Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07085 and EX31_RS07090 are separated by 4 nucleotides EX31_RS07090 and EX31_RS07095 are separated by 132 nucleotides EX31_RS07095 and EX31_RS07100 are separated by 52 nucleotides
EX31_RS07085: EX31_RS07085 - LysR family transcriptional regulator, at 210,898 to 211,803
_RS07085
EX31_RS07090: EX31_RS07090 - YnfA family protein, at 211,808 to 212,134
_RS07090
EX31_RS07095: EX31_RS07095 - DUF1283 family protein, at 212,267 to 212,635
_RS07095
EX31_RS07100: EX31_RS07100 - DUF1161 domain-containing protein, at 212,688 to 212,981
_RS07100
Position (kb) 211
212
213 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 210.810 kb on - strand at 210.859 kb on + strand at 210.859 kb on + strand at 210.859 kb on + strand at 210.860 kb on - strand at 210.863 kb on + strand at 211.360 kb on - strand, within EX31_RS07085 at 211.525 kb on + strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.526 kb on - strand, within EX31_RS07085 at 211.566 kb on + strand, within EX31_RS07085 at 211.566 kb on + strand, within EX31_RS07085 at 211.567 kb on - strand, within EX31_RS07085 at 211.637 kb on + strand, within EX31_RS07085 at 211.637 kb on + strand, within EX31_RS07085 at 211.638 kb on - strand, within EX31_RS07085 at 211.649 kb on + strand, within EX31_RS07085 at 211.935 kb on + strand, within EX31_RS07090 at 211.936 kb on - strand, within EX31_RS07090 at 211.936 kb on - strand, within EX31_RS07090 at 211.936 kb on - strand, within EX31_RS07090 at 211.956 kb on + strand, within EX31_RS07090 at 211.956 kb on + strand, within EX31_RS07090 at 212.068 kb on - strand, within EX31_RS07090 at 212.068 kb on - strand, within EX31_RS07090 at 212.073 kb on - strand, within EX31_RS07090 at 212.135 kb on - strand at 212.135 kb on - strand at 212.135 kb on - strand at 212.166 kb on + strand at 212.171 kb on + strand at 212.171 kb on + strand at 212.172 kb on - strand at 212.217 kb on + strand at 212.217 kb on + strand at 212.217 kb on + strand at 212.217 kb on + strand at 212.218 kb on - strand at 212.218 kb on - strand at 212.219 kb on + strand at 212.220 kb on - strand at 212.220 kb on - strand at 212.228 kb on + strand at 212.228 kb on + strand at 212.229 kb on - strand at 212.247 kb on + strand at 212.248 kb on - strand at 212.253 kb on - strand at 212.272 kb on + strand at 212.272 kb on + strand at 212.272 kb on + strand at 212.272 kb on + strand at 212.272 kb on + strand at 212.272 kb on + strand at 212.272 kb on + strand at 212.273 kb on - strand at 212.326 kb on + strand, within EX31_RS07095 at 212.326 kb on + strand, within EX31_RS07095 at 212.326 kb on + strand, within EX31_RS07095 at 212.513 kb on + strand, within EX31_RS07095 at 212.513 kb on + strand, within EX31_RS07095 at 212.570 kb on + strand, within EX31_RS07095 at 212.633 kb on + strand at 212.647 kb on + strand at 212.647 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.655 kb on + strand at 212.656 kb on - strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.659 kb on + strand at 212.723 kb on + strand, within EX31_RS07100 at 212.764 kb on + strand, within EX31_RS07100 at 212.819 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.907 kb on + strand, within EX31_RS07100 at 212.909 kb on + strand, within EX31_RS07100 at 212.909 kb on + strand, within EX31_RS07100 at 212.979 kb on + strand at 212.982 kb on + strand at 212.982 kb on + strand at 212.982 kb on + strand at 212.983 kb on - strand at 213.071 kb on + strand at 213.072 kb on - strand at 213.074 kb on + strand at 213.074 kb on + strand at 213.074 kb on + strand at 213.074 kb on + strand at 213.081 kb on + strand at 213.081 kb on + strand at 213.081 kb on + strand at 213.081 kb on + strand at 213.082 kb on - strand at 213.082 kb on - strand at 213.086 kb on + strand at 213.087 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 210,810 - -2.3 210,859 + +0.2 210,859 + -0.7 210,859 + -0.6 210,860 - +0.3 210,863 + +0.0 211,360 - EX31_RS07085 0.51 -0.8 211,525 + EX31_RS07085 0.69 +1.6 211,526 - EX31_RS07085 0.69 -1.0 211,526 - EX31_RS07085 0.69 -0.3 211,526 - EX31_RS07085 0.69 +0.2 211,526 - EX31_RS07085 0.69 +0.1 211,526 - EX31_RS07085 0.69 -0.8 211,566 + EX31_RS07085 0.74 -0.1 211,566 + EX31_RS07085 0.74 -0.3 211,567 - EX31_RS07085 0.74 -0.7 211,637 + EX31_RS07085 0.82 -0.6 211,637 + EX31_RS07085 0.82 -1.0 211,638 - EX31_RS07085 0.82 +0.2 211,649 + EX31_RS07085 0.83 +0.2 211,935 + EX31_RS07090 0.39 -0.2 211,936 - EX31_RS07090 0.39 -0.3 211,936 - EX31_RS07090 0.39 -3.0 211,936 - EX31_RS07090 0.39 +0.4 211,956 + EX31_RS07090 0.45 -0.2 211,956 + EX31_RS07090 0.45 -2.1 212,068 - EX31_RS07090 0.80 +0.4 212,068 - EX31_RS07090 0.80 -0.1 212,073 - EX31_RS07090 0.81 -0.6 212,135 - -0.5 212,135 - +0.9 212,135 - -1.8 212,166 + -0.1 212,171 + +0.3 212,171 + -0.6 212,172 - -0.7 212,217 + -0.3 212,217 + -3.2 212,217 + +0.3 212,217 + +0.3 212,218 - +0.4 212,218 - -0.1 212,219 + -0.3 212,220 - -2.6 212,220 - +0.4 212,228 + -0.6 212,228 + +1.0 212,229 - -0.8 212,247 + -0.7 212,248 - -1.7 212,253 - +0.6 212,272 + +1.0 212,272 + -0.6 212,272 + -0.0 212,272 + -0.5 212,272 + +1.6 212,272 + -0.2 212,272 + +1.5 212,273 - -0.7 212,326 + EX31_RS07095 0.16 +1.1 212,326 + EX31_RS07095 0.16 +1.3 212,326 + EX31_RS07095 0.16 -1.5 212,513 + EX31_RS07095 0.67 +0.6 212,513 + EX31_RS07095 0.67 -0.1 212,570 + EX31_RS07095 0.82 -0.2 212,633 + -0.7 212,647 + -0.4 212,647 + +0.9 212,655 + -1.0 212,655 + +0.4 212,655 + +0.4 212,655 + -1.4 212,655 + -0.8 212,656 - +0.8 212,659 + -0.2 212,659 + -0.1 212,659 + -1.4 212,659 + -1.0 212,659 + +0.5 212,659 + +0.4 212,723 + EX31_RS07100 0.12 +0.4 212,764 + EX31_RS07100 0.26 +0.2 212,819 + EX31_RS07100 0.45 -0.2 212,907 + EX31_RS07100 0.74 -2.3 212,907 + EX31_RS07100 0.74 -0.3 212,907 + EX31_RS07100 0.74 -0.3 212,907 + EX31_RS07100 0.74 +0.6 212,907 + EX31_RS07100 0.74 +0.4 212,907 + EX31_RS07100 0.74 -0.5 212,907 + EX31_RS07100 0.74 -1.1 212,909 + EX31_RS07100 0.75 -0.8 212,909 + EX31_RS07100 0.75 +0.6 212,979 + +0.8 212,982 + +0.2 212,982 + -0.1 212,982 + -0.5 212,983 - -1.3 213,071 + -0.5 213,072 - -0.2 213,074 + -0.6 213,074 + +0.0 213,074 + -0.1 213,074 + -0.5 213,081 + -0.0 213,081 + +0.5 213,081 + -0.7 213,081 + +0.7 213,082 - -1.6 213,082 - +0.5 213,086 + +0.1 213,087 - +0.4
Or see this region's nucleotide sequence