Strain Fitness in Rahnella sp. WP5 around EX31_RS06450

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06445 and EX31_RS06450 are separated by 65 nucleotidesEX31_RS06450 and EX31_RS06455 are separated by 16 nucleotidesEX31_RS06455 and EX31_RS06460 overlap by 4 nucleotides EX31_RS06445: EX31_RS06445 - ABC transporter ATP-binding protein, at 58,467 to 59,570 _RS06445 EX31_RS06450: EX31_RS06450 - ABC transporter substrate-binding protein, at 59,636 to 60,916 _RS06450 EX31_RS06455: EX31_RS06455 - sugar ABC transporter permease, at 60,933 to 61,844 _RS06455 EX31_RS06460: EX31_RS06460 - carbohydrate ABC transporter permease, at 61,841 to 62,656 _RS06460 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2at 58.641 kb on - strand, within EX31_RS06445at 58.647 kb on + strand, within EX31_RS06445at 58.691 kb on + strand, within EX31_RS06445at 58.692 kb on - strand, within EX31_RS06445at 59.027 kb on - strand, within EX31_RS06445at 59.027 kb on - strand, within EX31_RS06445at 59.031 kb on + strand, within EX31_RS06445at 59.031 kb on + strand, within EX31_RS06445at 59.031 kb on + strand, within EX31_RS06445at 59.031 kb on + strand, within EX31_RS06445at 59.031 kb on + strand, within EX31_RS06445at 59.031 kb on + strand, within EX31_RS06445at 59.031 kb on + strand, within EX31_RS06445at 59.032 kb on - strand, within EX31_RS06445at 59.032 kb on - strand, within EX31_RS06445at 59.032 kb on - strand, within EX31_RS06445at 59.032 kb on - strand, within EX31_RS06445at 59.130 kb on + strand, within EX31_RS06445at 59.130 kb on + strand, within EX31_RS06445at 59.130 kb on + strand, within EX31_RS06445at 59.131 kb on - strand, within EX31_RS06445at 59.132 kb on + strand, within EX31_RS06445at 59.132 kb on + strand, within EX31_RS06445at 59.132 kb on + strand, within EX31_RS06445at 59.132 kb on + strand, within EX31_RS06445at 59.133 kb on - strand, within EX31_RS06445at 59.133 kb on - strand, within EX31_RS06445at 59.133 kb on - strand, within EX31_RS06445at 59.221 kb on - strand, within EX31_RS06445at 59.221 kb on - strand, within EX31_RS06445at 59.221 kb on - strand, within EX31_RS06445at 59.221 kb on - strand, within EX31_RS06445at 59.221 kb on - strand, within EX31_RS06445at 59.232 kb on - strand, within EX31_RS06445at 59.297 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.355 kb on + strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.356 kb on - strand, within EX31_RS06445at 59.407 kb on + strand, within EX31_RS06445at 59.407 kb on + strand, within EX31_RS06445at 59.408 kb on - strand, within EX31_RS06445at 59.408 kb on - strand, within EX31_RS06445at 59.498 kb on + strandat 59.499 kb on - strandat 59.568 kb on + strandat 59.568 kb on + strandat 59.568 kb on + strandat 59.568 kb on + strandat 59.568 kb on + strandat 59.569 kb on - strandat 59.569 kb on - strandat 59.569 kb on - strandat 59.569 kb on - strandat 59.598 kb on + strandat 59.599 kb on - strandat 59.608 kb on + strandat 59.608 kb on + strandat 59.609 kb on - strandat 59.609 kb on - strandat 59.636 kb on - strandat 59.724 kb on + strandat 59.732 kb on + strandat 59.732 kb on + strandat 59.733 kb on - strandat 59.733 kb on - strandat 59.733 kb on - strandat 59.733 kb on - strandat 59.768 kb on - strand, within EX31_RS06450at 59.768 kb on - strand, within EX31_RS06450at 59.768 kb on - strand, within EX31_RS06450at 59.776 kb on + strand, within EX31_RS06450at 59.812 kb on + strand, within EX31_RS06450at 59.831 kb on + strand, within EX31_RS06450at 59.843 kb on + strand, within EX31_RS06450at 60.084 kb on - strand, within EX31_RS06450at 60.084 kb on - strand, within EX31_RS06450at 60.713 kb on + strand, within EX31_RS06450at 60.713 kb on + strand, within EX31_RS06450at 60.714 kb on - strand, within EX31_RS06450at 60.761 kb on + strand, within EX31_RS06450at 60.785 kb on + strand, within EX31_RS06450at 60.785 kb on + strand, within EX31_RS06450at 60.786 kb on - strand, within EX31_RS06450at 60.786 kb on - strand, within EX31_RS06450at 60.914 kb on + strandat 60.915 kb on - strandat 60.986 kb on - strandat 60.994 kb on - strandat 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.160 kb on + strand, within EX31_RS06455at 61.161 kb on - strand, within EX31_RS06455at 61.161 kb on - strand, within EX31_RS06455at 61.161 kb on - strand, within EX31_RS06455at 61.434 kb on + strand, within EX31_RS06455at 61.561 kb on - strand, within EX31_RS06455at 61.561 kb on - strand, within EX31_RS06455at 61.607 kb on - strand, within EX31_RS06455at 61.607 kb on - strand, within EX31_RS06455at 61.607 kb on - strand, within EX31_RS06455at 61.710 kb on + strand, within EX31_RS06455at 61.711 kb on - strand, within EX31_RS06455at 61.711 kb on - strand, within EX31_RS06455at 61.775 kb on - strandat 61.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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58,641 - EX31_RS06445 0.16 +0.1
58,647 + EX31_RS06445 0.16 -0.5
58,691 + EX31_RS06445 0.20 +0.0
58,692 - EX31_RS06445 0.20 +0.1
59,027 - EX31_RS06445 0.51 +0.6
59,027 - EX31_RS06445 0.51 +0.5
59,031 + EX31_RS06445 0.51 +0.0
59,031 + EX31_RS06445 0.51 -0.4
59,031 + EX31_RS06445 0.51 +0.9
59,031 + EX31_RS06445 0.51 -1.3
59,031 + EX31_RS06445 0.51 +1.3
59,031 + EX31_RS06445 0.51 +0.2
59,031 + EX31_RS06445 0.51 -0.4
59,032 - EX31_RS06445 0.51 -1.0
59,032 - EX31_RS06445 0.51 -0.0
59,032 - EX31_RS06445 0.51 -0.9
59,032 - EX31_RS06445 0.51 +0.7
59,130 + EX31_RS06445 0.60 -0.2
59,130 + EX31_RS06445 0.60 +1.8
59,130 + EX31_RS06445 0.60 +0.2
59,131 - EX31_RS06445 0.60 +1.0
59,132 + EX31_RS06445 0.60 -0.4
59,132 + EX31_RS06445 0.60 -2.6
59,132 + EX31_RS06445 0.60 +0.2
59,132 + EX31_RS06445 0.60 -0.1
59,133 - EX31_RS06445 0.60 -0.3
59,133 - EX31_RS06445 0.60 -0.1
59,133 - EX31_RS06445 0.60 -1.4
59,221 - EX31_RS06445 0.68 -0.1
59,221 - EX31_RS06445 0.68 +0.8
59,221 - EX31_RS06445 0.68 +0.6
59,221 - EX31_RS06445 0.68 +1.1
59,221 - EX31_RS06445 0.68 +0.3
59,232 - EX31_RS06445 0.69 -1.7
59,297 + EX31_RS06445 0.75 +0.2
59,355 + EX31_RS06445 0.80 +0.2
59,355 + EX31_RS06445 0.80 -1.2
59,355 + EX31_RS06445 0.80 -1.6
59,355 + EX31_RS06445 0.80 +1.4
59,355 + EX31_RS06445 0.80 -1.3
59,355 + EX31_RS06445 0.80 +1.3
59,355 + EX31_RS06445 0.80 +0.9
59,355 + EX31_RS06445 0.80 -0.7
59,355 + EX31_RS06445 0.80 +0.1
59,355 + EX31_RS06445 0.80 +0.8
59,356 - EX31_RS06445 0.81 -1.1
59,356 - EX31_RS06445 0.81 +0.8
59,356 - EX31_RS06445 0.81 -0.8
59,356 - EX31_RS06445 0.81 -0.1
59,356 - EX31_RS06445 0.81 -0.3
59,356 - EX31_RS06445 0.81 -1.5
59,356 - EX31_RS06445 0.81 +0.0
59,356 - EX31_RS06445 0.81 +0.9
59,407 + EX31_RS06445 0.85 -0.4
59,407 + EX31_RS06445 0.85 -0.9
59,408 - EX31_RS06445 0.85 -0.0
59,408 - EX31_RS06445 0.85 +0.3
59,498 + +0.7
59,499 - -0.3
59,568 + -0.3
59,568 + -0.6
59,568 + -1.5
59,568 + +0.5
59,568 + -0.1
59,569 - +0.4
59,569 - -0.5
59,569 - +1.0
59,569 - +0.6
59,598 + -0.3
59,599 - +1.1
59,608 + -0.7
59,608 + +0.0
59,609 - +0.1
59,609 - -1.0
59,636 - +0.4
59,724 + +0.5
59,732 + -1.0
59,732 + +0.1
59,733 - -0.9
59,733 - +0.9
59,733 - +0.5
59,733 - +0.1
59,768 - EX31_RS06450 0.10 +0.0
59,768 - EX31_RS06450 0.10 -1.3
59,768 - EX31_RS06450 0.10 -0.9
59,776 + EX31_RS06450 0.11 -0.2
59,812 + EX31_RS06450 0.14 +0.0
59,831 + EX31_RS06450 0.15 -0.6
59,843 + EX31_RS06450 0.16 -0.0
60,084 - EX31_RS06450 0.35 -0.0
60,084 - EX31_RS06450 0.35 -0.1
60,713 + EX31_RS06450 0.84 -0.5
60,713 + EX31_RS06450 0.84 +0.4
60,714 - EX31_RS06450 0.84 -0.1
60,761 + EX31_RS06450 0.88 -0.7
60,785 + EX31_RS06450 0.90 +0.5
60,785 + EX31_RS06450 0.90 -1.3
60,786 - EX31_RS06450 0.90 -0.6
60,786 - EX31_RS06450 0.90 -0.7
60,914 + +0.0
60,915 - +0.8
60,986 - -0.6
60,994 - -0.9
61,160 + EX31_RS06455 0.25 -0.7
61,160 + EX31_RS06455 0.25 -1.5
61,160 + EX31_RS06455 0.25 +0.6
61,160 + EX31_RS06455 0.25 -0.4
61,160 + EX31_RS06455 0.25 +1.4
61,161 - EX31_RS06455 0.25 +0.4
61,161 - EX31_RS06455 0.25 -0.7
61,161 - EX31_RS06455 0.25 -0.2
61,434 + EX31_RS06455 0.55 +0.4
61,561 - EX31_RS06455 0.69 -0.3
61,561 - EX31_RS06455 0.69 -1.4
61,607 - EX31_RS06455 0.74 -0.1
61,607 - EX31_RS06455 0.74 +0.5
61,607 - EX31_RS06455 0.74 -0.0
61,710 + EX31_RS06455 0.85 +0.1
61,711 - EX31_RS06455 0.85 -0.1
61,711 - EX31_RS06455 0.85 +1.1
61,775 - -0.3
61,900 - -0.2

Or see this region's nucleotide sequence