Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09260 and EX31_RS09265 are separated by 30 nucleotides EX31_RS09265 and EX31_RS09270 overlap by 1 nucleotides EX31_RS09270 and EX31_RS09275 are separated by 284 nucleotides
EX31_RS09260: EX31_RS09260 - ABC transporter ATP-binding protein, at 50,795 to 52,663
_RS09260
EX31_RS09265: EX31_RS09265 - L-Ala-D/L-Glu epimerase, at 52,694 to 53,659
_RS09265
EX31_RS09270: EX31_RS09270 - DUF1611 domain-containing protein, at 53,659 to 54,669
_RS09270
EX31_RS09275: EX31_RS09275 - porin, at 54,954 to 56,033
_RS09275
Position (kb) 53
54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 52.683 kb on - strand at 52.925 kb on - strand, within EX31_RS09265 at 52.939 kb on - strand, within EX31_RS09265 at 53.318 kb on - strand, within EX31_RS09265 at 53.467 kb on + strand, within EX31_RS09265 at 53.467 kb on + strand, within EX31_RS09265 at 53.468 kb on - strand, within EX31_RS09265 at 53.562 kb on + strand, within EX31_RS09265 at 53.570 kb on + strand at 53.570 kb on + strand at 53.571 kb on - strand at 53.571 kb on - strand at 53.794 kb on - strand, within EX31_RS09270 at 53.904 kb on + strand, within EX31_RS09270 at 53.938 kb on + strand, within EX31_RS09270 at 53.938 kb on + strand, within EX31_RS09270 at 53.939 kb on - strand, within EX31_RS09270 at 53.939 kb on - strand, within EX31_RS09270 at 53.996 kb on + strand, within EX31_RS09270 at 54.204 kb on - strand, within EX31_RS09270 at 54.321 kb on + strand, within EX31_RS09270 at 54.648 kb on - strand at 54.648 kb on - strand at 54.648 kb on - strand at 54.754 kb on + strand at 54.755 kb on - strand at 54.755 kb on - strand at 54.794 kb on + strand at 54.799 kb on - strand at 54.869 kb on + strand at 54.937 kb on + strand at 54.938 kb on - strand at 54.943 kb on - strand at 54.956 kb on - strand at 54.956 kb on - strand at 54.956 kb on - strand at 54.976 kb on - strand at 54.976 kb on - strand at 55.039 kb on + strand at 55.039 kb on + strand at 55.039 kb on + strand at 55.040 kb on - strand at 55.040 kb on - strand at 55.040 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.049 kb on - strand at 55.054 kb on + strand at 55.054 kb on + strand at 55.054 kb on + strand at 55.054 kb on + strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.055 kb on - strand at 55.073 kb on - strand, within EX31_RS09275 at 55.076 kb on - strand, within EX31_RS09275 at 55.076 kb on - strand, within EX31_RS09275 at 55.096 kb on + strand, within EX31_RS09275 at 55.097 kb on - strand, within EX31_RS09275 at 55.097 kb on - strand, within EX31_RS09275 at 55.143 kb on - strand, within EX31_RS09275 at 55.201 kb on - strand, within EX31_RS09275 at 55.207 kb on + strand, within EX31_RS09275 at 55.228 kb on + strand, within EX31_RS09275 at 55.280 kb on - strand, within EX31_RS09275 at 55.313 kb on - strand, within EX31_RS09275 at 55.382 kb on + strand, within EX31_RS09275 at 55.383 kb on - strand, within EX31_RS09275 at 55.383 kb on - strand, within EX31_RS09275 at 55.406 kb on + strand, within EX31_RS09275 at 55.479 kb on - strand, within EX31_RS09275 at 55.509 kb on - strand, within EX31_RS09275 at 55.571 kb on - strand, within EX31_RS09275 at 55.616 kb on + strand, within EX31_RS09275 at 55.623 kb on - strand, within EX31_RS09275
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 52,683 - -0.8 52,925 - EX31_RS09265 0.24 -0.7 52,939 - EX31_RS09265 0.25 +0.3 53,318 - EX31_RS09265 0.65 +0.1 53,467 + EX31_RS09265 0.80 -1.6 53,467 + EX31_RS09265 0.80 -0.1 53,468 - EX31_RS09265 0.80 +1.6 53,562 + EX31_RS09265 0.90 +1.3 53,570 + +0.5 53,570 + -0.3 53,571 - -1.1 53,571 - +1.1 53,794 - EX31_RS09270 0.13 +0.2 53,904 + EX31_RS09270 0.24 -0.8 53,938 + EX31_RS09270 0.28 -0.3 53,938 + EX31_RS09270 0.28 +0.1 53,939 - EX31_RS09270 0.28 -0.5 53,939 - EX31_RS09270 0.28 -0.8 53,996 + EX31_RS09270 0.33 -0.1 54,204 - EX31_RS09270 0.54 +0.5 54,321 + EX31_RS09270 0.65 -1.0 54,648 - -2.2 54,648 - -0.6 54,648 - +0.8 54,754 + -0.8 54,755 - +0.0 54,755 - -0.5 54,794 + +0.3 54,799 - -0.6 54,869 + +0.1 54,937 + +0.5 54,938 - -1.2 54,943 - +1.4 54,956 - -0.4 54,956 - -0.9 54,956 - +1.8 54,976 - -1.1 54,976 - +1.3 55,039 + +0.2 55,039 + -1.5 55,039 + +1.0 55,040 - +0.1 55,040 - -0.9 55,040 - +0.6 55,049 - +0.2 55,049 - -0.3 55,049 - -0.1 55,049 - -1.3 55,049 - -1.2 55,049 - +0.1 55,049 - +0.2 55,049 - -2.4 55,049 - +0.3 55,049 - -2.9 55,049 - -1.5 55,049 - -1.0 55,049 - +0.8 55,049 - +1.1 55,054 + -1.3 55,054 + -2.3 55,054 + +1.1 55,054 + +2.3 55,055 - +0.4 55,055 - -0.5 55,055 - +0.1 55,055 - +0.4 55,055 - -1.5 55,055 - +0.4 55,055 - +0.7 55,055 - -0.1 55,055 - +0.3 55,055 - -0.0 55,055 - +0.2 55,055 - +0.0 55,055 - +0.2 55,055 - +0.6 55,055 - -2.0 55,073 - EX31_RS09275 0.11 -1.0 55,076 - EX31_RS09275 0.11 -0.2 55,076 - EX31_RS09275 0.11 -0.3 55,096 + EX31_RS09275 0.13 +0.1 55,097 - EX31_RS09275 0.13 +0.2 55,097 - EX31_RS09275 0.13 -0.6 55,143 - EX31_RS09275 0.17 -0.6 55,201 - EX31_RS09275 0.23 +0.2 55,207 + EX31_RS09275 0.23 -1.4 55,228 + EX31_RS09275 0.25 -0.5 55,280 - EX31_RS09275 0.30 -0.5 55,313 - EX31_RS09275 0.33 +0.0 55,382 + EX31_RS09275 0.40 +0.7 55,383 - EX31_RS09275 0.40 -0.8 55,383 - EX31_RS09275 0.40 -0.9 55,406 + EX31_RS09275 0.42 +0.3 55,479 - EX31_RS09275 0.49 +0.6 55,509 - EX31_RS09275 0.51 -0.5 55,571 - EX31_RS09275 0.57 +0.9 55,616 + EX31_RS09275 0.61 +0.0 55,623 - EX31_RS09275 0.62 -0.7
Or see this region's nucleotide sequence