Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS04515 and EX31_RS04520 overlap by 4 nucleotides EX31_RS04520 and EX31_RS04525 are separated by 31 nucleotides EX31_RS04525 and EX31_RS04530 are separated by 9 nucleotides
EX31_RS04515: EX31_RS04515 - hydrolase, at 13,511 to 14,506
_RS04515
EX31_RS04520: EX31_RS04520 - YheU family protein, at 14,503 to 14,748
_RS04520
EX31_RS04525: EX31_RS04525 - carbamate kinase, at 14,780 to 15,679
_RS04525
EX31_RS04530: EX31_RS04530 - DUF2877 domain-containing protein, at 15,689 to 16,450
_RS04530
Position (kb) 14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.510 kb on + strand at 13.510 kb on + strand at 13.510 kb on + strand at 13.510 kb on + strand at 13.510 kb on + strand at 13.510 kb on + strand at 13.510 kb on + strand at 13.510 kb on + strand at 13.511 kb on - strand at 13.511 kb on - strand at 13.569 kb on + strand at 13.650 kb on + strand, within EX31_RS04515 at 13.651 kb on - strand, within EX31_RS04515 at 13.651 kb on - strand, within EX31_RS04515 at 13.684 kb on + strand, within EX31_RS04515 at 13.684 kb on + strand, within EX31_RS04515 at 13.684 kb on + strand, within EX31_RS04515 at 13.684 kb on + strand, within EX31_RS04515 at 13.684 kb on + strand, within EX31_RS04515 at 13.684 kb on + strand, within EX31_RS04515 at 13.685 kb on - strand, within EX31_RS04515 at 13.685 kb on - strand, within EX31_RS04515 at 13.685 kb on - strand, within EX31_RS04515 at 13.685 kb on - strand, within EX31_RS04515 at 13.736 kb on + strand, within EX31_RS04515 at 13.736 kb on + strand, within EX31_RS04515 at 13.736 kb on + strand, within EX31_RS04515 at 13.749 kb on + strand, within EX31_RS04515 at 13.749 kb on + strand, within EX31_RS04515 at 13.749 kb on + strand, within EX31_RS04515 at 13.750 kb on - strand, within EX31_RS04515 at 13.750 kb on - strand, within EX31_RS04515 at 13.750 kb on - strand, within EX31_RS04515 at 13.750 kb on - strand, within EX31_RS04515 at 13.750 kb on - strand, within EX31_RS04515 at 13.823 kb on - strand, within EX31_RS04515 at 13.830 kb on + strand, within EX31_RS04515 at 13.830 kb on + strand, within EX31_RS04515 at 13.830 kb on + strand, within EX31_RS04515 at 13.831 kb on - strand, within EX31_RS04515 at 13.831 kb on - strand, within EX31_RS04515 at 13.831 kb on - strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.834 kb on + strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.835 kb on - strand, within EX31_RS04515 at 13.838 kb on + strand, within EX31_RS04515 at 13.838 kb on + strand, within EX31_RS04515 at 13.838 kb on + strand, within EX31_RS04515 at 13.838 kb on + strand, within EX31_RS04515 at 13.839 kb on - strand, within EX31_RS04515 at 13.839 kb on - strand, within EX31_RS04515 at 13.895 kb on + strand, within EX31_RS04515 at 13.895 kb on + strand, within EX31_RS04515 at 13.895 kb on + strand, within EX31_RS04515 at 13.895 kb on + strand, within EX31_RS04515 at 13.942 kb on + strand, within EX31_RS04515 at 13.942 kb on + strand, within EX31_RS04515 at 13.942 kb on + strand, within EX31_RS04515 at 13.942 kb on + strand, within EX31_RS04515 at 13.942 kb on + strand, within EX31_RS04515 at 13.956 kb on - strand, within EX31_RS04515 at 13.956 kb on - strand, within EX31_RS04515 at 13.982 kb on - strand, within EX31_RS04515 at 13.982 kb on - strand, within EX31_RS04515 at 14.066 kb on + strand, within EX31_RS04515 at 14.066 kb on + strand, within EX31_RS04515 at 14.067 kb on - strand, within EX31_RS04515 at 14.075 kb on + strand, within EX31_RS04515 at 14.076 kb on - strand, within EX31_RS04515 at 14.157 kb on + strand, within EX31_RS04515 at 14.157 kb on + strand, within EX31_RS04515 at 14.157 kb on + strand, within EX31_RS04515 at 14.157 kb on + strand, within EX31_RS04515 at 14.158 kb on - strand, within EX31_RS04515 at 14.158 kb on - strand, within EX31_RS04515 at 14.171 kb on + strand, within EX31_RS04515 at 14.171 kb on + strand, within EX31_RS04515 at 14.172 kb on - strand, within EX31_RS04515 at 14.172 kb on - strand, within EX31_RS04515 at 14.234 kb on + strand, within EX31_RS04515 at 14.237 kb on + strand, within EX31_RS04515 at 14.293 kb on + strand, within EX31_RS04515 at 14.317 kb on + strand, within EX31_RS04515 at 14.317 kb on + strand, within EX31_RS04515 at 14.318 kb on - strand, within EX31_RS04515 at 14.370 kb on - strand, within EX31_RS04515 at 14.377 kb on - strand, within EX31_RS04515 at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.418 kb on + strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.419 kb on - strand at 14.475 kb on + strand at 14.475 kb on + strand at 14.476 kb on - strand at 14.482 kb on + strand at 14.482 kb on + strand at 14.482 kb on + strand at 14.482 kb on + strand at 14.482 kb on + strand at 14.482 kb on + strand at 14.483 kb on - strand at 14.483 kb on - strand at 14.488 kb on + strand at 14.488 kb on + strand at 14.488 kb on + strand at 14.488 kb on + strand at 14.489 kb on - strand at 14.508 kb on + strand at 14.508 kb on + strand at 14.509 kb on - strand at 14.564 kb on + strand, within EX31_RS04520 at 14.565 kb on - strand, within EX31_RS04520 at 14.694 kb on + strand, within EX31_RS04520 at 14.694 kb on + strand, within EX31_RS04520 at 14.695 kb on - strand, within EX31_RS04520 at 14.695 kb on - strand, within EX31_RS04520 at 14.695 kb on - strand, within EX31_RS04520 at 14.695 kb on - strand, within EX31_RS04520 at 14.695 kb on - strand, within EX31_RS04520 at 14.747 kb on - strand at 14.781 kb on + strand at 14.797 kb on + strand at 14.798 kb on - strand at 14.852 kb on - strand at 14.852 kb on - strand at 14.853 kb on + strand at 14.853 kb on + strand at 14.853 kb on + strand at 14.853 kb on + strand at 14.853 kb on + strand at 14.854 kb on - strand at 14.854 kb on - strand at 14.854 kb on - strand at 14.854 kb on - strand at 14.854 kb on - strand at 14.854 kb on - strand at 14.854 kb on - strand at 14.854 kb on - strand at 14.871 kb on + strand, within EX31_RS04525 at 14.872 kb on - strand, within EX31_RS04525 at 14.872 kb on - strand, within EX31_RS04525 at 14.997 kb on + strand, within EX31_RS04525 at 14.998 kb on - strand, within EX31_RS04525 at 14.998 kb on - strand, within EX31_RS04525 at 15.176 kb on - strand, within EX31_RS04525 at 15.200 kb on - strand, within EX31_RS04525 at 15.231 kb on + strand, within EX31_RS04525 at 15.231 kb on + strand, within EX31_RS04525 at 15.231 kb on + strand, within EX31_RS04525 at 15.232 kb on - strand, within EX31_RS04525 at 15.232 kb on - strand, within EX31_RS04525 at 15.232 kb on - strand, within EX31_RS04525 at 15.297 kb on + strand, within EX31_RS04525 at 15.298 kb on - strand, within EX31_RS04525 at 15.389 kb on - strand, within EX31_RS04525 at 15.421 kb on + strand, within EX31_RS04525 at 15.422 kb on - strand, within EX31_RS04525 at 15.422 kb on - strand, within EX31_RS04525 at 15.484 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.486 kb on + strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.487 kb on - strand, within EX31_RS04525 at 15.500 kb on + strand, within EX31_RS04525 at 15.500 kb on + strand, within EX31_RS04525 at 15.501 kb on - strand, within EX31_RS04525 at 15.638 kb on + strand at 15.638 kb on + strand at 15.638 kb on + strand at 15.639 kb on - strand at 15.639 kb on - strand at 15.649 kb on + strand at 15.669 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 13,510 + -0.5 13,510 + -0.0 13,510 + +0.3 13,510 + -0.8 13,510 + +0.4 13,510 + +0.6 13,510 + -0.7 13,510 + -0.4 13,511 - -0.2 13,511 - -0.0 13,569 + +0.3 13,650 + EX31_RS04515 0.14 +0.2 13,651 - EX31_RS04515 0.14 +0.0 13,651 - EX31_RS04515 0.14 +0.0 13,684 + EX31_RS04515 0.17 -1.2 13,684 + EX31_RS04515 0.17 -0.7 13,684 + EX31_RS04515 0.17 +1.3 13,684 + EX31_RS04515 0.17 +0.1 13,684 + EX31_RS04515 0.17 -0.7 13,684 + EX31_RS04515 0.17 +0.3 13,685 - EX31_RS04515 0.17 +0.4 13,685 - EX31_RS04515 0.17 -1.0 13,685 - EX31_RS04515 0.17 +0.4 13,685 - EX31_RS04515 0.17 +0.1 13,736 + EX31_RS04515 0.23 -0.8 13,736 + EX31_RS04515 0.23 -0.1 13,736 + EX31_RS04515 0.23 -0.5 13,749 + EX31_RS04515 0.24 +0.1 13,749 + EX31_RS04515 0.24 -0.5 13,749 + EX31_RS04515 0.24 -0.3 13,750 - EX31_RS04515 0.24 -0.2 13,750 - EX31_RS04515 0.24 +0.0 13,750 - EX31_RS04515 0.24 +0.3 13,750 - EX31_RS04515 0.24 +0.2 13,750 - EX31_RS04515 0.24 +0.0 13,823 - EX31_RS04515 0.31 -0.4 13,830 + EX31_RS04515 0.32 +0.4 13,830 + EX31_RS04515 0.32 +0.7 13,830 + EX31_RS04515 0.32 +0.7 13,831 - EX31_RS04515 0.32 -0.2 13,831 - EX31_RS04515 0.32 +0.1 13,831 - EX31_RS04515 0.32 +0.2 13,834 + EX31_RS04515 0.32 +0.2 13,834 + EX31_RS04515 0.32 -0.1 13,834 + EX31_RS04515 0.32 +0.6 13,834 + EX31_RS04515 0.32 -1.1 13,834 + EX31_RS04515 0.32 -0.6 13,834 + EX31_RS04515 0.32 +0.7 13,834 + EX31_RS04515 0.32 -0.5 13,834 + EX31_RS04515 0.32 -1.5 13,834 + EX31_RS04515 0.32 -0.9 13,834 + EX31_RS04515 0.32 -0.7 13,834 + EX31_RS04515 0.32 +0.5 13,834 + EX31_RS04515 0.32 +0.1 13,834 + EX31_RS04515 0.32 -0.4 13,834 + EX31_RS04515 0.32 +0.3 13,834 + EX31_RS04515 0.32 -0.2 13,834 + EX31_RS04515 0.32 -0.3 13,834 + EX31_RS04515 0.32 +0.1 13,834 + EX31_RS04515 0.32 -0.6 13,834 + EX31_RS04515 0.32 +0.2 13,834 + EX31_RS04515 0.32 +0.4 13,834 + EX31_RS04515 0.32 -0.6 13,835 - EX31_RS04515 0.33 +0.1 13,835 - EX31_RS04515 0.33 +0.4 13,835 - EX31_RS04515 0.33 -1.3 13,835 - EX31_RS04515 0.33 +0.3 13,835 - EX31_RS04515 0.33 +0.1 13,835 - EX31_RS04515 0.33 +0.4 13,835 - EX31_RS04515 0.33 -0.0 13,835 - EX31_RS04515 0.33 +0.9 13,835 - EX31_RS04515 0.33 -0.1 13,835 - EX31_RS04515 0.33 +0.4 13,835 - EX31_RS04515 0.33 -0.8 13,835 - EX31_RS04515 0.33 +0.5 13,835 - EX31_RS04515 0.33 +0.7 13,835 - EX31_RS04515 0.33 -0.0 13,838 + EX31_RS04515 0.33 -0.1 13,838 + EX31_RS04515 0.33 -0.6 13,838 + EX31_RS04515 0.33 -1.1 13,838 + EX31_RS04515 0.33 +0.2 13,839 - EX31_RS04515 0.33 -0.7 13,839 - EX31_RS04515 0.33 +0.4 13,895 + EX31_RS04515 0.39 +0.3 13,895 + EX31_RS04515 0.39 +0.7 13,895 + EX31_RS04515 0.39 -0.0 13,895 + EX31_RS04515 0.39 +0.5 13,942 + EX31_RS04515 0.43 -0.4 13,942 + EX31_RS04515 0.43 -0.5 13,942 + EX31_RS04515 0.43 +0.2 13,942 + EX31_RS04515 0.43 +0.3 13,942 + EX31_RS04515 0.43 -0.0 13,956 - EX31_RS04515 0.45 -1.7 13,956 - EX31_RS04515 0.45 -0.6 13,982 - EX31_RS04515 0.47 -0.3 13,982 - EX31_RS04515 0.47 -1.3 14,066 + EX31_RS04515 0.56 +0.6 14,066 + EX31_RS04515 0.56 +0.1 14,067 - EX31_RS04515 0.56 -0.3 14,075 + EX31_RS04515 0.57 +1.2 14,076 - EX31_RS04515 0.57 -0.2 14,157 + EX31_RS04515 0.65 -0.0 14,157 + EX31_RS04515 0.65 +0.4 14,157 + EX31_RS04515 0.65 +0.9 14,157 + EX31_RS04515 0.65 -0.1 14,158 - EX31_RS04515 0.65 +1.5 14,158 - EX31_RS04515 0.65 +0.9 14,171 + EX31_RS04515 0.66 -1.0 14,171 + EX31_RS04515 0.66 -2.2 14,172 - EX31_RS04515 0.66 +0.0 14,172 - EX31_RS04515 0.66 +0.3 14,234 + EX31_RS04515 0.73 +0.9 14,237 + EX31_RS04515 0.73 -0.5 14,293 + EX31_RS04515 0.79 +0.6 14,317 + EX31_RS04515 0.81 +0.1 14,317 + EX31_RS04515 0.81 +0.2 14,318 - EX31_RS04515 0.81 +0.2 14,370 - EX31_RS04515 0.86 +0.4 14,377 - EX31_RS04515 0.87 -0.2 14,418 + +0.1 14,418 + +0.4 14,418 + -0.7 14,418 + -0.1 14,418 + +0.2 14,418 + -0.2 14,418 + +0.2 14,418 + -0.9 14,418 + -1.3 14,418 + +0.3 14,418 + +0.3 14,418 + +0.0 14,418 + +0.4 14,419 - +0.2 14,419 - -0.1 14,419 - -0.4 14,419 - +0.5 14,419 - -0.2 14,419 - +0.8 14,419 - -0.2 14,419 - +0.1 14,419 - +0.2 14,419 - -0.9 14,475 + -0.1 14,475 + -0.4 14,476 - -0.2 14,482 + +0.1 14,482 + +0.2 14,482 + -0.1 14,482 + +0.2 14,482 + -0.2 14,482 + -0.9 14,483 - -0.1 14,483 - +0.2 14,488 + -0.1 14,488 + +0.2 14,488 + +1.2 14,488 + +0.5 14,489 - -0.1 14,508 + +0.4 14,508 + -0.5 14,509 - +0.6 14,564 + EX31_RS04520 0.25 -0.9 14,565 - EX31_RS04520 0.25 -1.8 14,694 + EX31_RS04520 0.78 +0.2 14,694 + EX31_RS04520 0.78 -0.1 14,695 - EX31_RS04520 0.78 -0.4 14,695 - EX31_RS04520 0.78 -0.6 14,695 - EX31_RS04520 0.78 -0.3 14,695 - EX31_RS04520 0.78 -0.4 14,695 - EX31_RS04520 0.78 -0.4 14,747 - -0.0 14,781 + +0.1 14,797 + +1.0 14,798 - -0.2 14,852 - +0.2 14,852 - -0.1 14,853 + -0.3 14,853 + -1.1 14,853 + -0.2 14,853 + -1.0 14,853 + -1.3 14,854 - +0.8 14,854 - +0.3 14,854 - +0.5 14,854 - -0.4 14,854 - +0.2 14,854 - -0.5 14,854 - -0.4 14,854 - +0.0 14,871 + EX31_RS04525 0.10 +0.3 14,872 - EX31_RS04525 0.10 +0.0 14,872 - EX31_RS04525 0.10 +0.8 14,997 + EX31_RS04525 0.24 -1.4 14,998 - EX31_RS04525 0.24 -0.3 14,998 - EX31_RS04525 0.24 +0.0 15,176 - EX31_RS04525 0.44 -0.3 15,200 - EX31_RS04525 0.47 +0.2 15,231 + EX31_RS04525 0.50 +0.4 15,231 + EX31_RS04525 0.50 +0.4 15,231 + EX31_RS04525 0.50 -0.5 15,232 - EX31_RS04525 0.50 +0.4 15,232 - EX31_RS04525 0.50 +0.0 15,232 - EX31_RS04525 0.50 -0.2 15,297 + EX31_RS04525 0.57 +0.9 15,298 - EX31_RS04525 0.58 -0.4 15,389 - EX31_RS04525 0.68 +0.4 15,421 + EX31_RS04525 0.71 -0.7 15,422 - EX31_RS04525 0.71 -0.6 15,422 - EX31_RS04525 0.71 +0.3 15,484 + EX31_RS04525 0.78 +0.2 15,486 + EX31_RS04525 0.78 -0.4 15,486 + EX31_RS04525 0.78 -0.1 15,486 + EX31_RS04525 0.78 -0.1 15,486 + EX31_RS04525 0.78 -0.7 15,487 - EX31_RS04525 0.79 +1.6 15,487 - EX31_RS04525 0.79 -0.2 15,487 - EX31_RS04525 0.79 +0.2 15,487 - EX31_RS04525 0.79 +0.4 15,487 - EX31_RS04525 0.79 -0.7 15,487 - EX31_RS04525 0.79 -0.5 15,500 + EX31_RS04525 0.80 -0.4 15,500 + EX31_RS04525 0.80 +0.3 15,501 - EX31_RS04525 0.80 +0.2 15,638 + -1.1 15,638 + -1.9 15,638 + -0.4 15,639 - +0.4 15,639 - +0.3 15,649 + +0.1 15,669 - +0.3
Or see this region's nucleotide sequence