Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09240 and EX31_RS09245 are separated by 30 nucleotides EX31_RS09245 and EX31_RS09250 are separated by 9 nucleotides EX31_RS09250 and EX31_RS09255 are separated by 142 nucleotides
EX31_RS09240: EX31_RS09240 - D-aminopeptidase, at 46,135 to 47,199
_RS09240
EX31_RS09245: EX31_RS09245 - ABC transporter permease subunit, at 47,230 to 48,141
_RS09245
EX31_RS09250: EX31_RS09250 - ABC transporter permease subunit, at 48,151 to 49,071
_RS09250
EX31_RS09255: EX31_RS09255 - glutathione ABC transporter substrate-binding protein, at 49,214 to 50,758
_RS09255
Position (kb) 48
49
50 Strain fitness (log2 ratio) -2
-1
0
1
2 at 47.228 kb on + strand at 47.229 kb on - strand at 47.231 kb on + strand at 47.232 kb on - strand at 47.283 kb on + strand at 47.284 kb on - strand at 47.355 kb on + strand, within EX31_RS09245 at 47.355 kb on + strand, within EX31_RS09245 at 47.355 kb on + strand, within EX31_RS09245 at 47.356 kb on - strand, within EX31_RS09245 at 47.356 kb on - strand, within EX31_RS09245 at 47.358 kb on + strand, within EX31_RS09245 at 47.446 kb on - strand, within EX31_RS09245 at 47.458 kb on - strand, within EX31_RS09245 at 47.506 kb on - strand, within EX31_RS09245 at 47.586 kb on + strand, within EX31_RS09245 at 47.586 kb on + strand, within EX31_RS09245 at 47.587 kb on - strand, within EX31_RS09245 at 47.714 kb on - strand, within EX31_RS09245 at 47.762 kb on + strand, within EX31_RS09245 at 47.849 kb on + strand, within EX31_RS09245 at 47.849 kb on + strand, within EX31_RS09245 at 47.850 kb on - strand, within EX31_RS09245 at 47.850 kb on - strand, within EX31_RS09245 at 48.076 kb on - strand at 48.111 kb on + strand at 48.433 kb on + strand, within EX31_RS09250 at 48.461 kb on + strand, within EX31_RS09250 at 48.462 kb on - strand, within EX31_RS09250 at 48.552 kb on + strand, within EX31_RS09250 at 48.553 kb on - strand, within EX31_RS09250 at 48.553 kb on - strand, within EX31_RS09250 at 48.553 kb on - strand, within EX31_RS09250 at 48.570 kb on + strand, within EX31_RS09250 at 48.809 kb on - strand, within EX31_RS09250 at 48.809 kb on - strand, within EX31_RS09250 at 48.830 kb on + strand, within EX31_RS09250 at 48.959 kb on + strand, within EX31_RS09250 at 48.960 kb on - strand, within EX31_RS09250 at 49.071 kb on + strand at 49.071 kb on + strand at 49.071 kb on + strand at 49.137 kb on + strand at 49.167 kb on + strand at 49.220 kb on - strand at 49.220 kb on - strand at 49.363 kb on - strand at 49.437 kb on + strand, within EX31_RS09255 at 49.437 kb on + strand, within EX31_RS09255 at 49.438 kb on - strand, within EX31_RS09255 at 49.440 kb on + strand, within EX31_RS09255 at 49.440 kb on + strand, within EX31_RS09255 at 49.440 kb on + strand, within EX31_RS09255 at 49.441 kb on - strand, within EX31_RS09255 at 49.450 kb on + strand, within EX31_RS09255 at 49.451 kb on - strand, within EX31_RS09255 at 49.451 kb on - strand, within EX31_RS09255 at 49.452 kb on + strand, within EX31_RS09255 at 49.453 kb on - strand, within EX31_RS09255 at 49.539 kb on + strand, within EX31_RS09255 at 49.676 kb on - strand, within EX31_RS09255 at 49.766 kb on - strand, within EX31_RS09255 at 49.766 kb on - strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.767 kb on + strand, within EX31_RS09255 at 49.768 kb on - strand, within EX31_RS09255 at 49.768 kb on - strand, within EX31_RS09255 at 49.768 kb on - strand, within EX31_RS09255 at 49.768 kb on - strand, within EX31_RS09255 at 49.883 kb on - strand, within EX31_RS09255 at 49.888 kb on - strand, within EX31_RS09255 at 49.892 kb on - strand, within EX31_RS09255 at 49.950 kb on + strand, within EX31_RS09255 at 49.951 kb on - strand, within EX31_RS09255 at 49.951 kb on - strand, within EX31_RS09255 at 49.951 kb on - strand, within EX31_RS09255 at 49.951 kb on - strand, within EX31_RS09255 at 49.959 kb on + strand, within EX31_RS09255 at 49.959 kb on + strand, within EX31_RS09255 at 49.959 kb on + strand, within EX31_RS09255 at 49.959 kb on + strand, within EX31_RS09255 at 49.959 kb on + strand, within EX31_RS09255 at 49.960 kb on - strand, within EX31_RS09255 at 49.960 kb on - strand, within EX31_RS09255 at 49.960 kb on - strand, within EX31_RS09255 at 49.960 kb on - strand, within EX31_RS09255 at 49.960 kb on - strand, within EX31_RS09255 at 49.981 kb on + strand, within EX31_RS09255
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 47,228 + -0.6 47,229 - +0.6 47,231 + +0.4 47,232 - -1.0 47,283 + -1.6 47,284 - +0.5 47,355 + EX31_RS09245 0.14 +0.0 47,355 + EX31_RS09245 0.14 +0.1 47,355 + EX31_RS09245 0.14 -0.2 47,356 - EX31_RS09245 0.14 -2.3 47,356 - EX31_RS09245 0.14 -0.2 47,358 + EX31_RS09245 0.14 +1.5 47,446 - EX31_RS09245 0.24 +0.5 47,458 - EX31_RS09245 0.25 +0.1 47,506 - EX31_RS09245 0.30 -0.9 47,586 + EX31_RS09245 0.39 -0.1 47,586 + EX31_RS09245 0.39 +0.2 47,587 - EX31_RS09245 0.39 -0.3 47,714 - EX31_RS09245 0.53 +0.8 47,762 + EX31_RS09245 0.58 -2.0 47,849 + EX31_RS09245 0.68 +0.6 47,849 + EX31_RS09245 0.68 +0.9 47,850 - EX31_RS09245 0.68 -1.3 47,850 - EX31_RS09245 0.68 -0.7 48,076 - +0.1 48,111 + +0.0 48,433 + EX31_RS09250 0.31 -1.6 48,461 + EX31_RS09250 0.34 -0.2 48,462 - EX31_RS09250 0.34 +1.4 48,552 + EX31_RS09250 0.44 -0.2 48,553 - EX31_RS09250 0.44 -1.1 48,553 - EX31_RS09250 0.44 -0.6 48,553 - EX31_RS09250 0.44 -0.6 48,570 + EX31_RS09250 0.45 +1.1 48,809 - EX31_RS09250 0.71 +0.4 48,809 - EX31_RS09250 0.71 -0.6 48,830 + EX31_RS09250 0.74 -2.7 48,959 + EX31_RS09250 0.88 -1.0 48,960 - EX31_RS09250 0.88 -2.4 49,071 + +0.2 49,071 + -0.3 49,071 + -2.0 49,137 + -1.2 49,167 + +0.3 49,220 - -0.7 49,220 - +0.2 49,363 - -2.0 49,437 + EX31_RS09255 0.14 -0.2 49,437 + EX31_RS09255 0.14 -0.7 49,438 - EX31_RS09255 0.14 +0.9 49,440 + EX31_RS09255 0.15 -1.4 49,440 + EX31_RS09255 0.15 +0.6 49,440 + EX31_RS09255 0.15 +0.7 49,441 - EX31_RS09255 0.15 -0.4 49,450 + EX31_RS09255 0.15 -0.3 49,451 - EX31_RS09255 0.15 +0.9 49,451 - EX31_RS09255 0.15 +0.4 49,452 + EX31_RS09255 0.15 -1.2 49,453 - EX31_RS09255 0.15 +1.8 49,539 + EX31_RS09255 0.21 +0.2 49,676 - EX31_RS09255 0.30 +1.1 49,766 - EX31_RS09255 0.36 +1.3 49,766 - EX31_RS09255 0.36 +1.1 49,767 + EX31_RS09255 0.36 +0.7 49,767 + EX31_RS09255 0.36 +0.3 49,767 + EX31_RS09255 0.36 +0.4 49,767 + EX31_RS09255 0.36 +1.3 49,767 + EX31_RS09255 0.36 -0.3 49,767 + EX31_RS09255 0.36 -0.2 49,767 + EX31_RS09255 0.36 -0.1 49,767 + EX31_RS09255 0.36 -0.2 49,768 - EX31_RS09255 0.36 -0.6 49,768 - EX31_RS09255 0.36 +0.5 49,768 - EX31_RS09255 0.36 +0.6 49,768 - EX31_RS09255 0.36 +0.5 49,883 - EX31_RS09255 0.43 +0.7 49,888 - EX31_RS09255 0.44 +0.7 49,892 - EX31_RS09255 0.44 -0.3 49,950 + EX31_RS09255 0.48 +1.5 49,951 - EX31_RS09255 0.48 +0.1 49,951 - EX31_RS09255 0.48 +0.2 49,951 - EX31_RS09255 0.48 +0.7 49,951 - EX31_RS09255 0.48 -0.2 49,959 + EX31_RS09255 0.48 -0.0 49,959 + EX31_RS09255 0.48 +0.3 49,959 + EX31_RS09255 0.48 -1.0 49,959 + EX31_RS09255 0.48 +0.9 49,959 + EX31_RS09255 0.48 -0.6 49,960 - EX31_RS09255 0.48 -1.7 49,960 - EX31_RS09255 0.48 -1.4 49,960 - EX31_RS09255 0.48 +0.6 49,960 - EX31_RS09255 0.48 +1.2 49,960 - EX31_RS09255 0.48 -0.3 49,981 + EX31_RS09255 0.50 -1.9
Or see this region's nucleotide sequence