Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19435 and EX31_RS19440 are separated by 704 nucleotides EX31_RS19440 and EX31_RS19445 are separated by 987 nucleotides
EX31_RS19435: EX31_RS19435 - NADH-quinone oxidoreductase subunit A, at 515,851 to 516,294
_RS19435
EX31_RS19440: EX31_RS19440 - transcriptional regulator LrhA, at 516,999 to 517,943
_RS19440
EX31_RS19445: EX31_RS19445 - pyridoxal phosphate-dependent aminotransferase, at 518,931 to 520,145
_RS19445
Position (kb) 516
517
518 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 516.039 kb on - strand, within EX31_RS19435 at 516.044 kb on + strand, within EX31_RS19435 at 516.045 kb on - strand, within EX31_RS19435 at 516.136 kb on - strand, within EX31_RS19435 at 516.288 kb on + strand at 516.289 kb on - strand at 516.289 kb on - strand at 516.289 kb on - strand at 516.299 kb on + strand at 516.335 kb on - strand at 516.412 kb on - strand at 516.412 kb on - strand at 516.487 kb on + strand at 516.493 kb on - strand at 516.507 kb on + strand at 516.507 kb on + strand at 516.508 kb on - strand at 516.512 kb on - strand at 516.516 kb on + strand at 516.516 kb on + strand at 516.516 kb on + strand at 516.517 kb on - strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.533 kb on + strand at 516.534 kb on - strand at 516.534 kb on - strand at 516.534 kb on - strand at 516.539 kb on - strand at 516.539 kb on - strand at 516.590 kb on - strand at 516.590 kb on - strand at 516.590 kb on - strand at 516.590 kb on - strand at 516.608 kb on + strand at 516.611 kb on + strand at 516.611 kb on + strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.612 kb on - strand at 516.625 kb on + strand at 516.625 kb on + strand at 516.626 kb on - strand at 516.626 kb on - strand at 516.626 kb on - strand at 516.626 kb on - strand at 516.694 kb on - strand at 516.810 kb on - strand at 516.814 kb on + strand at 516.893 kb on + strand at 516.936 kb on + strand at 516.941 kb on - strand at 516.941 kb on - strand at 516.981 kb on + strand at 516.982 kb on - strand at 516.982 kb on - strand at 516.982 kb on - strand at 516.995 kb on + strand at 517.000 kb on + strand at 517.001 kb on - strand at 517.057 kb on + strand at 517.058 kb on - strand at 517.058 kb on - strand at 517.058 kb on - strand at 517.058 kb on - strand at 517.058 kb on - strand at 517.072 kb on + strand at 517.073 kb on - strand at 517.144 kb on + strand, within EX31_RS19440 at 517.153 kb on + strand, within EX31_RS19440 at 517.153 kb on + strand, within EX31_RS19440 at 517.154 kb on - strand, within EX31_RS19440 at 517.154 kb on - strand, within EX31_RS19440 at 517.154 kb on - strand, within EX31_RS19440 at 517.176 kb on + strand, within EX31_RS19440 at 517.177 kb on - strand, within EX31_RS19440 at 517.294 kb on + strand, within EX31_RS19440 at 517.294 kb on + strand, within EX31_RS19440 at 517.294 kb on + strand, within EX31_RS19440 at 517.294 kb on + strand, within EX31_RS19440 at 517.295 kb on - strand, within EX31_RS19440 at 517.295 kb on - strand, within EX31_RS19440 at 517.295 kb on - strand, within EX31_RS19440 at 517.295 kb on - strand, within EX31_RS19440 at 517.295 kb on - strand, within EX31_RS19440 at 517.301 kb on + strand, within EX31_RS19440 at 517.302 kb on - strand, within EX31_RS19440 at 517.313 kb on + strand, within EX31_RS19440 at 517.314 kb on - strand, within EX31_RS19440 at 517.375 kb on - strand, within EX31_RS19440 at 517.423 kb on + strand, within EX31_RS19440 at 517.424 kb on - strand, within EX31_RS19440 at 517.449 kb on + strand, within EX31_RS19440 at 517.449 kb on + strand, within EX31_RS19440 at 517.450 kb on - strand, within EX31_RS19440 at 517.450 kb on - strand, within EX31_RS19440 at 517.556 kb on + strand, within EX31_RS19440 at 517.556 kb on + strand, within EX31_RS19440 at 517.556 kb on + strand, within EX31_RS19440 at 517.556 kb on + strand, within EX31_RS19440 at 517.572 kb on + strand, within EX31_RS19440 at 517.572 kb on + strand, within EX31_RS19440 at 517.572 kb on + strand, within EX31_RS19440 at 517.572 kb on + strand, within EX31_RS19440 at 517.572 kb on + strand, within EX31_RS19440 at 517.572 kb on + strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.573 kb on - strand, within EX31_RS19440 at 517.602 kb on + strand, within EX31_RS19440 at 517.603 kb on - strand, within EX31_RS19440 at 517.603 kb on - strand, within EX31_RS19440 at 517.619 kb on + strand, within EX31_RS19440 at 517.620 kb on - strand, within EX31_RS19440 at 517.663 kb on + strand, within EX31_RS19440 at 517.664 kb on - strand, within EX31_RS19440 at 517.664 kb on - strand, within EX31_RS19440 at 517.664 kb on - strand, within EX31_RS19440 at 517.664 kb on - strand, within EX31_RS19440 at 517.691 kb on + strand, within EX31_RS19440 at 517.691 kb on + strand, within EX31_RS19440 at 517.692 kb on - strand, within EX31_RS19440 at 517.692 kb on - strand, within EX31_RS19440 at 517.715 kb on - strand, within EX31_RS19440 at 517.819 kb on - strand, within EX31_RS19440 at 517.866 kb on - strand at 517.866 kb on - strand at 517.866 kb on - strand at 517.866 kb on - strand at 517.868 kb on + strand at 517.868 kb on + strand at 517.868 kb on + strand at 517.884 kb on + strand at 517.884 kb on + strand at 517.884 kb on + strand at 517.885 kb on - strand at 517.885 kb on - strand at 517.943 kb on + strand at 517.944 kb on - strand at 517.944 kb on - strand at 517.944 kb on - strand at 517.944 kb on - strand at 517.959 kb on + strand at 517.961 kb on + strand at 517.962 kb on - strand at 517.962 kb on - strand at 517.968 kb on + strand at 517.968 kb on + strand at 517.969 kb on - strand at 517.969 kb on - strand at 517.969 kb on - strand at 517.969 kb on - strand at 517.969 kb on - strand at 517.971 kb on + strand at 517.972 kb on - strand at 518.001 kb on - strand at 518.018 kb on + strand at 518.019 kb on - strand at 518.025 kb on + strand at 518.025 kb on + strand at 518.025 kb on + strand at 518.025 kb on + strand at 518.026 kb on - strand at 518.026 kb on - strand at 518.026 kb on - strand at 518.054 kb on + strand at 518.054 kb on + strand at 518.055 kb on - strand at 518.055 kb on - strand at 518.055 kb on - strand at 518.055 kb on - strand at 518.109 kb on + strand at 518.124 kb on + strand at 518.149 kb on + strand at 518.149 kb on + strand at 518.163 kb on + strand at 518.164 kb on - strand at 518.167 kb on - strand at 518.194 kb on - strand at 518.200 kb on + strand at 518.201 kb on - strand at 518.206 kb on - strand at 518.229 kb on + strand at 518.230 kb on - strand at 518.275 kb on + strand at 518.278 kb on + strand at 518.299 kb on + strand at 518.326 kb on + strand at 518.329 kb on + strand at 518.329 kb on + strand at 518.329 kb on + strand at 518.330 kb on - strand at 518.339 kb on - strand at 518.363 kb on - strand at 518.417 kb on + strand at 518.417 kb on + strand at 518.417 kb on + strand at 518.417 kb on + strand at 518.417 kb on + strand at 518.417 kb on + strand at 518.417 kb on + strand at 518.418 kb on - strand at 518.418 kb on - strand at 518.419 kb on + strand at 518.419 kb on + strand at 518.436 kb on + strand at 518.441 kb on - strand at 518.441 kb on - strand at 518.441 kb on - strand at 518.441 kb on - strand at 518.459 kb on + strand at 518.468 kb on - strand at 518.471 kb on + strand at 518.501 kb on - strand at 518.510 kb on + strand at 518.518 kb on + strand at 518.518 kb on + strand at 518.519 kb on - strand at 518.519 kb on - strand at 518.519 kb on - strand at 518.519 kb on - strand at 518.525 kb on - strand at 518.711 kb on - strand at 518.729 kb on + strand at 518.740 kb on - strand at 518.740 kb on - strand at 518.771 kb on + strand at 518.771 kb on + strand at 518.771 kb on + strand at 518.771 kb on + strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.772 kb on - strand at 518.775 kb on - strand at 518.784 kb on + strand at 518.794 kb on + strand at 518.851 kb on + strand at 518.851 kb on + strand at 518.852 kb on - strand at 518.875 kb on + strand at 518.875 kb on + strand at 518.876 kb on - strand at 518.876 kb on - strand at 518.876 kb on - strand at 518.876 kb on - strand at 518.908 kb on + strand at 518.909 kb on - strand at 518.909 kb on - strand at 518.928 kb on + strand at 518.928 kb on + strand at 518.928 kb on + strand at 518.929 kb on - strand at 518.929 kb on - strand at 518.929 kb on - strand at 518.929 kb on - strand at 518.929 kb on - strand at 518.929 kb on - strand at 518.929 kb on - strand at 518.929 kb on - strand at 518.929 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 516,039 - EX31_RS19435 0.42 -0.4 516,044 + EX31_RS19435 0.43 +0.2 516,045 - EX31_RS19435 0.44 +0.8 516,136 - EX31_RS19435 0.64 -0.3 516,288 + +1.3 516,289 - +1.7 516,289 - +1.9 516,289 - +0.6 516,299 + +1.7 516,335 - -0.3 516,412 - +0.5 516,412 - +0.0 516,487 + +0.4 516,493 - -0.7 516,507 + -0.7 516,507 + +0.1 516,508 - -3.1 516,512 - -0.0 516,516 + -0.5 516,516 + +0.7 516,516 + -0.3 516,517 - -1.0 516,533 + +1.4 516,533 + -1.7 516,533 + +0.7 516,533 + +0.1 516,533 + -0.7 516,534 - -0.9 516,534 - -1.4 516,534 - -0.4 516,539 - -0.1 516,539 - +1.7 516,590 - -0.3 516,590 - -0.6 516,590 - +0.4 516,590 - +0.6 516,608 + +0.0 516,611 + +0.3 516,611 + -0.2 516,612 - -1.4 516,612 - +1.9 516,612 - +0.4 516,612 - -0.4 516,612 - -1.0 516,625 + -0.0 516,625 + +0.2 516,626 - -0.1 516,626 - +0.6 516,626 - -0.2 516,626 - +0.0 516,694 - -1.1 516,810 - +1.0 516,814 + +0.2 516,893 + -0.6 516,936 + +0.4 516,941 - +0.7 516,941 - -0.1 516,981 + +1.7 516,982 - -0.9 516,982 - -1.0 516,982 - -0.0 516,995 + -0.1 517,000 + -0.2 517,001 - +0.2 517,057 + +0.1 517,058 - -0.1 517,058 - -2.9 517,058 - +0.2 517,058 - +0.5 517,058 - -1.0 517,072 + -1.0 517,073 - -0.1 517,144 + EX31_RS19440 0.15 -0.5 517,153 + EX31_RS19440 0.16 +1.3 517,153 + EX31_RS19440 0.16 -0.5 517,154 - EX31_RS19440 0.16 -1.6 517,154 - EX31_RS19440 0.16 -0.3 517,154 - EX31_RS19440 0.16 -0.3 517,176 + EX31_RS19440 0.19 +0.3 517,177 - EX31_RS19440 0.19 -0.5 517,294 + EX31_RS19440 0.31 -0.1 517,294 + EX31_RS19440 0.31 +0.2 517,294 + EX31_RS19440 0.31 -2.0 517,294 + EX31_RS19440 0.31 -2.4 517,295 - EX31_RS19440 0.31 -1.3 517,295 - EX31_RS19440 0.31 -2.0 517,295 - EX31_RS19440 0.31 -3.1 517,295 - EX31_RS19440 0.31 -0.5 517,295 - EX31_RS19440 0.31 -0.5 517,301 + EX31_RS19440 0.32 -0.9 517,302 - EX31_RS19440 0.32 +0.2 517,313 + EX31_RS19440 0.33 -0.1 517,314 - EX31_RS19440 0.33 -1.1 517,375 - EX31_RS19440 0.40 -1.3 517,423 + EX31_RS19440 0.45 -0.7 517,424 - EX31_RS19440 0.45 -0.5 517,449 + EX31_RS19440 0.48 -1.5 517,449 + EX31_RS19440 0.48 -0.6 517,450 - EX31_RS19440 0.48 -0.3 517,450 - EX31_RS19440 0.48 +0.3 517,556 + EX31_RS19440 0.59 -0.9 517,556 + EX31_RS19440 0.59 +0.2 517,556 + EX31_RS19440 0.59 -0.0 517,556 + EX31_RS19440 0.59 -1.3 517,572 + EX31_RS19440 0.61 -0.5 517,572 + EX31_RS19440 0.61 +0.8 517,572 + EX31_RS19440 0.61 -0.8 517,572 + EX31_RS19440 0.61 +0.9 517,572 + EX31_RS19440 0.61 +0.3 517,572 + EX31_RS19440 0.61 -0.5 517,573 - EX31_RS19440 0.61 +0.8 517,573 - EX31_RS19440 0.61 -0.8 517,573 - EX31_RS19440 0.61 -0.1 517,573 - EX31_RS19440 0.61 -1.3 517,573 - EX31_RS19440 0.61 -0.3 517,573 - EX31_RS19440 0.61 -1.3 517,573 - EX31_RS19440 0.61 -2.3 517,573 - EX31_RS19440 0.61 +0.6 517,573 - EX31_RS19440 0.61 -0.9 517,573 - EX31_RS19440 0.61 -1.0 517,573 - EX31_RS19440 0.61 -1.6 517,573 - EX31_RS19440 0.61 -1.1 517,573 - EX31_RS19440 0.61 -0.6 517,573 - EX31_RS19440 0.61 -0.7 517,573 - EX31_RS19440 0.61 -0.1 517,573 - EX31_RS19440 0.61 +0.0 517,602 + EX31_RS19440 0.64 -0.5 517,603 - EX31_RS19440 0.64 -0.2 517,603 - EX31_RS19440 0.64 -0.8 517,619 + EX31_RS19440 0.66 +0.4 517,620 - EX31_RS19440 0.66 +0.5 517,663 + EX31_RS19440 0.70 -1.1 517,664 - EX31_RS19440 0.70 -1.1 517,664 - EX31_RS19440 0.70 -1.8 517,664 - EX31_RS19440 0.70 -0.3 517,664 - EX31_RS19440 0.70 -1.5 517,691 + EX31_RS19440 0.73 -1.1 517,691 + EX31_RS19440 0.73 +0.4 517,692 - EX31_RS19440 0.73 +0.3 517,692 - EX31_RS19440 0.73 -1.9 517,715 - EX31_RS19440 0.76 -1.3 517,819 - EX31_RS19440 0.87 +0.8 517,866 - +0.7 517,866 - -0.5 517,866 - -1.0 517,866 - -0.9 517,868 + -1.0 517,868 + -1.0 517,868 + -0.4 517,884 + +0.7 517,884 + +0.1 517,884 + -1.0 517,885 - -0.1 517,885 - -0.7 517,943 + -0.2 517,944 - -1.2 517,944 - +0.1 517,944 - -0.1 517,944 - -0.2 517,959 + -0.9 517,961 + -0.2 517,962 - +0.7 517,962 - +0.8 517,968 + +0.6 517,968 + -0.6 517,969 - -0.0 517,969 - +0.6 517,969 - +0.7 517,969 - +0.7 517,969 - +0.8 517,971 + -1.8 517,972 - +0.1 518,001 - +0.5 518,018 + -0.9 518,019 - +0.8 518,025 + +0.2 518,025 + +1.1 518,025 + +0.3 518,025 + -0.4 518,026 - +0.3 518,026 - -0.3 518,026 - +0.6 518,054 + -0.6 518,054 + -0.6 518,055 - -0.4 518,055 - +0.6 518,055 - -0.1 518,055 - +0.8 518,109 + -0.5 518,124 + +0.7 518,149 + -0.5 518,149 + -0.8 518,163 + -2.2 518,164 - +0.9 518,167 - +0.8 518,194 - +0.7 518,200 + +1.2 518,201 - +0.6 518,206 - +0.3 518,229 + +0.5 518,230 - +1.3 518,275 + -0.1 518,278 + -1.3 518,299 + -1.7 518,326 + +0.4 518,329 + +0.5 518,329 + +0.5 518,329 + +0.1 518,330 - +0.7 518,339 - +0.9 518,363 - +0.7 518,417 + +0.1 518,417 + +0.2 518,417 + -0.9 518,417 + +0.2 518,417 + -0.2 518,417 + -0.4 518,417 + +0.3 518,418 - +0.7 518,418 - +0.3 518,419 + +0.5 518,419 + -0.6 518,436 + +0.5 518,441 - +0.7 518,441 - +0.3 518,441 - +0.4 518,441 - +0.7 518,459 + -0.0 518,468 - +0.5 518,471 + +0.1 518,501 - +0.4 518,510 + +0.9 518,518 + -0.0 518,518 + +0.9 518,519 - +1.6 518,519 - +0.9 518,519 - +0.6 518,519 - -0.4 518,525 - +0.2 518,711 - +1.1 518,729 + +0.4 518,740 - +0.8 518,740 - -0.0 518,771 + +0.1 518,771 + +0.3 518,771 + +0.1 518,771 + -0.7 518,772 - -1.0 518,772 - +0.1 518,772 - +0.4 518,772 - +0.7 518,772 - +1.0 518,772 - +0.2 518,772 - +0.4 518,772 - +0.1 518,772 - +1.0 518,772 - +1.0 518,775 - -0.1 518,784 + +0.8 518,794 + +0.6 518,851 + -0.2 518,851 + +0.5 518,852 - +0.3 518,875 + +0.1 518,875 + +0.2 518,876 - -0.0 518,876 - -0.3 518,876 - +0.6 518,876 - -0.3 518,908 + -1.0 518,909 - +0.7 518,909 - +0.2 518,928 + +0.7 518,928 + -0.1 518,928 + +0.3 518,929 - -0.1 518,929 - +0.5 518,929 - +0.2 518,929 - +0.7 518,929 - -0.8 518,929 - +0.4 518,929 - -0.2 518,929 - +0.6 518,929 - +0.6
Or see this region's nucleotide sequence