Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09650 and EX31_RS09655 are separated by 78 nucleotides EX31_RS09655 and EX31_RS09660 are separated by 322 nucleotides EX31_RS09660 and EX31_RS09665 are separated by 206 nucleotides EX31_RS09665 and EX31_RS09670 are separated by 85 nucleotides
EX31_RS09650: EX31_RS09650 - GrxA family glutaredoxin, at 132,410 to 132,676
_RS09650
EX31_RS09655: EX31_RS09655 - membrane protein, at 132,755 to 133,126
_RS09655
EX31_RS09660: EX31_RS09660 - aspartate:alanine antiporter, at 133,449 to 135,131
_RS09660
EX31_RS09665: EX31_RS09665 - hypothetical protein, at 135,338 to 135,649
_RS09665
EX31_RS09670: EX31_RS09670 - bleomycin resistance protein, at 135,735 to 136,100
_RS09670
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 132.454 kb on - strand, within EX31_RS09650 at 132.695 kb on + strand at 132.695 kb on + strand at 132.695 kb on + strand at 132.696 kb on - strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.697 kb on + strand at 132.742 kb on - strand at 132.742 kb on - strand at 132.742 kb on - strand at 132.827 kb on + strand, within EX31_RS09655 at 133.040 kb on - strand, within EX31_RS09655 at 133.060 kb on + strand, within EX31_RS09655 at 133.130 kb on - strand at 133.172 kb on + strand at 133.269 kb on - strand at 133.411 kb on + strand at 133.431 kb on - strand at 133.486 kb on - strand at 133.495 kb on + strand at 133.495 kb on + strand at 133.498 kb on + strand at 133.499 kb on - strand at 133.576 kb on + strand at 133.579 kb on + strand at 133.617 kb on - strand at 133.619 kb on + strand, within EX31_RS09660 at 133.622 kb on + strand, within EX31_RS09660 at 133.881 kb on - strand, within EX31_RS09660 at 133.947 kb on + strand, within EX31_RS09660 at 133.947 kb on + strand, within EX31_RS09660 at 134.079 kb on + strand, within EX31_RS09660 at 134.163 kb on + strand, within EX31_RS09660 at 134.163 kb on + strand, within EX31_RS09660 at 134.181 kb on + strand, within EX31_RS09660 at 134.181 kb on + strand, within EX31_RS09660 at 134.181 kb on + strand, within EX31_RS09660 at 134.185 kb on + strand, within EX31_RS09660 at 134.185 kb on + strand, within EX31_RS09660 at 134.185 kb on + strand, within EX31_RS09660 at 134.351 kb on + strand, within EX31_RS09660 at 134.381 kb on + strand, within EX31_RS09660 at 134.486 kb on + strand, within EX31_RS09660 at 134.487 kb on - strand, within EX31_RS09660 at 134.499 kb on - strand, within EX31_RS09660 at 134.742 kb on - strand, within EX31_RS09660 at 134.753 kb on + strand, within EX31_RS09660 at 134.934 kb on + strand, within EX31_RS09660 at 134.934 kb on + strand, within EX31_RS09660 at 134.934 kb on + strand, within EX31_RS09660 at 134.935 kb on - strand, within EX31_RS09660 at 134.935 kb on - strand, within EX31_RS09660 at 135.064 kb on - strand at 135.079 kb on + strand at 135.079 kb on + strand at 135.080 kb on - strand at 135.080 kb on - strand at 135.082 kb on + strand at 135.082 kb on + strand at 135.105 kb on - strand at 135.225 kb on + strand at 135.327 kb on + strand at 135.328 kb on - strand at 135.392 kb on + strand, within EX31_RS09665 at 135.393 kb on - strand, within EX31_RS09665 at 135.393 kb on - strand, within EX31_RS09665 at 135.418 kb on - strand, within EX31_RS09665 at 135.481 kb on - strand, within EX31_RS09665 at 135.481 kb on - strand, within EX31_RS09665 at 135.873 kb on - strand, within EX31_RS09670 at 136.012 kb on + strand, within EX31_RS09670 at 136.012 kb on + strand, within EX31_RS09670 at 136.013 kb on - strand, within EX31_RS09670 at 136.013 kb on - strand, within EX31_RS09670 at 136.080 kb on - strand at 136.119 kb on - strand at 136.119 kb on - strand at 136.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 132,454 - EX31_RS09650 0.16 -1.0 132,695 + +0.2 132,695 + +0.4 132,695 + -0.4 132,696 - -0.4 132,697 + +0.3 132,697 + -0.0 132,697 + +0.4 132,697 + +1.4 132,697 + -2.8 132,697 + +0.4 132,697 + -0.3 132,697 + +0.4 132,697 + -0.7 132,697 + -0.3 132,742 - +1.0 132,742 - +0.3 132,742 - -1.2 132,827 + EX31_RS09655 0.19 -1.5 133,040 - EX31_RS09655 0.77 +0.5 133,060 + EX31_RS09655 0.82 +0.5 133,130 - -0.0 133,172 + +0.5 133,269 - +0.3 133,411 + +0.0 133,431 - +0.3 133,486 - -0.3 133,495 + +0.4 133,495 + +0.3 133,498 + +0.4 133,499 - +0.5 133,576 + -0.8 133,579 + -0.7 133,617 - +0.4 133,619 + EX31_RS09660 0.10 +0.0 133,622 + EX31_RS09660 0.10 -0.1 133,881 - EX31_RS09660 0.26 -1.6 133,947 + EX31_RS09660 0.30 -0.4 133,947 + EX31_RS09660 0.30 +1.0 134,079 + EX31_RS09660 0.37 -1.7 134,163 + EX31_RS09660 0.42 -0.1 134,163 + EX31_RS09660 0.42 +1.5 134,181 + EX31_RS09660 0.43 -0.2 134,181 + EX31_RS09660 0.43 +0.6 134,181 + EX31_RS09660 0.43 -1.7 134,185 + EX31_RS09660 0.44 -1.8 134,185 + EX31_RS09660 0.44 -0.1 134,185 + EX31_RS09660 0.44 -1.5 134,351 + EX31_RS09660 0.54 -3.2 134,381 + EX31_RS09660 0.55 -0.5 134,486 + EX31_RS09660 0.62 -0.6 134,487 - EX31_RS09660 0.62 -1.7 134,499 - EX31_RS09660 0.62 -0.7 134,742 - EX31_RS09660 0.77 +0.7 134,753 + EX31_RS09660 0.77 -0.5 134,934 + EX31_RS09660 0.88 -0.3 134,934 + EX31_RS09660 0.88 -0.6 134,934 + EX31_RS09660 0.88 +0.7 134,935 - EX31_RS09660 0.88 -2.0 134,935 - EX31_RS09660 0.88 -0.9 135,064 - -0.3 135,079 + +0.6 135,079 + -2.2 135,080 - -0.5 135,080 - -1.6 135,082 + -0.2 135,082 + -0.7 135,105 - -0.0 135,225 + -0.0 135,327 + +2.2 135,328 - -0.0 135,392 + EX31_RS09665 0.17 -0.7 135,393 - EX31_RS09665 0.18 -0.5 135,393 - EX31_RS09665 0.18 -0.3 135,418 - EX31_RS09665 0.26 -0.4 135,481 - EX31_RS09665 0.46 -0.5 135,481 - EX31_RS09665 0.46 -0.5 135,873 - EX31_RS09670 0.38 +0.2 136,012 + EX31_RS09670 0.76 +0.4 136,012 + EX31_RS09670 0.76 -0.7 136,013 - EX31_RS09670 0.76 +1.0 136,013 - EX31_RS09670 0.76 -1.3 136,080 - -2.8 136,119 - -0.7 136,119 - -1.3 136,119 - -0.6
Or see this region's nucleotide sequence