Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17610 and EX31_RS17615 are separated by 44 nucleotides EX31_RS17615 and EX31_RS17620 are separated by 15 nucleotides EX31_RS17620 and EX31_RS17625 are separated by 140 nucleotides
EX31_RS17610: EX31_RS17610 - antibiotic biosynthesis monooxygenase, at 74,529 to 75,071
_RS17610
EX31_RS17615: EX31_RS17615 - hypothetical protein, at 75,116 to 75,394
_RS17615
EX31_RS17620: EX31_RS17620 - NAD(P)H-dependent oxidoreductase, at 75,410 to 75,985
_RS17620
EX31_RS17625: EX31_RS17625 - LysR family transcriptional regulator, at 76,126 to 77,025
_RS17625
Position (kb) 75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.459 kb on + strand at 74.460 kb on - strand at 74.542 kb on + strand at 74.598 kb on - strand, within EX31_RS17610 at 74.598 kb on - strand, within EX31_RS17610 at 74.599 kb on + strand, within EX31_RS17610 at 74.600 kb on - strand, within EX31_RS17610 at 74.600 kb on - strand, within EX31_RS17610 at 74.630 kb on - strand, within EX31_RS17610 at 74.630 kb on - strand, within EX31_RS17610 at 74.649 kb on + strand, within EX31_RS17610 at 74.651 kb on + strand, within EX31_RS17610 at 74.651 kb on + strand, within EX31_RS17610 at 74.652 kb on - strand, within EX31_RS17610 at 74.652 kb on - strand, within EX31_RS17610 at 74.652 kb on - strand, within EX31_RS17610 at 74.686 kb on - strand, within EX31_RS17610 at 74.698 kb on + strand, within EX31_RS17610 at 74.709 kb on - strand, within EX31_RS17610 at 74.735 kb on - strand, within EX31_RS17610 at 74.855 kb on + strand, within EX31_RS17610 at 74.856 kb on - strand, within EX31_RS17610 at 75.061 kb on - strand at 75.061 kb on - strand at 75.061 kb on - strand at 75.064 kb on + strand at 75.064 kb on + strand at 75.072 kb on - strand at 75.091 kb on + strand at 75.091 kb on + strand at 75.092 kb on - strand at 75.092 kb on - strand at 75.095 kb on + strand at 75.163 kb on - strand, within EX31_RS17615 at 75.184 kb on - strand, within EX31_RS17615 at 75.203 kb on - strand, within EX31_RS17615 at 75.239 kb on - strand, within EX31_RS17615 at 75.303 kb on + strand, within EX31_RS17615 at 75.304 kb on - strand, within EX31_RS17615 at 75.380 kb on - strand at 75.380 kb on - strand at 75.380 kb on - strand at 75.390 kb on + strand at 75.390 kb on + strand at 75.390 kb on + strand at 75.391 kb on - strand at 75.411 kb on + strand at 75.436 kb on + strand at 75.436 kb on + strand at 75.436 kb on + strand at 75.437 kb on - strand at 75.437 kb on - strand at 75.437 kb on - strand at 75.437 kb on - strand at 75.437 kb on - strand at 75.525 kb on + strand, within EX31_RS17620 at 75.526 kb on - strand, within EX31_RS17620 at 75.526 kb on - strand, within EX31_RS17620 at 75.526 kb on - strand, within EX31_RS17620 at 75.526 kb on - strand, within EX31_RS17620 at 75.526 kb on - strand, within EX31_RS17620 at 75.543 kb on + strand, within EX31_RS17620 at 75.603 kb on + strand, within EX31_RS17620 at 75.603 kb on + strand, within EX31_RS17620 at 75.603 kb on + strand, within EX31_RS17620 at 75.603 kb on + strand, within EX31_RS17620 at 75.604 kb on - strand, within EX31_RS17620 at 75.604 kb on - strand, within EX31_RS17620 at 75.604 kb on - strand, within EX31_RS17620 at 75.642 kb on + strand, within EX31_RS17620 at 75.643 kb on - strand, within EX31_RS17620 at 75.643 kb on - strand, within EX31_RS17620 at 75.643 kb on - strand, within EX31_RS17620 at 75.731 kb on + strand, within EX31_RS17620 at 75.731 kb on + strand, within EX31_RS17620 at 75.731 kb on + strand, within EX31_RS17620 at 75.732 kb on - strand, within EX31_RS17620 at 75.732 kb on - strand, within EX31_RS17620 at 75.732 kb on - strand, within EX31_RS17620 at 75.732 kb on - strand, within EX31_RS17620 at 75.734 kb on + strand, within EX31_RS17620 at 75.734 kb on + strand, within EX31_RS17620 at 75.735 kb on - strand, within EX31_RS17620 at 75.749 kb on + strand, within EX31_RS17620 at 75.774 kb on + strand, within EX31_RS17620 at 75.818 kb on + strand, within EX31_RS17620 at 75.862 kb on - strand, within EX31_RS17620 at 75.968 kb on - strand at 75.974 kb on + strand at 76.015 kb on - strand at 76.019 kb on + strand at 76.019 kb on + strand at 76.019 kb on + strand at 76.019 kb on + strand at 76.020 kb on - strand at 76.020 kb on - strand at 76.020 kb on - strand at 76.020 kb on - strand at 76.027 kb on + strand at 76.029 kb on + strand at 76.029 kb on + strand at 76.030 kb on - strand at 76.030 kb on - strand at 76.070 kb on + strand at 76.086 kb on - strand at 76.090 kb on - strand at 76.090 kb on - strand at 76.092 kb on + strand at 76.141 kb on + strand at 76.141 kb on + strand at 76.142 kb on - strand at 76.142 kb on - strand at 76.155 kb on + strand at 76.215 kb on - strand at 76.260 kb on + strand, within EX31_RS17625 at 76.261 kb on - strand, within EX31_RS17625 at 76.261 kb on - strand, within EX31_RS17625 at 76.261 kb on - strand, within EX31_RS17625 at 76.438 kb on + strand, within EX31_RS17625 at 76.439 kb on - strand, within EX31_RS17625 at 76.439 kb on - strand, within EX31_RS17625 at 76.462 kb on - strand, within EX31_RS17625 at 76.493 kb on + strand, within EX31_RS17625 at 76.493 kb on + strand, within EX31_RS17625 at 76.494 kb on - strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.630 kb on + strand, within EX31_RS17625 at 76.631 kb on - strand, within EX31_RS17625 at 76.663 kb on - strand, within EX31_RS17625 at 76.717 kb on - strand, within EX31_RS17625 at 76.756 kb on - strand, within EX31_RS17625 at 76.756 kb on - strand, within EX31_RS17625 at 76.829 kb on + strand, within EX31_RS17625 at 76.829 kb on + strand, within EX31_RS17625 at 76.871 kb on - strand, within EX31_RS17625 at 76.930 kb on + strand, within EX31_RS17625 at 76.931 kb on - strand, within EX31_RS17625 at 76.942 kb on + strand at 76.943 kb on - strand at 76.948 kb on + strand at 76.951 kb on + strand at 76.951 kb on + strand at 76.955 kb on + strand at 76.955 kb on + strand at 76.956 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 74,459 + +0.4 74,460 - -0.3 74,542 + +0.1 74,598 - EX31_RS17610 0.13 -1.1 74,598 - EX31_RS17610 0.13 -0.2 74,599 + EX31_RS17610 0.13 -0.5 74,600 - EX31_RS17610 0.13 -0.8 74,600 - EX31_RS17610 0.13 +0.2 74,630 - EX31_RS17610 0.19 +0.1 74,630 - EX31_RS17610 0.19 -0.5 74,649 + EX31_RS17610 0.22 +0.4 74,651 + EX31_RS17610 0.22 +0.0 74,651 + EX31_RS17610 0.22 +0.1 74,652 - EX31_RS17610 0.23 +0.2 74,652 - EX31_RS17610 0.23 -1.5 74,652 - EX31_RS17610 0.23 +1.2 74,686 - EX31_RS17610 0.29 +0.7 74,698 + EX31_RS17610 0.31 +1.3 74,709 - EX31_RS17610 0.33 +1.2 74,735 - EX31_RS17610 0.38 +1.5 74,855 + EX31_RS17610 0.60 +0.5 74,856 - EX31_RS17610 0.60 -1.2 75,061 - -1.8 75,061 - -1.9 75,061 - +0.2 75,064 + -0.8 75,064 + -0.6 75,072 - +0.1 75,091 + +0.8 75,091 + +0.5 75,092 - -0.2 75,092 - +0.4 75,095 + -0.5 75,163 - EX31_RS17615 0.17 -0.2 75,184 - EX31_RS17615 0.24 -0.8 75,203 - EX31_RS17615 0.31 +0.3 75,239 - EX31_RS17615 0.44 +1.4 75,303 + EX31_RS17615 0.67 +1.0 75,304 - EX31_RS17615 0.67 +0.3 75,380 - -1.0 75,380 - -0.0 75,380 - -0.7 75,390 + +0.2 75,390 + -0.0 75,390 + -0.6 75,391 - +0.6 75,411 + +0.2 75,436 + +0.1 75,436 + +0.3 75,436 + -0.6 75,437 - -1.0 75,437 - -0.8 75,437 - -0.2 75,437 - -0.2 75,437 - +1.6 75,525 + EX31_RS17620 0.20 -0.6 75,526 - EX31_RS17620 0.20 -1.0 75,526 - EX31_RS17620 0.20 -0.1 75,526 - EX31_RS17620 0.20 +0.5 75,526 - EX31_RS17620 0.20 +0.7 75,526 - EX31_RS17620 0.20 -0.0 75,543 + EX31_RS17620 0.23 +2.0 75,603 + EX31_RS17620 0.34 +0.3 75,603 + EX31_RS17620 0.34 +1.1 75,603 + EX31_RS17620 0.34 +0.2 75,603 + EX31_RS17620 0.34 -1.4 75,604 - EX31_RS17620 0.34 +0.3 75,604 - EX31_RS17620 0.34 +1.4 75,604 - EX31_RS17620 0.34 -0.2 75,642 + EX31_RS17620 0.40 -0.6 75,643 - EX31_RS17620 0.40 -1.1 75,643 - EX31_RS17620 0.40 +0.7 75,643 - EX31_RS17620 0.40 +0.3 75,731 + EX31_RS17620 0.56 +0.7 75,731 + EX31_RS17620 0.56 +0.6 75,731 + EX31_RS17620 0.56 +0.4 75,732 - EX31_RS17620 0.56 +0.8 75,732 - EX31_RS17620 0.56 +0.2 75,732 - EX31_RS17620 0.56 -0.0 75,732 - EX31_RS17620 0.56 +0.2 75,734 + EX31_RS17620 0.56 +0.3 75,734 + EX31_RS17620 0.56 +0.9 75,735 - EX31_RS17620 0.56 -0.4 75,749 + EX31_RS17620 0.59 -0.3 75,774 + EX31_RS17620 0.63 +0.6 75,818 + EX31_RS17620 0.71 +0.0 75,862 - EX31_RS17620 0.78 -0.7 75,968 - -1.1 75,974 + +0.1 76,015 - -0.2 76,019 + +0.2 76,019 + +0.1 76,019 + +1.3 76,019 + -0.7 76,020 - -0.5 76,020 - -0.1 76,020 - +0.5 76,020 - +0.0 76,027 + -0.5 76,029 + +0.0 76,029 + +0.4 76,030 - -1.0 76,030 - +0.8 76,070 + +0.9 76,086 - +0.1 76,090 - +0.5 76,090 - +0.3 76,092 + -0.9 76,141 + +0.4 76,141 + +0.4 76,142 - +0.7 76,142 - -1.4 76,155 + +0.6 76,215 - -0.2 76,260 + EX31_RS17625 0.15 -0.2 76,261 - EX31_RS17625 0.15 +0.8 76,261 - EX31_RS17625 0.15 -1.1 76,261 - EX31_RS17625 0.15 -0.3 76,438 + EX31_RS17625 0.35 -1.2 76,439 - EX31_RS17625 0.35 +0.0 76,439 - EX31_RS17625 0.35 +0.0 76,462 - EX31_RS17625 0.37 -0.7 76,493 + EX31_RS17625 0.41 -0.1 76,493 + EX31_RS17625 0.41 +0.2 76,494 - EX31_RS17625 0.41 +1.3 76,630 + EX31_RS17625 0.56 +1.2 76,630 + EX31_RS17625 0.56 -3.0 76,630 + EX31_RS17625 0.56 -0.1 76,630 + EX31_RS17625 0.56 -0.4 76,631 - EX31_RS17625 0.56 +1.2 76,663 - EX31_RS17625 0.60 +0.6 76,717 - EX31_RS17625 0.66 -1.2 76,756 - EX31_RS17625 0.70 -0.6 76,756 - EX31_RS17625 0.70 -0.0 76,829 + EX31_RS17625 0.78 +0.2 76,829 + EX31_RS17625 0.78 -0.8 76,871 - EX31_RS17625 0.83 -0.6 76,930 + EX31_RS17625 0.89 -0.2 76,931 - EX31_RS17625 0.89 +1.1 76,942 + -0.8 76,943 - +0.0 76,948 + -1.2 76,951 + +2.7 76,951 + -0.0 76,955 + -0.9 76,955 + +0.6 76,956 - +0.4
Or see this region's nucleotide sequence