Strain Fitness in Rahnella sp. WP5 around EX31_RS13740

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13735 and EX31_RS13740 are separated by 173 nucleotidesEX31_RS13740 and EX31_RS13745 are separated by 92 nucleotides EX31_RS13735: EX31_RS13735 - 4-hydroxy-tetrahydrodipicolinate synthase, at 7,080 to 7,946 _RS13735 EX31_RS13740: EX31_RS13740 - glutathione transferase GstA, at 8,120 to 8,725 _RS13740 EX31_RS13745: EX31_RS13745 - pyridoxal kinase PdxY, at 8,818 to 9,678 _RS13745 Position (kb) 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 7.211 kb on + strand, within EX31_RS13735at 7.322 kb on + strand, within EX31_RS13735at 7.322 kb on + strand, within EX31_RS13735at 7.323 kb on - strand, within EX31_RS13735at 7.323 kb on - strand, within EX31_RS13735at 7.323 kb on - strand, within EX31_RS13735at 7.323 kb on - strand, within EX31_RS13735at 7.357 kb on + strand, within EX31_RS13735at 7.398 kb on + strand, within EX31_RS13735at 7.398 kb on + strand, within EX31_RS13735at 7.399 kb on - strand, within EX31_RS13735at 7.399 kb on - strand, within EX31_RS13735at 7.399 kb on - strand, within EX31_RS13735at 7.476 kb on + strand, within EX31_RS13735at 7.493 kb on + strand, within EX31_RS13735at 7.493 kb on + strand, within EX31_RS13735at 7.502 kb on - strand, within EX31_RS13735at 7.646 kb on - strand, within EX31_RS13735at 7.748 kb on + strand, within EX31_RS13735at 7.764 kb on - strand, within EX31_RS13735at 7.764 kb on - strand, within EX31_RS13735at 7.880 kb on + strandat 7.881 kb on - strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.953 kb on - strandat 7.996 kb on - strandat 8.025 kb on + strandat 8.030 kb on + strandat 8.030 kb on + strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.043 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.046 kb on - strandat 8.048 kb on - strandat 8.048 kb on - strandat 8.129 kb on + strandat 8.129 kb on + strandat 8.129 kb on + strandat 8.130 kb on - strandat 8.130 kb on - strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.164 kb on + strandat 8.164 kb on + strandat 8.164 kb on + strandat 8.417 kb on + strand, within EX31_RS13740at 8.418 kb on - strand, within EX31_RS13740at 8.418 kb on - strand, within EX31_RS13740at 8.588 kb on + strand, within EX31_RS13740at 8.589 kb on - strand, within EX31_RS13740at 8.589 kb on - strand, within EX31_RS13740at 8.660 kb on + strand, within EX31_RS13740at 8.724 kb on - strandat 8.768 kb on + strandat 8.927 kb on + strand, within EX31_RS13745at 8.927 kb on + strand, within EX31_RS13745at 8.927 kb on + strand, within EX31_RS13745at 8.928 kb on - strand, within EX31_RS13745at 9.315 kb on + strand, within EX31_RS13745at 9.434 kb on + strand, within EX31_RS13745at 9.570 kb on + strand, within EX31_RS13745at 9.571 kb on - strand, within EX31_RS13745at 9.571 kb on - strand, within EX31_RS13745at 9.571 kb on - strand, within EX31_RS13745

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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7,211 + EX31_RS13735 0.15 -0.4
7,322 + EX31_RS13735 0.28 +0.1
7,322 + EX31_RS13735 0.28 +0.2
7,323 - EX31_RS13735 0.28 -1.8
7,323 - EX31_RS13735 0.28 +1.2
7,323 - EX31_RS13735 0.28 +0.5
7,323 - EX31_RS13735 0.28 -0.7
7,357 + EX31_RS13735 0.32 +0.6
7,398 + EX31_RS13735 0.37 -0.9
7,398 + EX31_RS13735 0.37 +1.0
7,399 - EX31_RS13735 0.37 -0.1
7,399 - EX31_RS13735 0.37 +0.9
7,399 - EX31_RS13735 0.37 -0.1
7,476 + EX31_RS13735 0.46 +0.6
7,493 + EX31_RS13735 0.48 +0.8
7,493 + EX31_RS13735 0.48 -0.9
7,502 - EX31_RS13735 0.49 -1.3
7,646 - EX31_RS13735 0.65 +0.7
7,748 + EX31_RS13735 0.77 +0.1
7,764 - EX31_RS13735 0.79 +0.6
7,764 - EX31_RS13735 0.79 +0.5
7,880 + +0.6
7,881 - +0.5
7,952 + +1.2
7,952 + +0.5
7,952 + -0.7
7,953 - -1.4
7,996 - -0.2
8,025 + -0.3
8,030 + -0.0
8,030 + -1.5
8,031 - -1.8
8,031 - +0.4
8,043 + +0.5
8,045 + -0.9
8,045 + -0.3
8,046 - -0.6
8,048 - +0.0
8,048 - +0.5
8,129 + +1.0
8,129 + +0.1
8,129 + -0.2
8,130 - -0.1
8,130 - +1.0
8,132 + +0.1
8,132 + -0.3
8,132 + -0.7
8,132 + +0.3
8,132 + +0.7
8,164 + -0.7
8,164 + -1.0
8,164 + -0.1
8,417 + EX31_RS13740 0.49 -0.6
8,418 - EX31_RS13740 0.49 +0.1
8,418 - EX31_RS13740 0.49 +1.3
8,588 + EX31_RS13740 0.77 +0.6
8,589 - EX31_RS13740 0.77 -2.2
8,589 - EX31_RS13740 0.77 +0.3
8,660 + EX31_RS13740 0.89 -1.8
8,724 - +0.4
8,768 + +2.6
8,927 + EX31_RS13745 0.13 +0.2
8,927 + EX31_RS13745 0.13 -0.3
8,927 + EX31_RS13745 0.13 +0.9
8,928 - EX31_RS13745 0.13 -1.0
9,315 + EX31_RS13745 0.58 -1.4
9,434 + EX31_RS13745 0.72 -0.1
9,570 + EX31_RS13745 0.87 -1.0
9,571 - EX31_RS13745 0.87 +0.4
9,571 - EX31_RS13745 0.87 -0.7
9,571 - EX31_RS13745 0.87 +0.7

Or see this region's nucleotide sequence