Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10850 and EX31_RS10855 are separated by 232 nucleotides EX31_RS10855 and EX31_RS10860 are separated by 24 nucleotides
EX31_RS10850: EX31_RS10850 - mechanosensitive ion channel family protein, at 93,483 to 95,909
_RS10850
EX31_RS10855: EX31_RS10855 - hypothetical protein, at 96,142 to 96,957
_RS10855
EX31_RS10860: EX31_RS10860 - multidrug ABC transporter permease/ATP-binding protein, at 96,982 to 98,643
_RS10860
Position (kb) 96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 95.248 kb on + strand, within EX31_RS10850 at 95.355 kb on - strand, within EX31_RS10850 at 95.357 kb on + strand, within EX31_RS10850 at 95.357 kb on + strand, within EX31_RS10850 at 95.357 kb on + strand, within EX31_RS10850 at 95.433 kb on + strand, within EX31_RS10850 at 95.434 kb on - strand, within EX31_RS10850 at 95.531 kb on + strand, within EX31_RS10850 at 95.534 kb on + strand, within EX31_RS10850 at 95.534 kb on + strand, within EX31_RS10850 at 95.535 kb on - strand, within EX31_RS10850 at 95.757 kb on + strand at 95.822 kb on + strand at 95.909 kb on + strand at 95.910 kb on - strand at 95.939 kb on + strand at 95.990 kb on - strand at 96.027 kb on + strand at 96.028 kb on - strand at 96.078 kb on + strand at 96.078 kb on + strand at 96.078 kb on + strand at 96.078 kb on + strand at 96.078 kb on + strand at 96.078 kb on + strand at 96.078 kb on + strand at 96.079 kb on - strand at 96.079 kb on - strand at 96.079 kb on - strand at 96.079 kb on - strand at 96.079 kb on - strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.082 kb on + strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.083 kb on - strand at 96.086 kb on + strand at 96.086 kb on + strand at 96.086 kb on + strand at 96.086 kb on + strand at 96.086 kb on + strand at 96.087 kb on - strand at 96.087 kb on - strand at 96.087 kb on - strand at 96.087 kb on - strand at 96.087 kb on - strand at 96.087 kb on - strand at 96.087 kb on - strand at 96.087 kb on - strand at 96.169 kb on + strand at 96.169 kb on + strand at 96.170 kb on - strand at 96.172 kb on - strand at 96.296 kb on + strand, within EX31_RS10855 at 96.297 kb on - strand, within EX31_RS10855 at 96.297 kb on - strand, within EX31_RS10855 at 96.300 kb on + strand, within EX31_RS10855 at 96.300 kb on + strand, within EX31_RS10855 at 96.300 kb on + strand, within EX31_RS10855 at 96.300 kb on + strand, within EX31_RS10855 at 96.300 kb on + strand, within EX31_RS10855 at 96.301 kb on - strand, within EX31_RS10855 at 96.301 kb on - strand, within EX31_RS10855 at 96.301 kb on - strand, within EX31_RS10855 at 96.369 kb on + strand, within EX31_RS10855 at 96.401 kb on - strand, within EX31_RS10855 at 96.547 kb on + strand, within EX31_RS10855 at 96.548 kb on - strand, within EX31_RS10855 at 96.630 kb on + strand, within EX31_RS10855 at 96.698 kb on + strand, within EX31_RS10855 at 96.698 kb on + strand, within EX31_RS10855 at 96.699 kb on - strand, within EX31_RS10855 at 96.699 kb on - strand, within EX31_RS10855 at 96.699 kb on - strand, within EX31_RS10855 at 96.847 kb on + strand, within EX31_RS10855 at 96.848 kb on - strand, within EX31_RS10855 at 96.848 kb on - strand, within EX31_RS10855 at 96.890 kb on - strand at 96.983 kb on + strand at 97.098 kb on - strand at 97.132 kb on - strand at 97.132 kb on - strand at 97.132 kb on - strand at 97.138 kb on - strand at 97.650 kb on - strand, within EX31_RS10860 at 97.723 kb on - strand, within EX31_RS10860 at 97.723 kb on - strand, within EX31_RS10860 at 97.724 kb on + strand, within EX31_RS10860 at 97.725 kb on - strand, within EX31_RS10860 at 97.804 kb on + strand, within EX31_RS10860 at 97.805 kb on - strand, within EX31_RS10860 at 97.805 kb on - strand, within EX31_RS10860 at 97.841 kb on + strand, within EX31_RS10860 at 97.841 kb on + strand, within EX31_RS10860 at 97.842 kb on - strand, within EX31_RS10860 at 97.842 kb on - strand, within EX31_RS10860 at 97.846 kb on - strand, within EX31_RS10860 at 97.879 kb on - strand, within EX31_RS10860
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 95,248 + EX31_RS10850 0.73 +0.6 95,355 - EX31_RS10850 0.77 -0.6 95,357 + EX31_RS10850 0.77 +0.1 95,357 + EX31_RS10850 0.77 +0.6 95,357 + EX31_RS10850 0.77 -0.1 95,433 + EX31_RS10850 0.80 -0.7 95,434 - EX31_RS10850 0.80 -0.1 95,531 + EX31_RS10850 0.84 -1.6 95,534 + EX31_RS10850 0.85 -0.6 95,534 + EX31_RS10850 0.85 -0.7 95,535 - EX31_RS10850 0.85 +0.1 95,757 + +0.7 95,822 + -1.3 95,909 + +0.2 95,910 - -1.4 95,939 + -1.0 95,990 - -1.1 96,027 + +0.7 96,028 - -0.2 96,078 + -1.7 96,078 + -1.9 96,078 + +0.2 96,078 + -0.1 96,078 + -0.2 96,078 + +0.3 96,078 + -0.1 96,079 - +0.2 96,079 - +0.9 96,079 - +1.0 96,079 - +1.6 96,079 - -0.3 96,082 + -0.8 96,082 + -0.2 96,082 + -0.8 96,082 + +0.6 96,082 + +0.7 96,082 + +0.6 96,082 + -1.2 96,082 + -1.8 96,082 + +0.1 96,082 + -0.7 96,082 + -0.7 96,082 + -0.0 96,082 + -0.0 96,082 + +0.4 96,083 - -1.8 96,083 - +0.9 96,083 - +0.5 96,083 - +0.0 96,083 - -0.2 96,083 - -0.5 96,083 - +0.2 96,083 - +0.5 96,083 - -1.1 96,083 - -1.4 96,083 - -0.3 96,083 - -0.0 96,083 - +0.7 96,083 - -0.2 96,083 - +0.1 96,083 - -0.6 96,086 + +0.5 96,086 + -0.6 96,086 + -1.6 96,086 + +0.2 96,086 + -0.4 96,087 - +0.5 96,087 - -1.6 96,087 - -0.0 96,087 - -2.2 96,087 - -0.2 96,087 - +0.8 96,087 - +1.3 96,087 - -0.7 96,169 + +0.2 96,169 + +0.7 96,170 - +0.5 96,172 - -2.0 96,296 + EX31_RS10855 0.19 -1.9 96,297 - EX31_RS10855 0.19 -1.0 96,297 - EX31_RS10855 0.19 -0.9 96,300 + EX31_RS10855 0.19 -0.9 96,300 + EX31_RS10855 0.19 -1.1 96,300 + EX31_RS10855 0.19 -0.7 96,300 + EX31_RS10855 0.19 -1.0 96,300 + EX31_RS10855 0.19 +0.2 96,301 - EX31_RS10855 0.19 +1.6 96,301 - EX31_RS10855 0.19 -0.4 96,301 - EX31_RS10855 0.19 +0.6 96,369 + EX31_RS10855 0.28 -0.5 96,401 - EX31_RS10855 0.32 -1.0 96,547 + EX31_RS10855 0.50 +1.8 96,548 - EX31_RS10855 0.50 -1.9 96,630 + EX31_RS10855 0.60 +0.3 96,698 + EX31_RS10855 0.68 +0.8 96,698 + EX31_RS10855 0.68 +0.8 96,699 - EX31_RS10855 0.68 +0.4 96,699 - EX31_RS10855 0.68 -0.4 96,699 - EX31_RS10855 0.68 -1.9 96,847 + EX31_RS10855 0.86 +0.3 96,848 - EX31_RS10855 0.87 -1.0 96,848 - EX31_RS10855 0.87 -2.0 96,890 - +0.0 96,983 + +1.0 97,098 - +2.4 97,132 - +1.3 97,132 - +1.5 97,132 - -0.0 97,138 - -0.8 97,650 - EX31_RS10860 0.40 -0.9 97,723 - EX31_RS10860 0.45 +0.1 97,723 - EX31_RS10860 0.45 -3.1 97,724 + EX31_RS10860 0.45 -0.9 97,725 - EX31_RS10860 0.45 -0.6 97,804 + EX31_RS10860 0.49 -1.2 97,805 - EX31_RS10860 0.50 +1.1 97,805 - EX31_RS10860 0.50 -1.0 97,841 + EX31_RS10860 0.52 -1.2 97,841 + EX31_RS10860 0.52 -1.2 97,842 - EX31_RS10860 0.52 +0.1 97,842 - EX31_RS10860 0.52 +0.0 97,846 - EX31_RS10860 0.52 -0.4 97,879 - EX31_RS10860 0.54 -0.0
Or see this region's nucleotide sequence