Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01885 and EX31_RS01890 are separated by 113 nucleotides EX31_RS01890 and EX31_RS01895 are separated by 73 nucleotides EX31_RS01895 and EX31_RS01900 are separated by 51 nucleotides EX31_RS01900 and EX31_RS01905 overlap by 4 nucleotides EX31_RS01905 and EX31_RS01910 are separated by 46 nucleotides
EX31_RS01885: EX31_RS01885 - type IV secretion protein Rhs, at 409,891 to 410,289
_RS01885
EX31_RS01890: EX31_RS01890 - hypothetical protein, at 410,403 to 410,747
_RS01890
EX31_RS01895: EX31_RS01895 - type VI secretion system tip protein VgrG, at 410,821 to 413,367
_RS01895
EX31_RS01900: EX31_RS01900 - hypothetical protein, at 413,419 to 413,703
_RS01900
EX31_RS01905: EX31_RS01905 - hypothetical protein, at 413,700 to 414,128
_RS01905
EX31_RS01910: EX31_RS01910 - lipase family protein, at 414,175 to 416,124
_RS01910
Position (kb) 410
411
412
413
414 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 409.845 kb on + strand at 409.975 kb on + strand, within EX31_RS01885 at 410.114 kb on + strand, within EX31_RS01885 at 410.157 kb on - strand, within EX31_RS01885 at 410.193 kb on + strand, within EX31_RS01885 at 410.257 kb on + strand at 410.328 kb on + strand at 410.358 kb on + strand at 410.882 kb on - strand at 410.972 kb on + strand at 410.983 kb on - strand at 411.030 kb on + strand at 411.030 kb on + strand at 411.188 kb on + strand, within EX31_RS01895 at 411.188 kb on + strand, within EX31_RS01895 at 411.188 kb on + strand, within EX31_RS01895 at 411.188 kb on + strand, within EX31_RS01895 at 411.193 kb on - strand, within EX31_RS01895 at 411.245 kb on + strand, within EX31_RS01895 at 411.246 kb on - strand, within EX31_RS01895 at 411.254 kb on + strand, within EX31_RS01895 at 411.254 kb on + strand, within EX31_RS01895 at 411.432 kb on - strand, within EX31_RS01895 at 411.432 kb on - strand, within EX31_RS01895 at 411.435 kb on + strand, within EX31_RS01895 at 411.435 kb on + strand, within EX31_RS01895 at 411.460 kb on + strand, within EX31_RS01895 at 411.662 kb on - strand, within EX31_RS01895 at 411.673 kb on + strand, within EX31_RS01895 at 411.825 kb on - strand, within EX31_RS01895 at 411.876 kb on - strand, within EX31_RS01895 at 411.927 kb on + strand, within EX31_RS01895 at 411.941 kb on + strand, within EX31_RS01895 at 411.941 kb on + strand, within EX31_RS01895 at 411.941 kb on + strand, within EX31_RS01895 at 411.948 kb on + strand, within EX31_RS01895 at 412.057 kb on - strand, within EX31_RS01895 at 412.057 kb on - strand, within EX31_RS01895 at 412.061 kb on - strand, within EX31_RS01895 at 412.180 kb on + strand, within EX31_RS01895 at 412.180 kb on + strand, within EX31_RS01895 at 412.181 kb on - strand, within EX31_RS01895 at 412.181 kb on - strand, within EX31_RS01895 at 412.181 kb on - strand, within EX31_RS01895 at 412.181 kb on - strand, within EX31_RS01895 at 412.181 kb on - strand, within EX31_RS01895 at 412.185 kb on + strand, within EX31_RS01895 at 412.255 kb on + strand, within EX31_RS01895 at 412.255 kb on + strand, within EX31_RS01895 at 412.255 kb on + strand, within EX31_RS01895 at 412.255 kb on + strand, within EX31_RS01895 at 412.256 kb on - strand, within EX31_RS01895 at 412.256 kb on - strand, within EX31_RS01895 at 412.256 kb on - strand, within EX31_RS01895 at 412.256 kb on - strand, within EX31_RS01895 at 412.258 kb on - strand, within EX31_RS01895 at 412.312 kb on - strand, within EX31_RS01895 at 412.365 kb on + strand, within EX31_RS01895 at 412.365 kb on + strand, within EX31_RS01895 at 412.384 kb on - strand, within EX31_RS01895 at 412.384 kb on - strand, within EX31_RS01895 at 412.387 kb on - strand, within EX31_RS01895 at 412.447 kb on - strand, within EX31_RS01895 at 412.447 kb on - strand, within EX31_RS01895 at 412.489 kb on - strand, within EX31_RS01895 at 412.520 kb on + strand, within EX31_RS01895 at 412.520 kb on + strand, within EX31_RS01895 at 412.524 kb on + strand, within EX31_RS01895 at 412.686 kb on + strand, within EX31_RS01895 at 412.687 kb on - strand, within EX31_RS01895 at 412.687 kb on - strand, within EX31_RS01895 at 412.716 kb on + strand, within EX31_RS01895 at 412.766 kb on + strand, within EX31_RS01895 at 412.767 kb on - strand, within EX31_RS01895 at 412.822 kb on - strand, within EX31_RS01895 at 412.823 kb on + strand, within EX31_RS01895 at 412.823 kb on + strand, within EX31_RS01895 at 412.823 kb on + strand, within EX31_RS01895 at 412.823 kb on + strand, within EX31_RS01895 at 412.823 kb on + strand, within EX31_RS01895 at 412.824 kb on - strand, within EX31_RS01895 at 412.824 kb on - strand, within EX31_RS01895 at 412.824 kb on - strand, within EX31_RS01895 at 412.824 kb on - strand, within EX31_RS01895 at 412.833 kb on + strand, within EX31_RS01895 at 412.866 kb on - strand, within EX31_RS01895 at 412.871 kb on + strand, within EX31_RS01895 at 412.871 kb on + strand, within EX31_RS01895 at 412.872 kb on - strand, within EX31_RS01895 at 412.872 kb on - strand, within EX31_RS01895 at 413.028 kb on + strand, within EX31_RS01895 at 413.029 kb on - strand, within EX31_RS01895 at 413.029 kb on - strand, within EX31_RS01895 at 413.044 kb on + strand, within EX31_RS01895 at 413.170 kb on + strand at 413.171 kb on - strand at 413.172 kb on + strand at 413.172 kb on + strand at 413.190 kb on - strand at 413.299 kb on - strand at 413.300 kb on + strand at 413.301 kb on - strand at 413.316 kb on + strand at 413.323 kb on - strand at 413.331 kb on - strand at 413.381 kb on + strand at 413.381 kb on + strand at 413.382 kb on - strand at 413.386 kb on + strand at 413.387 kb on - strand at 413.387 kb on - strand at 413.392 kb on + strand at 413.485 kb on + strand, within EX31_RS01900 at 413.487 kb on + strand, within EX31_RS01900 at 413.488 kb on - strand, within EX31_RS01900 at 413.493 kb on + strand, within EX31_RS01900 at 413.493 kb on + strand, within EX31_RS01900 at 413.493 kb on + strand, within EX31_RS01900 at 413.526 kb on + strand, within EX31_RS01900 at 413.526 kb on + strand, within EX31_RS01900 at 413.527 kb on - strand, within EX31_RS01900 at 413.527 kb on - strand, within EX31_RS01900 at 413.626 kb on - strand, within EX31_RS01900 at 413.679 kb on + strand at 413.679 kb on + strand at 413.680 kb on - strand at 413.787 kb on - strand, within EX31_RS01905 at 413.792 kb on - strand, within EX31_RS01905 at 413.906 kb on + strand, within EX31_RS01905 at 413.907 kb on - strand, within EX31_RS01905 at 413.930 kb on + strand, within EX31_RS01905 at 414.044 kb on + strand, within EX31_RS01905 at 414.044 kb on + strand, within EX31_RS01905 at 414.085 kb on + strand, within EX31_RS01905 at 414.096 kb on + strand at 414.226 kb on + strand at 414.226 kb on + strand at 414.226 kb on + strand at 414.226 kb on + strand at 414.227 kb on - strand at 414.227 kb on - strand at 414.227 kb on - strand at 414.260 kb on + strand at 414.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 409,845 + -0.7 409,975 + EX31_RS01885 0.21 -0.5 410,114 + EX31_RS01885 0.56 -0.3 410,157 - EX31_RS01885 0.67 +0.5 410,193 + EX31_RS01885 0.76 -1.6 410,257 + +0.0 410,328 + +0.6 410,358 + +0.9 410,882 - -1.0 410,972 + -1.8 410,983 - -0.3 411,030 + +0.2 411,030 + +0.8 411,188 + EX31_RS01895 0.14 -1.0 411,188 + EX31_RS01895 0.14 -1.2 411,188 + EX31_RS01895 0.14 +0.9 411,188 + EX31_RS01895 0.14 +0.8 411,193 - EX31_RS01895 0.15 +0.9 411,245 + EX31_RS01895 0.17 -1.0 411,246 - EX31_RS01895 0.17 +0.9 411,254 + EX31_RS01895 0.17 -0.3 411,254 + EX31_RS01895 0.17 +0.2 411,432 - EX31_RS01895 0.24 -0.0 411,432 - EX31_RS01895 0.24 +1.2 411,435 + EX31_RS01895 0.24 +0.9 411,435 + EX31_RS01895 0.24 +1.1 411,460 + EX31_RS01895 0.25 -0.6 411,662 - EX31_RS01895 0.33 -0.2 411,673 + EX31_RS01895 0.33 -1.0 411,825 - EX31_RS01895 0.39 -1.7 411,876 - EX31_RS01895 0.41 -1.1 411,927 + EX31_RS01895 0.43 -0.0 411,941 + EX31_RS01895 0.44 +0.9 411,941 + EX31_RS01895 0.44 -0.1 411,941 + EX31_RS01895 0.44 +0.4 411,948 + EX31_RS01895 0.44 -0.5 412,057 - EX31_RS01895 0.49 -0.3 412,057 - EX31_RS01895 0.49 -0.6 412,061 - EX31_RS01895 0.49 -0.5 412,180 + EX31_RS01895 0.53 -1.2 412,180 + EX31_RS01895 0.53 +1.7 412,181 - EX31_RS01895 0.53 +0.5 412,181 - EX31_RS01895 0.53 -1.8 412,181 - EX31_RS01895 0.53 -0.1 412,181 - EX31_RS01895 0.53 -0.2 412,181 - EX31_RS01895 0.53 -1.4 412,185 + EX31_RS01895 0.54 +1.2 412,255 + EX31_RS01895 0.56 +1.0 412,255 + EX31_RS01895 0.56 +0.1 412,255 + EX31_RS01895 0.56 +0.7 412,255 + EX31_RS01895 0.56 +0.9 412,256 - EX31_RS01895 0.56 -1.8 412,256 - EX31_RS01895 0.56 +1.4 412,256 - EX31_RS01895 0.56 -0.2 412,256 - EX31_RS01895 0.56 -2.5 412,258 - EX31_RS01895 0.56 +0.2 412,312 - EX31_RS01895 0.59 +1.1 412,365 + EX31_RS01895 0.61 +0.4 412,365 + EX31_RS01895 0.61 -0.1 412,384 - EX31_RS01895 0.61 -0.4 412,384 - EX31_RS01895 0.61 -0.0 412,387 - EX31_RS01895 0.61 +0.2 412,447 - EX31_RS01895 0.64 -0.0 412,447 - EX31_RS01895 0.64 +0.4 412,489 - EX31_RS01895 0.65 +0.4 412,520 + EX31_RS01895 0.67 +0.9 412,520 + EX31_RS01895 0.67 -1.9 412,524 + EX31_RS01895 0.67 +0.7 412,686 + EX31_RS01895 0.73 -0.2 412,687 - EX31_RS01895 0.73 -0.3 412,687 - EX31_RS01895 0.73 -0.4 412,716 + EX31_RS01895 0.74 -1.3 412,766 + EX31_RS01895 0.76 -2.9 412,767 - EX31_RS01895 0.76 +0.3 412,822 - EX31_RS01895 0.79 -0.3 412,823 + EX31_RS01895 0.79 -0.1 412,823 + EX31_RS01895 0.79 -1.1 412,823 + EX31_RS01895 0.79 +0.9 412,823 + EX31_RS01895 0.79 -0.7 412,823 + EX31_RS01895 0.79 -0.1 412,824 - EX31_RS01895 0.79 -0.7 412,824 - EX31_RS01895 0.79 -1.9 412,824 - EX31_RS01895 0.79 +0.4 412,824 - EX31_RS01895 0.79 +0.3 412,833 + EX31_RS01895 0.79 +1.4 412,866 - EX31_RS01895 0.80 -1.1 412,871 + EX31_RS01895 0.80 +0.7 412,871 + EX31_RS01895 0.80 -3.0 412,872 - EX31_RS01895 0.81 +0.8 412,872 - EX31_RS01895 0.81 +0.5 413,028 + EX31_RS01895 0.87 -0.5 413,029 - EX31_RS01895 0.87 -0.5 413,029 - EX31_RS01895 0.87 +2.1 413,044 + EX31_RS01895 0.87 +0.6 413,170 + +0.5 413,171 - -0.4 413,172 + +0.7 413,172 + +0.3 413,190 - -0.4 413,299 - -0.2 413,300 + -0.3 413,301 - -0.1 413,316 + +0.4 413,323 - +0.1 413,331 - -1.1 413,381 + +0.3 413,381 + -0.3 413,382 - -0.2 413,386 + +1.8 413,387 - +0.5 413,387 - -0.8 413,392 + +0.1 413,485 + EX31_RS01900 0.23 -2.9 413,487 + EX31_RS01900 0.24 +0.6 413,488 - EX31_RS01900 0.24 +0.7 413,493 + EX31_RS01900 0.26 +0.5 413,493 + EX31_RS01900 0.26 +0.7 413,493 + EX31_RS01900 0.26 +0.2 413,526 + EX31_RS01900 0.38 +0.4 413,526 + EX31_RS01900 0.38 -3.0 413,527 - EX31_RS01900 0.38 +0.5 413,527 - EX31_RS01900 0.38 +1.0 413,626 - EX31_RS01900 0.73 -1.2 413,679 + -0.8 413,679 + +0.7 413,680 - +0.2 413,787 - EX31_RS01905 0.20 -0.2 413,792 - EX31_RS01905 0.21 -1.4 413,906 + EX31_RS01905 0.48 +2.2 413,907 - EX31_RS01905 0.48 +1.0 413,930 + EX31_RS01905 0.54 +1.6 414,044 + EX31_RS01905 0.80 +0.3 414,044 + EX31_RS01905 0.80 +0.4 414,085 + EX31_RS01905 0.90 +0.8 414,096 + -0.8 414,226 + +0.9 414,226 + +0.6 414,226 + -2.2 414,226 + -0.6 414,227 - -1.6 414,227 - -2.5 414,227 - -0.4 414,260 + -1.3 414,298 - -0.6
Or see this region's nucleotide sequence