,200 + EX31_RS23955 0.76 +0.3 561,201 - EX31_RS23955 0.76 -0.4 561,201 - EX31_RS23955 0.76 +0.7 561,201 - EX31_RS23955 0.76 -1.4 561,202 + EX31_RS23955 0.76 +0.5 561,202 + EX31_RS23955 0.76 -0.2 561,202 + EX31_RS23955 0.76 -0.8 561,202 + EX31_RS23955 0.76 -0.5 561,202 + EX31_RS23955 0.76 +0.0 561,202 + EX31_RS23955 0.76 +0.5 561,202 + EX31_RS23955 0.76 +0.1 561,202 + EX31_RS23955 0.76 -0.5 561,202 + EX31_RS23955 0.76 -1.2 561,245 + EX31_RS23955 0.81 +0.0 561,245 + EX31_RS23955 0.81 +0.1 561,245 + EX31_RS23955 0.81 +0.4 561,245 + EX31_RS23955 0.81 +0.7 561,245 + EX31_RS23955 0.81 -0.1 561,245 + EX31_RS23955 0.81 -1.9 561,245 + EX31_RS23955 0.81 +0.1 561,246 - EX31_RS23955 0.81 +1.8 561,251 + EX31_RS23955 0.81 +0.5 561,251 + EX31_RS23955 0.81 +0.3 561,251 + EX31_RS23955 0.81 -0.6 561,251 + EX31_RS23955 0.81 -0.7 561,251 + EX31_RS23955 0.81 +0.3 561,251 + EX31_RS23955 0.81 -0.1 561,252 - EX31_RS23955 0.81 -0.0 561,252 - EX31_RS23955 0.81 -1.7 561,388 + +0.1 561,388 + -2.2 561,389 - +1.4 561,605 + EX31_RS23960 0.26 -0.7 561,619 - EX31_RS23960 0.29 -1.3 561,619 - EX31_RS23960 0.29 +0.1 561,690 + EX31_RS23960 0.42 +0.5 561,690 + EX31_RS23960 0.42 +0.4 561,690 + EX31_RS23960 0.42 -2.0 561,690 + EX31_RS23960 0.42 -0.6 561,691 - EX31_RS23960 0.42 -0.1 561,691 - EX31_RS23960 0.42 +0.7 561,691 - EX31_RS23960 0.42 -1.2 561,691 - EX31_RS23960 0.42 -0.2 561,838 - EX31_RS23960 0.70 -0.7 561,838 - EX31_RS23960 0.70 -0.2 561,926 - EX31_RS23960 0.86 -1.2 561,935 - EX31_RS23960 0.88 -1.5 561,947 + -1.0 561,948 - +0.4 562,000 + +0.2 562,001 - +0.1 562,001 - +0.5 562,001 - +0.9 562,011 + +0.3 562,011 + -2.6 562,011 + +0.9 562,011 + -1.4 562,011 + +0.2 562,011 + -0.3 562,023 - -0.0 562,057 + -0.2 562,058 - -0.1 562,067 + +1.2 562,286 - EX31_RS23965 0.50 +0.1 562,352 + EX31_RS23965 0.63 +1.0 562,391 + EX31_RS23965 0.70 -0.0 562,391 + EX31_RS23965 0.70 -1.1 562,391 + EX31_RS23965 0.70 +1.2 562,391 + EX31_RS23965 0.70 -0.9 562,395 + EX31_RS23965 0.71 +0.8 562,395 + EX31_RS23965 0.71 -0.2 562,424 + EX31_RS23965 0.76 +0.4 562,642 + EX31_RS23970 0.19 -0.2 562,643 - EX31_RS23970 0.19 -0.3 562,690 + EX31_RS23970 0.28 -0.0 562,693 + EX31_RS23970 0.29 +0.7 562,694 - EX31_RS23970 0.29 +0.7 562,694 - EX31_RS23970 0.29 -0.5 562,750 - EX31_RS23970 0.40 +0.1 562,750 - EX31_RS23970 0.40 +0.3 562,753 + EX31_RS23970 0.41 +0.6 562,795 - EX31_RS23970 0.49 -0.6 562,925 + EX31_RS23970 0.75 -0.2
Or see this region's nucleotide sequence