Strain Fitness in Rahnella sp. WP5 around EX31_RS10855

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10850 and EX31_RS10855 are separated by 232 nucleotidesEX31_RS10855 and EX31_RS10860 are separated by 24 nucleotides EX31_RS10850: EX31_RS10850 - mechanosensitive ion channel family protein, at 93,483 to 95,909 _RS10850 EX31_RS10855: EX31_RS10855 - hypothetical protein, at 96,142 to 96,957 _RS10855 EX31_RS10860: EX31_RS10860 - multidrug ABC transporter permease/ATP-binding protein, at 96,982 to 98,643 _RS10860 Position (kb) 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 95.248 kb on + strand, within EX31_RS10850at 95.355 kb on - strand, within EX31_RS10850at 95.357 kb on + strand, within EX31_RS10850at 95.357 kb on + strand, within EX31_RS10850at 95.357 kb on + strand, within EX31_RS10850at 95.433 kb on + strand, within EX31_RS10850at 95.434 kb on - strand, within EX31_RS10850at 95.531 kb on + strand, within EX31_RS10850at 95.534 kb on + strand, within EX31_RS10850at 95.534 kb on + strand, within EX31_RS10850at 95.535 kb on - strand, within EX31_RS10850at 95.757 kb on + strandat 95.822 kb on + strandat 95.909 kb on + strandat 95.910 kb on - strandat 95.939 kb on + strandat 95.990 kb on - strandat 96.027 kb on + strandat 96.028 kb on - strandat 96.078 kb on + strandat 96.078 kb on + strandat 96.078 kb on + strandat 96.078 kb on + strandat 96.078 kb on + strandat 96.078 kb on + strandat 96.078 kb on + strandat 96.079 kb on - strandat 96.079 kb on - strandat 96.079 kb on - strandat 96.079 kb on - strandat 96.079 kb on - strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.082 kb on + strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.083 kb on - strandat 96.086 kb on + strandat 96.086 kb on + strandat 96.086 kb on + strandat 96.086 kb on + strandat 96.086 kb on + strandat 96.087 kb on - strandat 96.087 kb on - strandat 96.087 kb on - strandat 96.087 kb on - strandat 96.087 kb on - strandat 96.087 kb on - strandat 96.087 kb on - strandat 96.087 kb on - strandat 96.169 kb on + strandat 96.169 kb on + strandat 96.170 kb on - strandat 96.172 kb on - strandat 96.296 kb on + strand, within EX31_RS10855at 96.297 kb on - strand, within EX31_RS10855at 96.297 kb on - strand, within EX31_RS10855at 96.300 kb on + strand, within EX31_RS10855at 96.300 kb on + strand, within EX31_RS10855at 96.300 kb on + strand, within EX31_RS10855at 96.300 kb on + strand, within EX31_RS10855at 96.300 kb on + strand, within EX31_RS10855at 96.301 kb on - strand, within EX31_RS10855at 96.301 kb on - strand, within EX31_RS10855at 96.301 kb on - strand, within EX31_RS10855at 96.369 kb on + strand, within EX31_RS10855at 96.401 kb on - strand, within EX31_RS10855at 96.547 kb on + strand, within EX31_RS10855at 96.548 kb on - strand, within EX31_RS10855at 96.630 kb on + strand, within EX31_RS10855at 96.698 kb on + strand, within EX31_RS10855at 96.698 kb on + strand, within EX31_RS10855at 96.699 kb on - strand, within EX31_RS10855at 96.699 kb on - strand, within EX31_RS10855at 96.699 kb on - strand, within EX31_RS10855at 96.847 kb on + strand, within EX31_RS10855at 96.848 kb on - strand, within EX31_RS10855at 96.848 kb on - strand, within EX31_RS10855at 96.890 kb on - strandat 96.983 kb on + strandat 97.098 kb on - strandat 97.132 kb on - strandat 97.132 kb on - strandat 97.132 kb on - strandat 97.138 kb on - strandat 97.650 kb on - strand, within EX31_RS10860at 97.723 kb on - strand, within EX31_RS10860at 97.723 kb on - strand, within EX31_RS10860at 97.724 kb on + strand, within EX31_RS10860at 97.725 kb on - strand, within EX31_RS10860at 97.804 kb on + strand, within EX31_RS10860at 97.805 kb on - strand, within EX31_RS10860at 97.805 kb on - strand, within EX31_RS10860at 97.841 kb on + strand, within EX31_RS10860at 97.841 kb on + strand, within EX31_RS10860at 97.842 kb on - strand, within EX31_RS10860at 97.842 kb on - strand, within EX31_RS10860at 97.846 kb on - strand, within EX31_RS10860at 97.879 kb on - strand, within EX31_RS10860

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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95,248 + EX31_RS10850 0.73 +0.6
95,355 - EX31_RS10850 0.77 -0.6
95,357 + EX31_RS10850 0.77 +0.1
95,357 + EX31_RS10850 0.77 +0.6
95,357 + EX31_RS10850 0.77 -0.1
95,433 + EX31_RS10850 0.80 -0.7
95,434 - EX31_RS10850 0.80 -0.1
95,531 + EX31_RS10850 0.84 -1.6
95,534 + EX31_RS10850 0.85 -0.6
95,534 + EX31_RS10850 0.85 -0.7
95,535 - EX31_RS10850 0.85 +0.1
95,757 + +0.7
95,822 + -1.3
95,909 + +0.2
95,910 - -1.4
95,939 + -1.0
95,990 - -1.1
96,027 + +0.7
96,028 - -0.2
96,078 + -1.7
96,078 + -1.9
96,078 + +0.2
96,078 + -0.1
96,078 + -0.2
96,078 + +0.3
96,078 + -0.1
96,079 - +0.2
96,079 - +0.9
96,079 - +1.0
96,079 - +1.6
96,079 - -0.3
96,082 + -0.8
96,082 + -0.2
96,082 + -0.8
96,082 + +0.6
96,082 + +0.7
96,082 + +0.6
96,082 + -1.2
96,082 + -1.8
96,082 + +0.1
96,082 + -0.7
96,082 + -0.7
96,082 + -0.0
96,082 + -0.0
96,082 + +0.4
96,083 - -1.8
96,083 - +0.9
96,083 - +0.5
96,083 - +0.0
96,083 - -0.2
96,083 - -0.5
96,083 - +0.2
96,083 - +0.5
96,083 - -1.1
96,083 - -1.4
96,083 - -0.3
96,083 - -0.0
96,083 - +0.7
96,083 - -0.2
96,083 - +0.1
96,083 - -0.6
96,086 + +0.5
96,086 + -0.6
96,086 + -1.6
96,086 + +0.2
96,086 + -0.4
96,087 - +0.5
96,087 - -1.6
96,087 - -0.0
96,087 - -2.2
96,087 - -0.2
96,087 - +0.8
96,087 - +1.3
96,087 - -0.7
96,169 + +0.2
96,169 + +0.7
96,170 - +0.5
96,172 - -2.0
96,296 + EX31_RS10855 0.19 -1.9
96,297 - EX31_RS10855 0.19 -1.0
96,297 - EX31_RS10855 0.19 -0.9
96,300 + EX31_RS10855 0.19 -0.9
96,300 + EX31_RS10855 0.19 -1.1
96,300 + EX31_RS10855 0.19 -0.7
96,300 + EX31_RS10855 0.19 -1.0
96,300 + EX31_RS10855 0.19 +0.2
96,301 - EX31_RS10855 0.19 +1.6
96,301 - EX31_RS10855 0.19 -0.4
96,301 - EX31_RS10855 0.19 +0.6
96,369 + EX31_RS10855 0.28 -0.5
96,401 - EX31_RS10855 0.32 -1.0
96,547 + EX31_RS10855 0.50 +1.8
96,548 - EX31_RS10855 0.50 -1.9
96,630 + EX31_RS10855 0.60 +0.3
96,698 + EX31_RS10855 0.68 +0.8
96,698 + EX31_RS10855 0.68 +0.8
96,699 - EX31_RS10855 0.68 +0.4
96,699 - EX31_RS10855 0.68 -0.4
96,699 - EX31_RS10855 0.68 -1.9
96,847 + EX31_RS10855 0.86 +0.3
96,848 - EX31_RS10855 0.87 -1.0
96,848 - EX31_RS10855 0.87 -2.0
96,890 - +0.0
96,983 + +1.0
97,098 - +2.4
97,132 - +1.3
97,132 - +1.5
97,132 - -0.0
97,138 - -0.8
97,650 - EX31_RS10860 0.40 -0.9
97,723 - EX31_RS10860 0.45 +0.1
97,723 - EX31_RS10860 0.45 -3.1
97,724 + EX31_RS10860 0.45 -0.9
97,725 - EX31_RS10860 0.45 -0.6
97,804 + EX31_RS10860 0.49 -1.2
97,805 - EX31_RS10860 0.50 +1.1
97,805 - EX31_RS10860 0.50 -1.0
97,841 + EX31_RS10860 0.52 -1.2
97,841 + EX31_RS10860 0.52 -1.2
97,842 - EX31_RS10860 0.52 +0.1
97,842 - EX31_RS10860 0.52 +0.0
97,846 - EX31_RS10860 0.52 -0.4
97,879 - EX31_RS10860 0.54 -0.0

Or see this region's nucleotide sequence