Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06450 and EX31_RS06455 are separated by 16 nucleotides EX31_RS06455 and EX31_RS06460 overlap by 4 nucleotides EX31_RS06460 and EX31_RS06465 are separated by 20 nucleotides
EX31_RS06450: EX31_RS06450 - ABC transporter substrate-binding protein, at 59,636 to 60,916
_RS06450
EX31_RS06455: EX31_RS06455 - sugar ABC transporter permease, at 60,933 to 61,844
_RS06455
EX31_RS06460: EX31_RS06460 - carbohydrate ABC transporter permease, at 61,841 to 62,656
_RS06460
EX31_RS06465: EX31_RS06465 - hypothetical protein, at 62,677 to 63,606
_RS06465
Position (kb) 61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 60.914 kb on + strand at 60.915 kb on - strand at 60.986 kb on - strand at 60.994 kb on - strand at 61.160 kb on + strand, within EX31_RS06455 at 61.160 kb on + strand, within EX31_RS06455 at 61.160 kb on + strand, within EX31_RS06455 at 61.160 kb on + strand, within EX31_RS06455 at 61.160 kb on + strand, within EX31_RS06455 at 61.161 kb on - strand, within EX31_RS06455 at 61.161 kb on - strand, within EX31_RS06455 at 61.161 kb on - strand, within EX31_RS06455 at 61.434 kb on + strand, within EX31_RS06455 at 61.561 kb on - strand, within EX31_RS06455 at 61.561 kb on - strand, within EX31_RS06455 at 61.607 kb on - strand, within EX31_RS06455 at 61.607 kb on - strand, within EX31_RS06455 at 61.607 kb on - strand, within EX31_RS06455 at 61.710 kb on + strand, within EX31_RS06455 at 61.711 kb on - strand, within EX31_RS06455 at 61.711 kb on - strand, within EX31_RS06455 at 61.775 kb on - strand at 61.900 kb on - strand at 62.036 kb on + strand, within EX31_RS06460 at 62.050 kb on + strand, within EX31_RS06460 at 62.050 kb on + strand, within EX31_RS06460 at 62.178 kb on + strand, within EX31_RS06460 at 62.178 kb on + strand, within EX31_RS06460 at 62.207 kb on + strand, within EX31_RS06460 at 62.208 kb on - strand, within EX31_RS06460 at 62.208 kb on - strand, within EX31_RS06460 at 62.308 kb on + strand, within EX31_RS06460 at 62.308 kb on + strand, within EX31_RS06460 at 62.309 kb on - strand, within EX31_RS06460 at 62.366 kb on + strand, within EX31_RS06460 at 62.367 kb on - strand, within EX31_RS06460 at 62.367 kb on - strand, within EX31_RS06460 at 62.385 kb on - strand, within EX31_RS06460 at 62.408 kb on + strand, within EX31_RS06460 at 62.466 kb on + strand, within EX31_RS06460 at 62.598 kb on + strand at 62.635 kb on + strand at 62.824 kb on + strand, within EX31_RS06465 at 62.855 kb on - strand, within EX31_RS06465 at 62.875 kb on - strand, within EX31_RS06465 at 62.901 kb on + strand, within EX31_RS06465 at 62.902 kb on - strand, within EX31_RS06465 at 62.986 kb on + strand, within EX31_RS06465 at 63.084 kb on - strand, within EX31_RS06465 at 63.095 kb on - strand, within EX31_RS06465 at 63.157 kb on + strand, within EX31_RS06465 at 63.158 kb on - strand, within EX31_RS06465 at 63.192 kb on - strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.199 kb on + strand, within EX31_RS06465 at 63.200 kb on - strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.201 kb on + strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.202 kb on - strand, within EX31_RS06465 at 63.468 kb on - strand, within EX31_RS06465 at 63.475 kb on - strand, within EX31_RS06465 at 63.484 kb on - strand, within EX31_RS06465 at 63.498 kb on + strand, within EX31_RS06465 at 63.499 kb on - strand, within EX31_RS06465 at 63.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 60,914 + +0.0 60,915 - +0.8 60,986 - -0.6 60,994 - -0.9 61,160 + EX31_RS06455 0.25 -0.7 61,160 + EX31_RS06455 0.25 -1.5 61,160 + EX31_RS06455 0.25 +0.6 61,160 + EX31_RS06455 0.25 -0.4 61,160 + EX31_RS06455 0.25 +1.4 61,161 - EX31_RS06455 0.25 +0.4 61,161 - EX31_RS06455 0.25 -0.7 61,161 - EX31_RS06455 0.25 -0.2 61,434 + EX31_RS06455 0.55 +0.4 61,561 - EX31_RS06455 0.69 -0.3 61,561 - EX31_RS06455 0.69 -1.4 61,607 - EX31_RS06455 0.74 -0.1 61,607 - EX31_RS06455 0.74 +0.5 61,607 - EX31_RS06455 0.74 -0.0 61,710 + EX31_RS06455 0.85 +0.1 61,711 - EX31_RS06455 0.85 -0.1 61,711 - EX31_RS06455 0.85 +1.1 61,775 - -0.3 61,900 - -0.2 62,036 + EX31_RS06460 0.24 -2.5 62,050 + EX31_RS06460 0.26 +1.4 62,050 + EX31_RS06460 0.26 +0.2 62,178 + EX31_RS06460 0.41 -0.9 62,178 + EX31_RS06460 0.41 -0.4 62,207 + EX31_RS06460 0.45 -0.1 62,208 - EX31_RS06460 0.45 -1.0 62,208 - EX31_RS06460 0.45 -1.7 62,308 + EX31_RS06460 0.57 +0.6 62,308 + EX31_RS06460 0.57 -1.2 62,309 - EX31_RS06460 0.57 +0.1 62,366 + EX31_RS06460 0.64 -0.2 62,367 - EX31_RS06460 0.64 +1.5 62,367 - EX31_RS06460 0.64 +0.4 62,385 - EX31_RS06460 0.67 -1.1 62,408 + EX31_RS06460 0.69 -1.0 62,466 + EX31_RS06460 0.77 -0.7 62,598 + +0.0 62,635 + -0.1 62,824 + EX31_RS06465 0.16 -1.6 62,855 - EX31_RS06465 0.19 +0.2 62,875 - EX31_RS06465 0.21 +0.1 62,901 + EX31_RS06465 0.24 -0.6 62,902 - EX31_RS06465 0.24 +0.7 62,986 + EX31_RS06465 0.33 -0.1 63,084 - EX31_RS06465 0.44 -0.1 63,095 - EX31_RS06465 0.45 -1.5 63,157 + EX31_RS06465 0.52 -0.1 63,158 - EX31_RS06465 0.52 +0.4 63,192 - EX31_RS06465 0.55 -0.5 63,199 + EX31_RS06465 0.56 +0.4 63,199 + EX31_RS06465 0.56 -1.9 63,199 + EX31_RS06465 0.56 -0.0 63,199 + EX31_RS06465 0.56 +1.4 63,199 + EX31_RS06465 0.56 -1.2 63,199 + EX31_RS06465 0.56 -0.6 63,199 + EX31_RS06465 0.56 -0.3 63,199 + EX31_RS06465 0.56 -0.0 63,200 - EX31_RS06465 0.56 -0.0 63,201 + EX31_RS06465 0.56 -1.0 63,201 + EX31_RS06465 0.56 +0.3 63,201 + EX31_RS06465 0.56 +0.4 63,201 + EX31_RS06465 0.56 -1.0 63,201 + EX31_RS06465 0.56 +0.8 63,201 + EX31_RS06465 0.56 -2.8 63,202 - EX31_RS06465 0.56 -2.5 63,202 - EX31_RS06465 0.56 +1.1 63,202 - EX31_RS06465 0.56 +0.4 63,202 - EX31_RS06465 0.56 -0.3 63,202 - EX31_RS06465 0.56 +0.8 63,468 - EX31_RS06465 0.85 -0.4 63,475 - EX31_RS06465 0.86 -0.3 63,484 - EX31_RS06465 0.87 +0.9 63,498 + EX31_RS06465 0.88 +0.1 63,499 - EX31_RS06465 0.88 -1.7 63,634 - -0.6
Or see this region's nucleotide sequence