Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02920 and EX31_RS02925 are separated by 80 nucleotides EX31_RS02925 and EX31_RS02930 are separated by 18 nucleotides EX31_RS02930 and EX31_RS02935 are separated by 2 nucleotides
EX31_RS02920: EX31_RS02920 - glycosyltransferase, at 61,839 to 62,996
_RS02920
EX31_RS02925: EX31_RS02925 - polysaccharide biosynthesis tyrosine autokinase, at 63,077 to 65,257
_RS02925
EX31_RS02930: EX31_RS02930 - protein-tyrosine-phosphatase, at 65,276 to 65,710
_RS02930
EX31_RS02935: EX31_RS02935 - polysaccharide export protein, at 65,713 to 66,846
_RS02935
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 62.429 kb on - strand, within EX31_RS02920 at 62.433 kb on - strand, within EX31_RS02920 at 62.433 kb on - strand, within EX31_RS02920 at 62.644 kb on - strand, within EX31_RS02920 at 62.881 kb on - strand at 63.141 kb on + strand at 63.142 kb on - strand at 63.142 kb on - strand at 63.320 kb on - strand, within EX31_RS02925 at 63.367 kb on + strand, within EX31_RS02925 at 63.368 kb on - strand, within EX31_RS02925 at 63.420 kb on - strand, within EX31_RS02925 at 63.485 kb on + strand, within EX31_RS02925 at 63.485 kb on + strand, within EX31_RS02925 at 63.486 kb on - strand, within EX31_RS02925 at 63.486 kb on - strand, within EX31_RS02925 at 63.522 kb on + strand, within EX31_RS02925 at 63.541 kb on + strand, within EX31_RS02925 at 63.542 kb on - strand, within EX31_RS02925 at 63.672 kb on - strand, within EX31_RS02925 at 63.674 kb on - strand, within EX31_RS02925 at 63.676 kb on + strand, within EX31_RS02925 at 63.677 kb on - strand, within EX31_RS02925 at 63.815 kb on + strand, within EX31_RS02925 at 63.972 kb on - strand, within EX31_RS02925 at 64.050 kb on - strand, within EX31_RS02925 at 64.050 kb on - strand, within EX31_RS02925 at 64.094 kb on + strand, within EX31_RS02925 at 64.103 kb on - strand, within EX31_RS02925 at 64.104 kb on + strand, within EX31_RS02925 at 64.104 kb on + strand, within EX31_RS02925 at 64.105 kb on - strand, within EX31_RS02925 at 64.300 kb on + strand, within EX31_RS02925 at 64.310 kb on - strand, within EX31_RS02925 at 64.331 kb on + strand, within EX31_RS02925 at 64.383 kb on + strand, within EX31_RS02925 at 64.430 kb on - strand, within EX31_RS02925 at 64.463 kb on - strand, within EX31_RS02925 at 64.463 kb on - strand, within EX31_RS02925 at 64.516 kb on + strand, within EX31_RS02925 at 64.516 kb on + strand, within EX31_RS02925 at 64.572 kb on - strand, within EX31_RS02925 at 64.601 kb on + strand, within EX31_RS02925 at 64.650 kb on + strand, within EX31_RS02925 at 64.651 kb on - strand, within EX31_RS02925 at 64.651 kb on - strand, within EX31_RS02925 at 64.655 kb on - strand, within EX31_RS02925 at 64.660 kb on + strand, within EX31_RS02925 at 64.660 kb on + strand, within EX31_RS02925 at 64.661 kb on - strand, within EX31_RS02925 at 64.724 kb on + strand, within EX31_RS02925 at 64.725 kb on - strand, within EX31_RS02925 at 64.814 kb on - strand, within EX31_RS02925 at 64.814 kb on - strand, within EX31_RS02925 at 64.836 kb on + strand, within EX31_RS02925 at 64.836 kb on + strand, within EX31_RS02925 at 64.837 kb on - strand, within EX31_RS02925 at 64.980 kb on - strand, within EX31_RS02925 at 64.980 kb on - strand, within EX31_RS02925 at 65.076 kb on - strand at 65.079 kb on - strand at 65.079 kb on - strand at 65.119 kb on - strand at 65.120 kb on + strand at 65.120 kb on + strand at 65.121 kb on - strand at 65.155 kb on + strand at 65.155 kb on + strand at 65.156 kb on - strand at 65.177 kb on + strand at 65.177 kb on + strand at 65.231 kb on - strand at 65.328 kb on + strand, within EX31_RS02930 at 65.335 kb on - strand, within EX31_RS02930 at 65.335 kb on - strand, within EX31_RS02930 at 65.356 kb on + strand, within EX31_RS02930 at 65.443 kb on + strand, within EX31_RS02930 at 65.484 kb on + strand, within EX31_RS02930 at 65.485 kb on - strand, within EX31_RS02930 at 65.521 kb on + strand, within EX31_RS02930 at 65.537 kb on + strand, within EX31_RS02930 at 65.538 kb on - strand, within EX31_RS02930 at 65.538 kb on - strand, within EX31_RS02930 at 65.538 kb on - strand, within EX31_RS02930 at 65.602 kb on + strand, within EX31_RS02930 at 65.672 kb on + strand at 65.672 kb on + strand at 65.673 kb on - strand at 65.673 kb on - strand at 65.673 kb on - strand at 65.674 kb on + strand at 65.674 kb on + strand at 65.674 kb on + strand at 65.674 kb on + strand at 65.674 kb on + strand at 65.674 kb on + strand at 65.675 kb on - strand at 65.675 kb on - strand at 65.675 kb on - strand at 65.675 kb on - strand at 65.675 kb on - strand at 65.683 kb on + strand at 65.687 kb on + strand at 65.687 kb on + strand at 65.687 kb on + strand at 65.687 kb on + strand at 65.687 kb on + strand at 65.687 kb on + strand at 65.687 kb on + strand at 65.687 kb on + strand at 65.688 kb on - strand at 65.688 kb on - strand at 65.688 kb on - strand at 65.688 kb on - strand at 65.688 kb on - strand at 65.710 kb on + strand at 65.710 kb on + strand at 65.710 kb on + strand at 65.711 kb on - strand at 65.711 kb on - strand at 65.714 kb on + strand at 65.714 kb on + strand at 65.714 kb on + strand at 65.715 kb on - strand at 65.715 kb on - strand at 65.715 kb on - strand at 65.731 kb on - strand at 65.732 kb on + strand at 65.732 kb on + strand at 65.733 kb on - strand at 65.752 kb on - strand at 65.752 kb on - strand at 65.752 kb on - strand at 65.754 kb on + strand at 65.754 kb on + strand at 65.754 kb on + strand at 65.755 kb on - strand at 65.755 kb on - strand at 65.758 kb on + strand at 65.759 kb on - strand at 65.828 kb on + strand, within EX31_RS02935 at 65.828 kb on + strand, within EX31_RS02935 at 65.828 kb on + strand, within EX31_RS02935 at 65.829 kb on - strand, within EX31_RS02935 at 65.829 kb on - strand, within EX31_RS02935 at 65.835 kb on + strand, within EX31_RS02935 at 65.841 kb on - strand, within EX31_RS02935 at 65.903 kb on + strand, within EX31_RS02935 at 65.904 kb on - strand, within EX31_RS02935 at 65.904 kb on - strand, within EX31_RS02935 at 65.907 kb on + strand, within EX31_RS02935 at 65.907 kb on + strand, within EX31_RS02935 at 65.908 kb on - strand, within EX31_RS02935 at 65.908 kb on - strand, within EX31_RS02935 at 65.928 kb on + strand, within EX31_RS02935 at 65.929 kb on - strand, within EX31_RS02935 at 65.929 kb on - strand, within EX31_RS02935 at 65.929 kb on - strand, within EX31_RS02935 at 65.929 kb on - strand, within EX31_RS02935 at 65.937 kb on + strand, within EX31_RS02935 at 65.938 kb on - strand, within EX31_RS02935 at 65.938 kb on - strand, within EX31_RS02935 at 65.976 kb on + strand, within EX31_RS02935 at 65.977 kb on - strand, within EX31_RS02935 at 65.977 kb on - strand, within EX31_RS02935 at 66.001 kb on - strand, within EX31_RS02935 at 66.004 kb on + strand, within EX31_RS02935 at 66.004 kb on + strand, within EX31_RS02935 at 66.004 kb on + strand, within EX31_RS02935 at 66.004 kb on + strand, within EX31_RS02935 at 66.004 kb on + strand, within EX31_RS02935 at 66.004 kb on + strand, within EX31_RS02935 at 66.005 kb on - strand, within EX31_RS02935 at 66.005 kb on - strand, within EX31_RS02935 at 66.079 kb on + strand, within EX31_RS02935 at 66.079 kb on + strand, within EX31_RS02935 at 66.080 kb on - strand, within EX31_RS02935 at 66.096 kb on + strand, within EX31_RS02935 at 66.096 kb on + strand, within EX31_RS02935 at 66.096 kb on + strand, within EX31_RS02935 at 66.097 kb on - strand, within EX31_RS02935 at 66.097 kb on - strand, within EX31_RS02935 at 66.097 kb on - strand, within EX31_RS02935 at 66.103 kb on + strand, within EX31_RS02935 at 66.103 kb on + strand, within EX31_RS02935 at 66.103 kb on + strand, within EX31_RS02935 at 66.103 kb on + strand, within EX31_RS02935 at 66.103 kb on + strand, within EX31_RS02935 at 66.103 kb on + strand, within EX31_RS02935 at 66.104 kb on - strand, within EX31_RS02935 at 66.104 kb on - strand, within EX31_RS02935 at 66.104 kb on - strand, within EX31_RS02935 at 66.108 kb on - strand, within EX31_RS02935 at 66.206 kb on - strand, within EX31_RS02935 at 66.206 kb on - strand, within EX31_RS02935 at 66.208 kb on + strand, within EX31_RS02935 at 66.208 kb on + strand, within EX31_RS02935 at 66.216 kb on + strand, within EX31_RS02935 at 66.216 kb on + strand, within EX31_RS02935 at 66.216 kb on + strand, within EX31_RS02935 at 66.216 kb on + strand, within EX31_RS02935
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 62,429 - EX31_RS02920 0.51 +0.6 62,433 - EX31_RS02920 0.51 +0.6 62,433 - EX31_RS02920 0.51 +0.3 62,644 - EX31_RS02920 0.70 -1.1 62,881 - -0.3 63,141 + -0.9 63,142 - -0.0 63,142 - +2.4 63,320 - EX31_RS02925 0.11 +0.3 63,367 + EX31_RS02925 0.13 +0.8 63,368 - EX31_RS02925 0.13 +0.3 63,420 - EX31_RS02925 0.16 -1.3 63,485 + EX31_RS02925 0.19 -0.8 63,485 + EX31_RS02925 0.19 -0.4 63,486 - EX31_RS02925 0.19 -0.0 63,486 - EX31_RS02925 0.19 -0.1 63,522 + EX31_RS02925 0.20 +0.8 63,541 + EX31_RS02925 0.21 -1.7 63,542 - EX31_RS02925 0.21 -0.7 63,672 - EX31_RS02925 0.27 +1.6 63,674 - EX31_RS02925 0.27 -0.7 63,676 + EX31_RS02925 0.27 -1.1 63,677 - EX31_RS02925 0.28 +0.5 63,815 + EX31_RS02925 0.34 +0.3 63,972 - EX31_RS02925 0.41 -2.9 64,050 - EX31_RS02925 0.45 +0.4 64,050 - EX31_RS02925 0.45 +0.3 64,094 + EX31_RS02925 0.47 +0.5 64,103 - EX31_RS02925 0.47 +0.6 64,104 + EX31_RS02925 0.47 +0.7 64,104 + EX31_RS02925 0.47 +0.9 64,105 - EX31_RS02925 0.47 -0.3 64,300 + EX31_RS02925 0.56 -0.3 64,310 - EX31_RS02925 0.57 +0.7 64,331 + EX31_RS02925 0.57 +0.6 64,383 + EX31_RS02925 0.60 +0.1 64,430 - EX31_RS02925 0.62 +0.2 64,463 - EX31_RS02925 0.64 +0.8 64,463 - EX31_RS02925 0.64 +0.2 64,516 + EX31_RS02925 0.66 -0.5 64,516 + EX31_RS02925 0.66 -0.5 64,572 - EX31_RS02925 0.69 -1.1 64,601 + EX31_RS02925 0.70 +2.7 64,650 + EX31_RS02925 0.72 -0.6 64,651 - EX31_RS02925 0.72 +0.3 64,651 - EX31_RS02925 0.72 +0.2 64,655 - EX31_RS02925 0.72 -1.1 64,660 + EX31_RS02925 0.73 -0.2 64,660 + EX31_RS02925 0.73 -0.1 64,661 - EX31_RS02925 0.73 +0.4 64,724 + EX31_RS02925 0.76 +1.0 64,725 - EX31_RS02925 0.76 +0.7 64,814 - EX31_RS02925 0.80 -0.1 64,814 - EX31_RS02925 0.80 +0.4 64,836 + EX31_RS02925 0.81 +1.2 64,836 + EX31_RS02925 0.81 +1.6 64,837 - EX31_RS02925 0.81 +1.1 64,980 - EX31_RS02925 0.87 +1.2 64,980 - EX31_RS02925 0.87 +0.1 65,076 - -0.4 65,079 - +0.5 65,079 - +0.3 65,119 - -0.9 65,120 + +0.8 65,120 + +0.5 65,121 - -0.1 65,155 + +0.5 65,155 + -0.6 65,156 - +0.4 65,177 + -0.1 65,177 + -0.2 65,231 - -0.5 65,328 + EX31_RS02930 0.12 -0.1 65,335 - EX31_RS02930 0.14 +0.9 65,335 - EX31_RS02930 0.14 +0.0 65,356 + EX31_RS02930 0.18 +0.7 65,443 + EX31_RS02930 0.38 +1.3 65,484 + EX31_RS02930 0.48 +0.7 65,485 - EX31_RS02930 0.48 +0.8 65,521 + EX31_RS02930 0.56 +1.4 65,537 + EX31_RS02930 0.60 +0.7 65,538 - EX31_RS02930 0.60 -0.7 65,538 - EX31_RS02930 0.60 +0.1 65,538 - EX31_RS02930 0.60 -0.1 65,602 + EX31_RS02930 0.75 +0.2 65,672 + +0.4 65,672 + +1.1 65,673 - -0.0 65,673 - +0.0 65,673 - +1.9 65,674 + +0.6 65,674 + +0.6 65,674 + +0.9 65,674 + -0.1 65,674 + +0.2 65,674 + -1.6 65,675 - +1.2 65,675 - +0.6 65,675 - +0.9 65,675 - +0.7 65,675 - +0.1 65,683 + +0.7 65,687 + -1.7 65,687 + +0.1 65,687 + -0.3 65,687 + +0.5 65,687 + +0.6 65,687 + +0.0 65,687 + +0.5 65,687 + -1.1 65,688 - +0.6 65,688 - -0.1 65,688 - +0.1 65,688 - +0.7 65,688 - -2.3 65,710 + -0.9 65,710 + -0.1 65,710 + +0.0 65,711 - +0.4 65,711 - -1.0 65,714 + +0.6 65,714 + -1.1 65,714 + +0.2 65,715 - +0.1 65,715 - +1.5 65,715 - -2.0 65,731 - -0.7 65,732 + +1.2 65,732 + -0.2 65,733 - -1.3 65,752 - +0.3 65,752 - +0.6 65,752 - -0.4 65,754 + -0.5 65,754 + +0.2 65,754 + -0.4 65,755 - -1.3 65,755 - -0.2 65,758 + +0.2 65,759 - -2.0 65,828 + EX31_RS02935 0.10 +0.7 65,828 + EX31_RS02935 0.10 +0.7 65,828 + EX31_RS02935 0.10 +0.2 65,829 - EX31_RS02935 0.10 +1.9 65,829 - EX31_RS02935 0.10 -0.6 65,835 + EX31_RS02935 0.11 +1.6 65,841 - EX31_RS02935 0.11 -0.3 65,903 + EX31_RS02935 0.17 -0.3 65,904 - EX31_RS02935 0.17 -0.8 65,904 - EX31_RS02935 0.17 -0.7 65,907 + EX31_RS02935 0.17 -0.0 65,907 + EX31_RS02935 0.17 -0.1 65,908 - EX31_RS02935 0.17 +0.6 65,908 - EX31_RS02935 0.17 +0.9 65,928 + EX31_RS02935 0.19 -0.4 65,929 - EX31_RS02935 0.19 +0.5 65,929 - EX31_RS02935 0.19 +0.0 65,929 - EX31_RS02935 0.19 -1.5 65,929 - EX31_RS02935 0.19 +1.5 65,937 + EX31_RS02935 0.20 +0.2 65,938 - EX31_RS02935 0.20 +0.0 65,938 - EX31_RS02935 0.20 -0.9 65,976 + EX31_RS02935 0.23 +0.3 65,977 - EX31_RS02935 0.23 -0.5 65,977 - EX31_RS02935 0.23 -1.2 66,001 - EX31_RS02935 0.25 +0.7 66,004 + EX31_RS02935 0.26 +0.6 66,004 + EX31_RS02935 0.26 +1.2 66,004 + EX31_RS02935 0.26 +0.7 66,004 + EX31_RS02935 0.26 +0.4 66,004 + EX31_RS02935 0.26 -0.6 66,004 + EX31_RS02935 0.26 +1.4 66,005 - EX31_RS02935 0.26 +0.5 66,005 - EX31_RS02935 0.26 -0.7 66,079 + EX31_RS02935 0.32 +0.2 66,079 + EX31_RS02935 0.32 +1.3 66,080 - EX31_RS02935 0.32 +1.4 66,096 + EX31_RS02935 0.34 -0.9 66,096 + EX31_RS02935 0.34 -0.9 66,096 + EX31_RS02935 0.34 +1.0 66,097 - EX31_RS02935 0.34 -0.0 66,097 - EX31_RS02935 0.34 +0.3 66,097 - EX31_RS02935 0.34 +0.4 66,103 + EX31_RS02935 0.34 -0.0 66,103 + EX31_RS02935 0.34 +0.9 66,103 + EX31_RS02935 0.34 -0.5 66,103 + EX31_RS02935 0.34 -0.3 66,103 + EX31_RS02935 0.34 -0.6 66,103 + EX31_RS02935 0.34 +0.3 66,104 - EX31_RS02935 0.34 +0.4 66,104 - EX31_RS02935 0.34 +0.1 66,104 - EX31_RS02935 0.34 -1.5 66,108 - EX31_RS02935 0.35 +0.3 66,206 - EX31_RS02935 0.43 +1.1 66,206 - EX31_RS02935 0.43 +0.2 66,208 + EX31_RS02935 0.44 +0.8 66,208 + EX31_RS02935 0.44 -0.4 66,216 + EX31_RS02935 0.44 -0.9 66,216 + EX31_RS02935 0.44 -0.0 66,216 + EX31_RS02935 0.44 +0.5 66,216 + EX31_RS02935 0.44 -1.1
Or see this region's nucleotide sequence