Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23875 and EX31_RS23880 are separated by 152 nucleotides EX31_RS23880 and EX31_RS23885 are separated by 169 nucleotides EX31_RS23885 and EX31_RS23890 are separated by 416 nucleotides EX31_RS23890 and EX31_RS23895 are separated by 210 nucleotides
EX31_RS23875: EX31_RS23875 - DUF1471 domain-containing protein, at 543,919 to 544,176
_RS23875
EX31_RS23880: EX31_RS23880 - DUF1471 domain-containing protein, at 544,329 to 544,586
_RS23880
EX31_RS23885: EX31_RS23885 - DUF1471 domain-containing protein, at 544,756 to 545,013
_RS23885
EX31_RS23890: EX31_RS23890 - hypothetical protein, at 545,430 to 545,687
_RS23890
EX31_RS23895: EX31_RS23895 - TetR/AcrR family transcriptional regulator, at 545,898 to 546,557
_RS23895
Position (kb) 544
545
546 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 543.760 kb on + strand at 543.760 kb on + strand at 543.761 kb on - strand at 543.761 kb on - strand at 543.788 kb on + strand at 543.788 kb on + strand at 543.788 kb on + strand at 543.788 kb on + strand at 543.789 kb on - strand at 543.803 kb on + strand at 543.849 kb on - strand at 543.849 kb on - strand at 543.910 kb on + strand at 543.910 kb on + strand at 543.910 kb on + strand at 543.910 kb on + strand at 543.911 kb on - strand at 543.911 kb on - strand at 543.911 kb on - strand at 543.911 kb on - strand at 543.921 kb on - strand at 543.921 kb on - strand at 543.921 kb on - strand at 543.921 kb on - strand at 543.921 kb on - strand at 543.921 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.925 kb on - strand at 543.927 kb on - strand at 543.975 kb on + strand, within EX31_RS23875 at 543.976 kb on - strand, within EX31_RS23875 at 543.980 kb on + strand, within EX31_RS23875 at 544.008 kb on + strand, within EX31_RS23875 at 544.045 kb on - strand, within EX31_RS23875 at 544.045 kb on - strand, within EX31_RS23875 at 544.045 kb on - strand, within EX31_RS23875 at 544.165 kb on + strand at 544.166 kb on - strand at 544.180 kb on - strand at 544.236 kb on + strand at 544.237 kb on - strand at 544.237 kb on - strand at 544.272 kb on + strand at 544.272 kb on + strand at 544.273 kb on - strand at 544.273 kb on - strand at 544.277 kb on + strand at 544.278 kb on - strand at 544.291 kb on + strand at 544.292 kb on - strand at 544.304 kb on - strand at 544.331 kb on - strand at 544.331 kb on - strand at 544.335 kb on - strand at 544.337 kb on - strand at 544.355 kb on - strand, within EX31_RS23880 at 544.355 kb on - strand, within EX31_RS23880 at 544.385 kb on + strand, within EX31_RS23880 at 544.390 kb on + strand, within EX31_RS23880 at 544.470 kb on + strand, within EX31_RS23880 at 544.471 kb on - strand, within EX31_RS23880 at 544.471 kb on - strand, within EX31_RS23880 at 544.572 kb on - strand at 544.578 kb on - strand at 544.578 kb on - strand at 544.578 kb on - strand at 544.578 kb on - strand at 544.602 kb on + strand at 544.611 kb on - strand at 544.624 kb on + strand at 544.625 kb on - strand at 544.628 kb on - strand at 544.628 kb on - strand at 544.648 kb on - strand at 544.758 kb on - strand at 544.762 kb on - strand at 544.762 kb on - strand at 544.764 kb on - strand at 544.764 kb on - strand at 544.781 kb on + strand at 544.782 kb on - strand, within EX31_RS23885 at 544.817 kb on + strand, within EX31_RS23885 at 544.908 kb on + strand, within EX31_RS23885 at 544.909 kb on - strand, within EX31_RS23885 at 544.909 kb on - strand, within EX31_RS23885 at 545.019 kb on + strand at 545.019 kb on + strand at 545.020 kb on - strand at 545.020 kb on - strand at 545.056 kb on - strand at 545.093 kb on - strand at 545.219 kb on + strand at 545.266 kb on + strand at 545.267 kb on - strand at 545.272 kb on + strand at 545.272 kb on + strand at 545.272 kb on + strand at 545.272 kb on + strand at 545.272 kb on + strand at 545.293 kb on + strand at 545.337 kb on + strand at 545.337 kb on + strand at 545.338 kb on - strand at 545.364 kb on + strand at 545.374 kb on + strand at 545.374 kb on + strand at 545.374 kb on + strand at 545.374 kb on + strand at 545.374 kb on + strand at 545.374 kb on + strand at 545.375 kb on - strand at 545.431 kb on + strand at 545.431 kb on + strand at 545.431 kb on + strand at 545.432 kb on - strand at 545.432 kb on - strand at 545.432 kb on - strand at 545.434 kb on + strand at 545.434 kb on + strand at 545.435 kb on - strand at 545.437 kb on + strand at 545.438 kb on - strand at 545.438 kb on - strand at 545.438 kb on - strand at 545.495 kb on + strand, within EX31_RS23890 at 545.495 kb on + strand, within EX31_RS23890 at 545.495 kb on + strand, within EX31_RS23890 at 545.496 kb on - strand, within EX31_RS23890 at 545.496 kb on - strand, within EX31_RS23890 at 545.496 kb on - strand, within EX31_RS23890 at 545.496 kb on - strand, within EX31_RS23890 at 545.501 kb on + strand, within EX31_RS23890 at 545.528 kb on + strand, within EX31_RS23890 at 545.528 kb on + strand, within EX31_RS23890 at 545.529 kb on - strand, within EX31_RS23890 at 545.552 kb on + strand, within EX31_RS23890 at 545.552 kb on + strand, within EX31_RS23890 at 545.681 kb on + strand at 545.682 kb on - strand at 545.693 kb on + strand at 545.693 kb on + strand at 545.693 kb on + strand at 545.693 kb on + strand at 545.693 kb on + strand at 545.693 kb on + strand at 545.693 kb on + strand at 545.694 kb on - strand at 545.694 kb on - strand at 545.694 kb on - strand at 545.694 kb on - strand at 545.724 kb on + strand at 545.726 kb on + strand at 545.727 kb on - strand at 545.727 kb on - strand at 545.727 kb on - strand at 545.727 kb on - strand at 545.727 kb on - strand at 545.737 kb on + strand at 545.737 kb on + strand at 545.737 kb on + strand at 545.737 kb on + strand at 545.737 kb on + strand at 545.737 kb on + strand at 545.737 kb on + strand at 545.737 kb on + strand at 545.738 kb on - strand at 545.738 kb on - strand at 545.772 kb on + strand at 545.787 kb on - strand at 545.849 kb on + strand at 545.851 kb on + strand at 545.855 kb on + strand at 545.855 kb on + strand at 545.863 kb on + strand at 545.869 kb on + strand at 545.869 kb on + strand at 545.869 kb on + strand at 545.869 kb on + strand at 545.869 kb on + strand at 545.869 kb on + strand at 545.897 kb on + strand at 545.897 kb on + strand at 545.897 kb on + strand at 545.897 kb on + strand at 545.897 kb on + strand at 545.897 kb on + strand at 546.006 kb on + strand, within EX31_RS23895
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 543,760 + +0.0 543,760 + -0.0 543,761 - -0.4 543,761 - +0.5 543,788 + +0.9 543,788 + -0.6 543,788 + +0.7 543,788 + -0.5 543,789 - +0.5 543,803 + -1.8 543,849 - +0.6 543,849 - +0.3 543,910 + -0.7 543,910 + +0.2 543,910 + +1.0 543,910 + -0.6 543,911 - -0.4 543,911 - +0.5 543,911 - -1.9 543,911 - -1.2 543,921 - +0.7 543,921 - +1.4 543,921 - +1.5 543,921 - +0.3 543,921 - +0.9 543,921 - +0.9 543,925 - +0.2 543,925 - +0.9 543,925 - -0.4 543,925 - -1.4 543,927 - -1.1 543,975 + EX31_RS23875 0.22 -1.4 543,976 - EX31_RS23875 0.22 +0.1 543,980 + EX31_RS23875 0.24 +0.1 544,008 + EX31_RS23875 0.34 +0.2 544,045 - EX31_RS23875 0.49 +1.3 544,045 - EX31_RS23875 0.49 -0.9 544,045 - EX31_RS23875 0.49 +0.5 544,165 + +1.6 544,166 - +0.3 544,180 - -0.0 544,236 + +0.3 544,237 - +0.2 544,237 - +0.6 544,272 + -0.3 544,272 + +0.4 544,273 - -0.5 544,273 - -0.3 544,277 + +0.7 544,278 - -0.2 544,291 + +0.2 544,292 - -0.3 544,304 - +0.4 544,331 - +0.0 544,331 - +0.4 544,335 - -0.2 544,337 - +0.3 544,355 - EX31_RS23880 0.10 +0.0 544,355 - EX31_RS23880 0.10 -0.9 544,385 + EX31_RS23880 0.22 +0.0 544,390 + EX31_RS23880 0.24 +0.7 544,470 + EX31_RS23880 0.55 -2.5 544,471 - EX31_RS23880 0.55 -1.0 544,471 - EX31_RS23880 0.55 -0.0 544,572 - +0.3 544,578 - -1.2 544,578 - -0.2 544,578 - +0.9 544,578 - +0.1 544,602 + -0.0 544,611 - -0.4 544,624 + -0.3 544,625 - +0.3 544,628 - +0.1 544,628 - +0.5 544,648 - -0.2 544,758 - +0.1 544,762 - +1.1 544,762 - -2.1 544,764 - +0.1 544,764 - -0.3 544,781 + +0.0 544,782 - EX31_RS23885 0.10 -0.6 544,817 + EX31_RS23885 0.24 +1.5 544,908 + EX31_RS23885 0.59 +0.3 544,909 - EX31_RS23885 0.59 -1.1 544,909 - EX31_RS23885 0.59 -1.2 545,019 + -1.7 545,019 + +0.1 545,020 - +0.4 545,020 - -2.8 545,056 - -0.5 545,093 - +0.7 545,219 + -1.0 545,266 + +0.2 545,267 - -0.7 545,272 + -1.8 545,272 + -0.6 545,272 + -1.5 545,272 + -0.9 545,272 + -1.0 545,293 + +0.7 545,337 + -0.7 545,337 + -1.3 545,338 - -0.5 545,364 + +0.8 545,374 + -0.6 545,374 + +1.2 545,374 + -1.0 545,374 + +0.6 545,374 + +0.4 545,374 + -1.3 545,375 - -0.4 545,431 + -1.2 545,431 + -0.5 545,431 + -0.5 545,432 - -0.4 545,432 - +0.2 545,432 - -0.1 545,434 + +0.0 545,434 + -0.4 545,435 - +0.4 545,437 + -0.2 545,438 - -0.1 545,438 - +0.5 545,438 - +0.0 545,495 + EX31_RS23890 0.25 -0.8 545,495 + EX31_RS23890 0.25 -0.6 545,495 + EX31_RS23890 0.25 -0.2 545,496 - EX31_RS23890 0.26 +1.3 545,496 - EX31_RS23890 0.26 -0.6 545,496 - EX31_RS23890 0.26 +0.3 545,496 - EX31_RS23890 0.26 -0.2 545,501 + EX31_RS23890 0.28 -0.9 545,528 + EX31_RS23890 0.38 -0.0 545,528 + EX31_RS23890 0.38 -0.6 545,529 - EX31_RS23890 0.38 +2.2 545,552 + EX31_RS23890 0.47 +0.2 545,552 + EX31_RS23890 0.47 +1.2 545,681 + -0.0 545,682 - +0.7 545,693 + -0.4 545,693 + -0.2 545,693 + -0.0 545,693 + -0.4 545,693 + -0.2 545,693 + -0.3 545,693 + +0.0 545,694 - -0.5 545,694 - -1.6 545,694 - +0.6 545,694 - -0.0 545,724 + -0.7 545,726 + -0.7 545,727 - -0.8 545,727 - +0.2 545,727 - -0.2 545,727 - -0.6 545,727 - +0.5 545,737 + -0.6 545,737 + +0.4 545,737 + +0.0 545,737 + +0.6 545,737 + -0.6 545,737 + +0.3 545,737 + -0.6 545,737 + -0.7 545,738 - -0.9 545,738 - +1.1 545,772 + -1.7 545,787 - +0.8 545,849 + +0.4 545,851 + +0.5 545,855 + -0.0 545,855 + +0.7 545,863 + +0.2 545,869 + +0.1 545,869 + -2.1 545,869 + +0.0 545,869 + +0.3 545,869 + +0.7 545,869 + -0.3 545,897 + -0.4 545,897 + -1.4 545,897 + -0.8 545,897 + +0.0 545,897 + +0.3 545,897 + -0.3 546,006 + EX31_RS23895 0.16 +0.5
Or see this region's nucleotide sequence