Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18000 and EX31_RS18005 are separated by 188 nucleotides EX31_RS18005 and EX31_RS18010 are separated by 119 nucleotides EX31_RS18010 and EX31_RS18015 are separated by 66 nucleotides
EX31_RS18000: EX31_RS18000 - CoA-binding protein, at 157,719 to 158,132
_RS18000
EX31_RS18005: EX31_RS18005 - DUF2057 family protein, at 158,321 to 158,980
_RS18005
EX31_RS18010: EX31_RS18010 - methylglyoxal synthase, at 159,100 to 159,561
_RS18010
EX31_RS18015: EX31_RS18015 - DNA helicase IV, at 159,628 to 161,682
_RS18015
Position (kb) 159
160 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 158.118 kb on - strand at 158.119 kb on + strand at 158.154 kb on + strand at 158.154 kb on + strand at 158.161 kb on + strand at 158.161 kb on + strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.196 kb on + strand at 158.197 kb on - strand at 158.197 kb on - strand at 158.239 kb on - strand at 158.283 kb on - strand at 158.285 kb on + strand at 158.304 kb on + strand at 158.304 kb on + strand at 158.304 kb on + strand at 158.305 kb on - strand at 158.392 kb on + strand, within EX31_RS18005 at 158.392 kb on + strand, within EX31_RS18005 at 158.393 kb on - strand, within EX31_RS18005 at 158.555 kb on + strand, within EX31_RS18005 at 158.555 kb on + strand, within EX31_RS18005 at 158.556 kb on - strand, within EX31_RS18005 at 158.556 kb on - strand, within EX31_RS18005 at 158.597 kb on - strand, within EX31_RS18005 at 158.657 kb on - strand, within EX31_RS18005 at 158.703 kb on + strand, within EX31_RS18005 at 158.728 kb on + strand, within EX31_RS18005 at 158.728 kb on + strand, within EX31_RS18005 at 158.746 kb on + strand, within EX31_RS18005 at 158.746 kb on + strand, within EX31_RS18005 at 158.746 kb on + strand, within EX31_RS18005 at 158.777 kb on + strand, within EX31_RS18005 at 158.777 kb on + strand, within EX31_RS18005 at 158.882 kb on + strand, within EX31_RS18005 at 158.882 kb on + strand, within EX31_RS18005 at 158.882 kb on + strand, within EX31_RS18005 at 158.883 kb on - strand, within EX31_RS18005 at 158.938 kb on - strand at 158.938 kb on - strand at 158.946 kb on + strand at 158.983 kb on + strand at 158.983 kb on + strand at 158.983 kb on + strand at 159.021 kb on + strand at 159.035 kb on + strand at 159.036 kb on - strand at 159.042 kb on + strand at 159.077 kb on - strand at 159.097 kb on + strand at 159.097 kb on + strand at 159.098 kb on - strand at 159.098 kb on - strand at 159.106 kb on + strand at 159.107 kb on - strand at 159.138 kb on + strand at 159.138 kb on + strand at 159.138 kb on + strand at 159.138 kb on + strand at 159.138 kb on + strand at 159.138 kb on + strand at 159.139 kb on - strand at 159.139 kb on - strand at 159.139 kb on - strand at 159.139 kb on - strand at 159.140 kb on + strand at 159.140 kb on + strand at 159.140 kb on + strand at 159.140 kb on + strand at 159.140 kb on + strand at 159.141 kb on - strand at 159.141 kb on - strand at 159.141 kb on - strand at 159.192 kb on + strand, within EX31_RS18010 at 159.226 kb on + strand, within EX31_RS18010 at 159.226 kb on + strand, within EX31_RS18010 at 159.227 kb on - strand, within EX31_RS18010 at 159.274 kb on - strand, within EX31_RS18010 at 159.290 kb on + strand, within EX31_RS18010 at 159.291 kb on - strand, within EX31_RS18010 at 159.432 kb on + strand, within EX31_RS18010 at 159.559 kb on + strand at 159.560 kb on - strand at 159.626 kb on - strand at 159.626 kb on - strand at 159.626 kb on - strand at 159.629 kb on + strand at 159.673 kb on + strand at 159.674 kb on - strand at 159.743 kb on + strand at 159.744 kb on - strand at 159.744 kb on - strand at 159.744 kb on - strand at 159.744 kb on - strand at 159.744 kb on - strand at 159.744 kb on - strand at 159.744 kb on - strand at 159.744 kb on - strand at 159.749 kb on - strand at 159.793 kb on + strand at 159.865 kb on - strand, within EX31_RS18015 at 159.891 kb on + strand, within EX31_RS18015 at 159.921 kb on + strand, within EX31_RS18015 at 159.922 kb on - strand, within EX31_RS18015 at 159.922 kb on - strand, within EX31_RS18015 at 159.922 kb on - strand, within EX31_RS18015 at 159.996 kb on + strand, within EX31_RS18015 at 159.996 kb on + strand, within EX31_RS18015 at 159.997 kb on - strand, within EX31_RS18015 at 160.144 kb on - strand, within EX31_RS18015 at 160.144 kb on - strand, within EX31_RS18015 at 160.179 kb on - strand, within EX31_RS18015 at 160.186 kb on - strand, within EX31_RS18015 at 160.305 kb on + strand, within EX31_RS18015 at 160.306 kb on - strand, within EX31_RS18015 at 160.306 kb on - strand, within EX31_RS18015 at 160.306 kb on - strand, within EX31_RS18015 at 160.306 kb on - strand, within EX31_RS18015 at 160.383 kb on + strand, within EX31_RS18015 at 160.384 kb on - strand, within EX31_RS18015 at 160.423 kb on - strand, within EX31_RS18015 at 160.423 kb on - strand, within EX31_RS18015 at 160.440 kb on + strand, within EX31_RS18015 at 160.519 kb on - strand, within EX31_RS18015 at 160.528 kb on - strand, within EX31_RS18015 at 160.528 kb on - strand, within EX31_RS18015 at 160.528 kb on - strand, within EX31_RS18015
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 158,118 - -1.1 158,119 + +0.9 158,154 + +0.4 158,154 + +1.1 158,161 + +0.8 158,161 + +0.3 158,162 - +0.6 158,162 - +1.2 158,162 - +0.2 158,162 - -0.2 158,162 - -0.2 158,162 - -2.7 158,162 - +0.3 158,162 - -0.5 158,162 - -0.0 158,196 + +0.8 158,197 - +0.2 158,197 - -0.2 158,239 - +0.4 158,283 - -1.2 158,285 + -1.4 158,304 + +0.0 158,304 + -1.3 158,304 + -0.3 158,305 - -0.2 158,392 + EX31_RS18005 0.11 +0.1 158,392 + EX31_RS18005 0.11 +0.1 158,393 - EX31_RS18005 0.11 +0.4 158,555 + EX31_RS18005 0.35 +0.5 158,555 + EX31_RS18005 0.35 +0.3 158,556 - EX31_RS18005 0.36 +0.5 158,556 - EX31_RS18005 0.36 +0.7 158,597 - EX31_RS18005 0.42 -2.2 158,657 - EX31_RS18005 0.51 -0.4 158,703 + EX31_RS18005 0.58 +0.7 158,728 + EX31_RS18005 0.62 -1.4 158,728 + EX31_RS18005 0.62 +0.6 158,746 + EX31_RS18005 0.64 -1.8 158,746 + EX31_RS18005 0.64 +0.0 158,746 + EX31_RS18005 0.64 +1.1 158,777 + EX31_RS18005 0.69 +0.3 158,777 + EX31_RS18005 0.69 -1.3 158,882 + EX31_RS18005 0.85 -0.8 158,882 + EX31_RS18005 0.85 +0.1 158,882 + EX31_RS18005 0.85 +0.2 158,883 - EX31_RS18005 0.85 -0.7 158,938 - -0.7 158,938 - +2.9 158,946 + -0.4 158,983 + -1.2 158,983 + +0.7 158,983 + -0.3 159,021 + -0.2 159,035 + +0.4 159,036 - -0.2 159,042 + +2.4 159,077 - +0.3 159,097 + -0.1 159,097 + +0.7 159,098 - +0.6 159,098 - +0.0 159,106 + +0.7 159,107 - +0.2 159,138 + +0.1 159,138 + +1.1 159,138 + -0.2 159,138 + +0.9 159,138 + +0.2 159,138 + -0.1 159,139 - +0.5 159,139 - -0.6 159,139 - +0.1 159,139 - +0.3 159,140 + -0.4 159,140 + +0.3 159,140 + -0.9 159,140 + +0.5 159,140 + +0.4 159,141 - +1.4 159,141 - +1.3 159,141 - +1.3 159,192 + EX31_RS18010 0.20 -0.9 159,226 + EX31_RS18010 0.27 -0.8 159,226 + EX31_RS18010 0.27 +0.3 159,227 - EX31_RS18010 0.27 +0.3 159,274 - EX31_RS18010 0.38 -2.7 159,290 + EX31_RS18010 0.41 -0.4 159,291 - EX31_RS18010 0.41 -1.0 159,432 + EX31_RS18010 0.72 -0.3 159,559 + -0.3 159,560 - +0.4 159,626 - -0.1 159,626 - -0.7 159,626 - -0.5 159,629 + +0.6 159,673 + -0.0 159,674 - +0.4 159,743 + +0.4 159,744 - +0.6 159,744 - -1.0 159,744 - -0.2 159,744 - +1.1 159,744 - +0.6 159,744 - +0.9 159,744 - +0.3 159,744 - +1.4 159,749 - +0.8 159,793 + +1.3 159,865 - EX31_RS18015 0.12 +0.9 159,891 + EX31_RS18015 0.13 -0.2 159,921 + EX31_RS18015 0.14 +0.6 159,922 - EX31_RS18015 0.14 -0.1 159,922 - EX31_RS18015 0.14 +0.9 159,922 - EX31_RS18015 0.14 +0.4 159,996 + EX31_RS18015 0.18 -0.8 159,996 + EX31_RS18015 0.18 +2.7 159,997 - EX31_RS18015 0.18 -1.8 160,144 - EX31_RS18015 0.25 +0.2 160,144 - EX31_RS18015 0.25 +0.2 160,179 - EX31_RS18015 0.27 -1.9 160,186 - EX31_RS18015 0.27 +0.1 160,305 + EX31_RS18015 0.33 -0.2 160,306 - EX31_RS18015 0.33 -0.5 160,306 - EX31_RS18015 0.33 -1.3 160,306 - EX31_RS18015 0.33 +0.5 160,306 - EX31_RS18015 0.33 +0.7 160,383 + EX31_RS18015 0.37 -0.2 160,384 - EX31_RS18015 0.37 +1.2 160,423 - EX31_RS18015 0.39 +0.7 160,423 - EX31_RS18015 0.39 +0.2 160,440 + EX31_RS18015 0.40 -0.1 160,519 - EX31_RS18015 0.43 +1.5 160,528 - EX31_RS18015 0.44 +0.7 160,528 - EX31_RS18015 0.44 +0.6 160,528 - EX31_RS18015 0.44 +0.9
Or see this region's nucleotide sequence