Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02550 and EX31_RS02555 overlap by 4 nucleotides EX31_RS02555 and EX31_RS02560 overlap by 8 nucleotides EX31_RS02560 and EX31_RS02565 overlap by 26 nucleotides EX31_RS02565 and EX31_RS02570 are separated by 181 nucleotides
EX31_RS02550: EX31_RS02550 - MATE family efflux transporter, at 541,671 to 543,023
_RS02550
EX31_RS02555: EX31_RS02555 - hypothetical protein, at 543,020 to 543,661
_RS02555
EX31_RS02560: EX31_RS02560 - hypothetical protein, at 543,654 to 543,914
_RS02560
EX31_RS02565: EX31_RS02565 - 3-oxoacyl-ACP synthase, at 543,889 to 544,848
_RS02565
EX31_RS02570: EX31_RS02570 - ABC transporter ATP-binding protein, at 545,030 to 546,829
_RS02570
Position (kb) 543
544
545 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 543.017 kb on + strand at 543.017 kb on + strand at 543.018 kb on - strand at 543.018 kb on - strand at 543.023 kb on + strand at 543.109 kb on - strand, within EX31_RS02555 at 543.109 kb on - strand, within EX31_RS02555 at 543.134 kb on + strand, within EX31_RS02555 at 543.139 kb on - strand, within EX31_RS02555 at 543.217 kb on - strand, within EX31_RS02555 at 543.217 kb on - strand, within EX31_RS02555 at 543.217 kb on - strand, within EX31_RS02555 at 543.229 kb on + strand, within EX31_RS02555 at 543.300 kb on - strand, within EX31_RS02555 at 543.481 kb on + strand, within EX31_RS02555 at 543.482 kb on - strand, within EX31_RS02555 at 543.702 kb on - strand, within EX31_RS02560 at 543.802 kb on - strand, within EX31_RS02560 at 543.928 kb on - strand at 543.951 kb on + strand at 544.075 kb on - strand, within EX31_RS02565 at 544.166 kb on - strand, within EX31_RS02565 at 544.167 kb on + strand, within EX31_RS02565 at 544.221 kb on - strand, within EX31_RS02565 at 544.399 kb on - strand, within EX31_RS02565 at 544.516 kb on - strand, within EX31_RS02565 at 544.692 kb on + strand, within EX31_RS02565 at 544.734 kb on - strand, within EX31_RS02565 at 544.788 kb on + strand at 544.810 kb on - strand at 544.836 kb on + strand at 544.848 kb on + strand at 544.849 kb on - strand at 544.849 kb on - strand at 544.849 kb on - strand at 544.851 kb on - strand at 544.867 kb on - strand at 544.979 kb on + strand at 544.980 kb on - strand at 545.033 kb on + strand at 545.033 kb on + strand at 545.034 kb on - strand at 545.088 kb on + strand at 545.088 kb on + strand at 545.089 kb on - strand at 545.193 kb on + strand at 545.256 kb on + strand, within EX31_RS02570 at 545.256 kb on + strand, within EX31_RS02570 at 545.256 kb on + strand, within EX31_RS02570 at 545.256 kb on + strand, within EX31_RS02570 at 545.257 kb on - strand, within EX31_RS02570 at 545.257 kb on - strand, within EX31_RS02570 at 545.257 kb on - strand, within EX31_RS02570 at 545.257 kb on - strand, within EX31_RS02570 at 545.257 kb on - strand, within EX31_RS02570 at 545.257 kb on - strand, within EX31_RS02570 at 545.319 kb on + strand, within EX31_RS02570 at 545.455 kb on + strand, within EX31_RS02570 at 545.456 kb on - strand, within EX31_RS02570 at 545.503 kb on + strand, within EX31_RS02570 at 545.582 kb on + strand, within EX31_RS02570 at 545.757 kb on - strand, within EX31_RS02570
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 543,017 + +0.5 543,017 + +1.4 543,018 - -1.4 543,018 - -0.4 543,023 + -0.5 543,109 - EX31_RS02555 0.14 -0.6 543,109 - EX31_RS02555 0.14 -0.0 543,134 + EX31_RS02555 0.18 -0.6 543,139 - EX31_RS02555 0.19 +0.5 543,217 - EX31_RS02555 0.31 -0.2 543,217 - EX31_RS02555 0.31 -1.2 543,217 - EX31_RS02555 0.31 +0.1 543,229 + EX31_RS02555 0.33 -0.1 543,300 - EX31_RS02555 0.44 -1.0 543,481 + EX31_RS02555 0.72 +0.3 543,482 - EX31_RS02555 0.72 -1.8 543,702 - EX31_RS02560 0.18 -1.9 543,802 - EX31_RS02560 0.57 -0.2 543,928 - -0.6 543,951 + +1.1 544,075 - EX31_RS02565 0.19 -1.3 544,166 - EX31_RS02565 0.29 +0.3 544,167 + EX31_RS02565 0.29 +0.2 544,221 - EX31_RS02565 0.35 -0.1 544,399 - EX31_RS02565 0.53 -0.1 544,516 - EX31_RS02565 0.65 -1.5 544,692 + EX31_RS02565 0.84 -1.6 544,734 - EX31_RS02565 0.88 +0.5 544,788 + -0.0 544,810 - -0.5 544,836 + +0.1 544,848 + +0.2 544,849 - +0.2 544,849 - +1.0 544,849 - +0.3 544,851 - +0.2 544,867 - +1.2 544,979 + +1.7 544,980 - +0.3 545,033 + -1.2 545,033 + +0.4 545,034 - +1.1 545,088 + +1.7 545,088 + +0.9 545,089 - +0.3 545,193 + -0.2 545,256 + EX31_RS02570 0.13 +0.5 545,256 + EX31_RS02570 0.13 -0.1 545,256 + EX31_RS02570 0.13 +0.3 545,256 + EX31_RS02570 0.13 -1.0 545,257 - EX31_RS02570 0.13 +3.0 545,257 - EX31_RS02570 0.13 +1.1 545,257 - EX31_RS02570 0.13 +0.3 545,257 - EX31_RS02570 0.13 +0.2 545,257 - EX31_RS02570 0.13 -0.1 545,257 - EX31_RS02570 0.13 -0.3 545,319 + EX31_RS02570 0.16 -0.8 545,455 + EX31_RS02570 0.24 -0.1 545,456 - EX31_RS02570 0.24 -1.7 545,503 + EX31_RS02570 0.26 -1.0 545,582 + EX31_RS02570 0.31 -0.1 545,757 - EX31_RS02570 0.40 -0.5
Or see this region's nucleotide sequence