Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS25135 and EX31_RS04285 are separated by 49 nucleotides EX31_RS04285 and EX31_RS04290 overlap by 8 nucleotides
EX31_RS25135: EX31_RS25135 - hypothetical protein, at 385,023 to 385,694
_RS25135
EX31_RS04285: EX31_RS04285 - hypothetical protein, at 385,744 to 386,856
_RS04285
EX31_RS04290: EX31_RS04290 - N-6 DNA methylase, at 386,849 to 388,909
_RS04290
Position (kb) 385
386
387 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 384.811 kb on - strand at 384.933 kb on + strand at 385.046 kb on + strand at 385.046 kb on + strand at 385.090 kb on + strand at 385.091 kb on - strand, within EX31_RS25135 at 385.119 kb on - strand, within EX31_RS25135 at 385.204 kb on - strand, within EX31_RS25135 at 385.267 kb on - strand, within EX31_RS25135 at 385.332 kb on + strand, within EX31_RS25135 at 385.501 kb on - strand, within EX31_RS25135 at 385.531 kb on - strand, within EX31_RS25135 at 385.558 kb on + strand, within EX31_RS25135 at 385.687 kb on - strand at 385.835 kb on - strand at 385.967 kb on - strand, within EX31_RS04285 at 386.062 kb on - strand, within EX31_RS04285 at 386.080 kb on - strand, within EX31_RS04285 at 386.080 kb on - strand, within EX31_RS04285 at 386.127 kb on + strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.128 kb on - strand, within EX31_RS04285 at 386.142 kb on - strand, within EX31_RS04285 at 386.241 kb on + strand, within EX31_RS04285 at 386.284 kb on - strand, within EX31_RS04285 at 386.286 kb on - strand, within EX31_RS04285 at 386.347 kb on - strand, within EX31_RS04285 at 386.365 kb on - strand, within EX31_RS04285 at 386.365 kb on - strand, within EX31_RS04285 at 386.699 kb on + strand, within EX31_RS04285 at 386.925 kb on - strand at 386.960 kb on - strand at 386.987 kb on - strand at 387.056 kb on - strand, within EX31_RS04290 at 387.122 kb on + strand, within EX31_RS04290 at 387.219 kb on - strand, within EX31_RS04290 at 387.250 kb on - strand, within EX31_RS04290 at 387.294 kb on - strand, within EX31_RS04290 at 387.324 kb on - strand, within EX31_RS04290 at 387.327 kb on + strand, within EX31_RS04290 at 387.338 kb on - strand, within EX31_RS04290 at 387.369 kb on - strand, within EX31_RS04290 at 387.374 kb on + strand, within EX31_RS04290 at 387.375 kb on - strand, within EX31_RS04290 at 387.434 kb on - strand, within EX31_RS04290 at 387.434 kb on - strand, within EX31_RS04290 at 387.451 kb on + strand, within EX31_RS04290 at 387.452 kb on - strand, within EX31_RS04290 at 387.452 kb on - strand, within EX31_RS04290 at 387.454 kb on - strand, within EX31_RS04290 at 387.456 kb on + strand, within EX31_RS04290 at 387.457 kb on - strand, within EX31_RS04290 at 387.479 kb on + strand, within EX31_RS04290 at 387.480 kb on - strand, within EX31_RS04290 at 387.480 kb on - strand, within EX31_RS04290 at 387.481 kb on + strand, within EX31_RS04290 at 387.482 kb on - strand, within EX31_RS04290 at 387.482 kb on - strand, within EX31_RS04290 at 387.497 kb on - strand, within EX31_RS04290 at 387.511 kb on + strand, within EX31_RS04290 at 387.512 kb on - strand, within EX31_RS04290 at 387.544 kb on - strand, within EX31_RS04290 at 387.641 kb on - strand, within EX31_RS04290 at 387.662 kb on + strand, within EX31_RS04290 at 387.663 kb on - strand, within EX31_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 384,811 - +0.4 384,933 + -0.6 385,046 + +0.5 385,046 + -0.1 385,090 + +0.5 385,091 - EX31_RS25135 0.10 -0.5 385,119 - EX31_RS25135 0.14 +0.8 385,204 - EX31_RS25135 0.27 +0.0 385,267 - EX31_RS25135 0.36 +0.6 385,332 + EX31_RS25135 0.46 +0.6 385,501 - EX31_RS25135 0.71 +1.3 385,531 - EX31_RS25135 0.76 +1.3 385,558 + EX31_RS25135 0.80 +0.9 385,687 - -1.0 385,835 - -0.2 385,967 - EX31_RS04285 0.20 -0.3 386,062 - EX31_RS04285 0.29 -0.0 386,080 - EX31_RS04285 0.30 -0.6 386,080 - EX31_RS04285 0.30 -0.6 386,127 + EX31_RS04285 0.34 -0.1 386,128 - EX31_RS04285 0.35 -2.4 386,128 - EX31_RS04285 0.35 -0.7 386,128 - EX31_RS04285 0.35 -3.2 386,128 - EX31_RS04285 0.35 +0.3 386,142 - EX31_RS04285 0.36 -0.3 386,241 + EX31_RS04285 0.45 -1.2 386,284 - EX31_RS04285 0.49 +0.1 386,286 - EX31_RS04285 0.49 -0.5 386,347 - EX31_RS04285 0.54 -0.1 386,365 - EX31_RS04285 0.56 +0.6 386,365 - EX31_RS04285 0.56 -1.5 386,699 + EX31_RS04285 0.86 +0.5 386,925 - -0.7 386,960 - +0.5 386,987 - +0.4 387,056 - EX31_RS04290 0.10 -0.5 387,122 + EX31_RS04290 0.13 +1.1 387,219 - EX31_RS04290 0.18 -0.1 387,250 - EX31_RS04290 0.19 +0.7 387,294 - EX31_RS04290 0.22 -1.9 387,324 - EX31_RS04290 0.23 +0.0 387,327 + EX31_RS04290 0.23 -1.3 387,338 - EX31_RS04290 0.24 -1.7 387,369 - EX31_RS04290 0.25 -1.0 387,374 + EX31_RS04290 0.25 +0.1 387,375 - EX31_RS04290 0.26 -1.0 387,434 - EX31_RS04290 0.28 +0.7 387,434 - EX31_RS04290 0.28 -1.6 387,451 + EX31_RS04290 0.29 -0.3 387,452 - EX31_RS04290 0.29 -0.7 387,452 - EX31_RS04290 0.29 +0.3 387,454 - EX31_RS04290 0.29 -0.8 387,456 + EX31_RS04290 0.29 +0.4 387,457 - EX31_RS04290 0.30 +0.5 387,479 + EX31_RS04290 0.31 -0.4 387,480 - EX31_RS04290 0.31 +0.4 387,480 - EX31_RS04290 0.31 +1.0 387,481 + EX31_RS04290 0.31 -0.9 387,482 - EX31_RS04290 0.31 +0.9 387,482 - EX31_RS04290 0.31 -1.0 387,497 - EX31_RS04290 0.31 -0.0 387,511 + EX31_RS04290 0.32 -1.1 387,512 - EX31_RS04290 0.32 -1.9 387,544 - EX31_RS04290 0.34 +0.8 387,641 - EX31_RS04290 0.38 -0.2 387,662 + EX31_RS04290 0.39 -2.3 387,663 - EX31_RS04290 0.39 -1.4
Or see this region's nucleotide sequence