Strain Fitness in Rahnella sp. WP5 around EX31_RS00910

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00900 and EX31_RS00905 are separated by 46 nucleotidesEX31_RS00905 and EX31_RS00910 are separated by 118 nucleotidesEX31_RS00910 and EX31_RS00915 are separated by 89 nucleotides EX31_RS00900: EX31_RS00900 - mechanosensitive ion channel, at 196,087 to 197,709 _RS00900 EX31_RS00905: EX31_RS00905 - ester cyclase, at 197,756 to 198,202 _RS00905 EX31_RS00910: EX31_RS00910 - LysR family transcriptional regulator, at 198,321 to 199,235 _RS00910 EX31_RS00915: EX31_RS00915 - aldo/keto reductase family oxidoreductase, at 199,325 to 200,185 _RS00915 Position (kb) 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1at 197.497 kb on + strand, within EX31_RS00900at 197.497 kb on + strand, within EX31_RS00900at 197.498 kb on - strand, within EX31_RS00900at 197.506 kb on + strand, within EX31_RS00900at 197.585 kb on + strandat 197.586 kb on - strandat 197.586 kb on - strandat 197.586 kb on - strandat 197.586 kb on - strandat 197.586 kb on - strandat 197.599 kb on - strandat 197.599 kb on - strandat 197.664 kb on + strandat 197.715 kb on - strandat 197.739 kb on + strandat 198.070 kb on + strand, within EX31_RS00905at 198.105 kb on - strand, within EX31_RS00905at 198.154 kb on + strand, within EX31_RS00905at 198.154 kb on + strand, within EX31_RS00905at 198.154 kb on + strand, within EX31_RS00905at 198.154 kb on + strand, within EX31_RS00905at 198.155 kb on - strand, within EX31_RS00905at 198.155 kb on - strand, within EX31_RS00905at 198.155 kb on - strand, within EX31_RS00905at 198.240 kb on + strandat 198.241 kb on - strandat 198.261 kb on + strandat 198.262 kb on - strandat 198.262 kb on - strandat 198.272 kb on + strandat 198.272 kb on + strandat 198.281 kb on + strandat 198.304 kb on - strandat 198.304 kb on - strandat 198.313 kb on + strandat 198.313 kb on + strandat 198.313 kb on + strandat 198.314 kb on - strandat 198.314 kb on - strandat 198.321 kb on - strandat 198.330 kb on - strandat 198.507 kb on - strand, within EX31_RS00910at 198.618 kb on - strand, within EX31_RS00910at 198.665 kb on + strand, within EX31_RS00910at 198.889 kb on + strand, within EX31_RS00910at 198.897 kb on + strand, within EX31_RS00910at 198.914 kb on + strand, within EX31_RS00910at 198.942 kb on + strand, within EX31_RS00910at 199.047 kb on + strand, within EX31_RS00910at 199.078 kb on + strand, within EX31_RS00910at 199.438 kb on + strand, within EX31_RS00915at 199.566 kb on + strand, within EX31_RS00915at 199.567 kb on - strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.629 kb on + strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.630 kb on - strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.706 kb on + strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.707 kb on - strand, within EX31_RS00915at 199.708 kb on + strand, within EX31_RS00915at 199.709 kb on - strand, within EX31_RS00915at 199.849 kb on + strand, within EX31_RS00915at 199.850 kb on - strand, within EX31_RS00915at 199.984 kb on + strand, within EX31_RS00915at 199.985 kb on - strand, within EX31_RS00915at 199.985 kb on - strand, within EX31_RS00915at 200.030 kb on - strand, within EX31_RS00915at 200.132 kb on + strandat 200.164 kb on - strandat 200.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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197,497 + EX31_RS00900 0.87 +1.4
197,497 + EX31_RS00900 0.87 -0.4
197,498 - EX31_RS00900 0.87 -0.0
197,506 + EX31_RS00900 0.87 -1.0
197,585 + +1.2
197,586 - -0.4
197,586 - -1.5
197,586 - -0.3
197,586 - +0.7
197,586 - +0.6
197,599 - +0.3
197,599 - +0.1
197,664 + +0.3
197,715 - -0.3
197,739 + -1.1
198,070 + EX31_RS00905 0.70 -1.8
198,105 - EX31_RS00905 0.78 +0.2
198,154 + EX31_RS00905 0.89 +0.9
198,154 + EX31_RS00905 0.89 +0.4
198,154 + EX31_RS00905 0.89 -0.7
198,154 + EX31_RS00905 0.89 -0.2
198,155 - EX31_RS00905 0.89 -2.9
198,155 - EX31_RS00905 0.89 +0.9
198,155 - EX31_RS00905 0.89 +0.1
198,240 + -1.0
198,241 - +1.1
198,261 + -0.5
198,262 - +0.6
198,262 - +0.2
198,272 + -0.2
198,272 + +0.2
198,281 + -0.0
198,304 - -1.1
198,304 - -0.5
198,313 + -0.9
198,313 + -1.2
198,313 + -0.8
198,314 - -0.4
198,314 - -1.2
198,321 - +0.1
198,330 - +0.2
198,507 - EX31_RS00910 0.20 +0.9
198,618 - EX31_RS00910 0.32 +1.1
198,665 + EX31_RS00910 0.38 +0.1
198,889 + EX31_RS00910 0.62 +0.7
198,897 + EX31_RS00910 0.63 +0.7
198,914 + EX31_RS00910 0.65 -0.4
198,942 + EX31_RS00910 0.68 +1.3
199,047 + EX31_RS00910 0.79 +0.6
199,078 + EX31_RS00910 0.83 +1.6
199,438 + EX31_RS00915 0.13 +0.1
199,566 + EX31_RS00915 0.28 +0.6
199,567 - EX31_RS00915 0.28 -0.2
199,629 + EX31_RS00915 0.35 -0.3
199,629 + EX31_RS00915 0.35 -0.6
199,629 + EX31_RS00915 0.35 -0.1
199,629 + EX31_RS00915 0.35 +0.8
199,629 + EX31_RS00915 0.35 -1.5
199,629 + EX31_RS00915 0.35 -1.0
199,629 + EX31_RS00915 0.35 +1.0
199,629 + EX31_RS00915 0.35 -0.4
199,629 + EX31_RS00915 0.35 -0.0
199,629 + EX31_RS00915 0.35 -0.7
199,629 + EX31_RS00915 0.35 +1.2
199,629 + EX31_RS00915 0.35 -2.5
199,629 + EX31_RS00915 0.35 -2.3
199,629 + EX31_RS00915 0.35 -1.5
199,629 + EX31_RS00915 0.35 +0.4
199,630 - EX31_RS00915 0.35 +0.1
199,630 - EX31_RS00915 0.35 +0.4
199,630 - EX31_RS00915 0.35 -0.2
199,630 - EX31_RS00915 0.35 +0.8
199,630 - EX31_RS00915 0.35 +1.1
199,630 - EX31_RS00915 0.35 +0.1
199,630 - EX31_RS00915 0.35 +0.1
199,630 - EX31_RS00915 0.35 -0.2
199,630 - EX31_RS00915 0.35 -0.6
199,706 + EX31_RS00915 0.44 -1.8
199,706 + EX31_RS00915 0.44 -0.6
199,706 + EX31_RS00915 0.44 -1.1
199,706 + EX31_RS00915 0.44 -0.4
199,706 + EX31_RS00915 0.44 +0.1
199,706 + EX31_RS00915 0.44 +0.2
199,707 - EX31_RS00915 0.44 +0.5
199,707 - EX31_RS00915 0.44 +1.4
199,707 - EX31_RS00915 0.44 -0.4
199,707 - EX31_RS00915 0.44 +0.1
199,708 + EX31_RS00915 0.44 +0.0
199,709 - EX31_RS00915 0.45 +0.2
199,849 + EX31_RS00915 0.61 -0.1
199,850 - EX31_RS00915 0.61 -0.6
199,984 + EX31_RS00915 0.77 -1.7
199,985 - EX31_RS00915 0.77 -0.6
199,985 - EX31_RS00915 0.77 -0.1
200,030 - EX31_RS00915 0.82 +0.4
200,132 + -1.2
200,164 - -0.6
200,218 - -0.9

Or see this region's nucleotide sequence