Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00580 and EX31_RS00585 are separated by 115 nucleotides EX31_RS00585 and EX31_RS00590 are separated by 60 nucleotides EX31_RS00590 and EX31_RS00595 overlap by 4 nucleotides EX31_RS00595 and EX31_RS00600 are separated by 195 nucleotides EX31_RS00600 and EX31_RS00605 are separated by 167 nucleotides
EX31_RS00580: EX31_RS00580 - LysR family transcriptional regulator, at 123,539 to 124,393
_RS00580
EX31_RS00585: EX31_RS00585 - multidrug efflux SMR transporter, at 124,509 to 124,829
_RS00585
EX31_RS00590: EX31_RS00590 - helix-turn-helix transcriptional regulator, at 124,890 to 125,363
_RS00590
EX31_RS00595: EX31_RS00595 - type II toxin-antitoxin system HipA family toxin, at 125,360 to 126,709
_RS00595
EX31_RS00600: EX31_RS00600 - DUF1471 domain-containing protein, at 126,905 to 127,126
_RS00600
EX31_RS00605: EX31_RS00605 - NAD(P)H-binding protein, at 127,294 to 127,917
_RS00605
Position (kb) 125
126
127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 124.392 kb on - strand at 124.421 kb on + strand at 124.421 kb on + strand at 124.421 kb on + strand at 124.422 kb on - strand at 124.469 kb on - strand at 124.497 kb on + strand at 124.522 kb on - strand at 124.604 kb on + strand, within EX31_RS00585 at 124.611 kb on - strand, within EX31_RS00585 at 124.627 kb on + strand, within EX31_RS00585 at 124.683 kb on + strand, within EX31_RS00585 at 124.683 kb on + strand, within EX31_RS00585 at 124.683 kb on + strand, within EX31_RS00585 at 124.683 kb on + strand, within EX31_RS00585 at 124.684 kb on - strand, within EX31_RS00585 at 124.754 kb on + strand, within EX31_RS00585 at 124.827 kb on + strand at 124.865 kb on - strand at 124.865 kb on - strand at 124.892 kb on - strand at 124.921 kb on - strand at 125.439 kb on - strand at 125.556 kb on + strand, within EX31_RS00595 at 125.563 kb on - strand, within EX31_RS00595 at 125.696 kb on - strand, within EX31_RS00595 at 125.774 kb on - strand, within EX31_RS00595 at 125.804 kb on - strand, within EX31_RS00595 at 125.804 kb on - strand, within EX31_RS00595 at 125.854 kb on - strand, within EX31_RS00595 at 125.890 kb on - strand, within EX31_RS00595 at 125.918 kb on - strand, within EX31_RS00595 at 125.971 kb on - strand, within EX31_RS00595 at 126.042 kb on + strand, within EX31_RS00595 at 126.043 kb on - strand, within EX31_RS00595 at 126.049 kb on - strand, within EX31_RS00595 at 126.078 kb on - strand, within EX31_RS00595 at 126.078 kb on - strand, within EX31_RS00595 at 126.103 kb on - strand, within EX31_RS00595 at 126.115 kb on - strand, within EX31_RS00595 at 126.115 kb on - strand, within EX31_RS00595 at 126.148 kb on - strand, within EX31_RS00595 at 126.152 kb on - strand, within EX31_RS00595 at 126.152 kb on - strand, within EX31_RS00595 at 126.179 kb on - strand, within EX31_RS00595 at 126.293 kb on + strand, within EX31_RS00595 at 126.294 kb on - strand, within EX31_RS00595 at 126.294 kb on - strand, within EX31_RS00595 at 126.294 kb on - strand, within EX31_RS00595 at 126.294 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.326 kb on - strand, within EX31_RS00595 at 126.328 kb on - strand, within EX31_RS00595 at 126.328 kb on - strand, within EX31_RS00595 at 126.435 kb on + strand, within EX31_RS00595 at 126.436 kb on - strand, within EX31_RS00595 at 126.436 kb on - strand, within EX31_RS00595 at 126.472 kb on + strand, within EX31_RS00595 at 126.473 kb on - strand, within EX31_RS00595 at 126.473 kb on - strand, within EX31_RS00595 at 126.476 kb on - strand, within EX31_RS00595 at 126.578 kb on - strand at 126.600 kb on + strand at 126.601 kb on - strand at 126.601 kb on - strand at 126.621 kb on + strand at 126.622 kb on - strand at 126.622 kb on - strand at 126.626 kb on - strand at 126.626 kb on - strand at 126.656 kb on - strand at 126.656 kb on - strand at 126.662 kb on - strand at 126.677 kb on - strand at 126.677 kb on - strand at 126.693 kb on - strand at 126.693 kb on - strand at 126.734 kb on - strand at 126.736 kb on + strand at 126.736 kb on + strand at 126.736 kb on + strand at 126.737 kb on - strand at 126.737 kb on - strand at 126.738 kb on + strand at 126.738 kb on + strand at 126.738 kb on + strand at 126.739 kb on - strand at 126.830 kb on + strand at 126.913 kb on - strand at 126.964 kb on + strand, within EX31_RS00600 at 126.965 kb on - strand, within EX31_RS00600 at 126.966 kb on + strand, within EX31_RS00600 at 126.967 kb on - strand, within EX31_RS00600 at 127.027 kb on + strand, within EX31_RS00600 at 127.027 kb on + strand, within EX31_RS00600 at 127.044 kb on - strand, within EX31_RS00600 at 127.290 kb on + strand at 127.290 kb on + strand at 127.482 kb on + strand, within EX31_RS00605 at 127.482 kb on + strand, within EX31_RS00605 at 127.482 kb on + strand, within EX31_RS00605 at 127.482 kb on + strand, within EX31_RS00605 at 127.482 kb on + strand, within EX31_RS00605 at 127.483 kb on - strand, within EX31_RS00605 at 127.483 kb on - strand, within EX31_RS00605 at 127.483 kb on - strand, within EX31_RS00605 at 127.673 kb on + strand, within EX31_RS00605 at 127.674 kb on - strand, within EX31_RS00605
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 124,392 - +0.4 124,421 + -0.2 124,421 + +0.5 124,421 + -0.5 124,422 - +0.6 124,469 - -0.0 124,497 + -0.2 124,522 - +1.1 124,604 + EX31_RS00585 0.30 +1.6 124,611 - EX31_RS00585 0.32 -1.8 124,627 + EX31_RS00585 0.37 -0.8 124,683 + EX31_RS00585 0.54 -0.3 124,683 + EX31_RS00585 0.54 -0.3 124,683 + EX31_RS00585 0.54 +2.0 124,683 + EX31_RS00585 0.54 +0.4 124,684 - EX31_RS00585 0.55 -0.5 124,754 + EX31_RS00585 0.76 +0.5 124,827 + -1.8 124,865 - +0.9 124,865 - +0.4 124,892 - +0.0 124,921 - -1.4 125,439 - +1.4 125,556 + EX31_RS00595 0.15 +0.2 125,563 - EX31_RS00595 0.15 -0.2 125,696 - EX31_RS00595 0.25 -0.4 125,774 - EX31_RS00595 0.31 +1.2 125,804 - EX31_RS00595 0.33 -0.0 125,804 - EX31_RS00595 0.33 +0.3 125,854 - EX31_RS00595 0.37 -0.4 125,890 - EX31_RS00595 0.39 +0.5 125,918 - EX31_RS00595 0.41 -2.3 125,971 - EX31_RS00595 0.45 +0.3 126,042 + EX31_RS00595 0.51 +0.1 126,043 - EX31_RS00595 0.51 +0.7 126,049 - EX31_RS00595 0.51 +0.6 126,078 - EX31_RS00595 0.53 +0.5 126,078 - EX31_RS00595 0.53 -0.3 126,103 - EX31_RS00595 0.55 -0.9 126,115 - EX31_RS00595 0.56 +0.3 126,115 - EX31_RS00595 0.56 +1.1 126,148 - EX31_RS00595 0.58 -0.1 126,152 - EX31_RS00595 0.59 +1.1 126,152 - EX31_RS00595 0.59 +0.7 126,179 - EX31_RS00595 0.61 +0.7 126,293 + EX31_RS00595 0.69 +0.6 126,294 - EX31_RS00595 0.69 -0.4 126,294 - EX31_RS00595 0.69 +0.4 126,294 - EX31_RS00595 0.69 +0.1 126,294 - EX31_RS00595 0.69 -2.0 126,326 - EX31_RS00595 0.72 -0.2 126,326 - EX31_RS00595 0.72 -0.5 126,326 - EX31_RS00595 0.72 +0.7 126,326 - EX31_RS00595 0.72 +0.3 126,326 - EX31_RS00595 0.72 -0.3 126,326 - EX31_RS00595 0.72 +0.9 126,326 - EX31_RS00595 0.72 -2.8 126,326 - EX31_RS00595 0.72 -0.7 126,326 - EX31_RS00595 0.72 -0.4 126,328 - EX31_RS00595 0.72 +1.4 126,328 - EX31_RS00595 0.72 +0.7 126,435 + EX31_RS00595 0.80 -0.0 126,436 - EX31_RS00595 0.80 -0.1 126,436 - EX31_RS00595 0.80 +0.3 126,472 + EX31_RS00595 0.82 +0.4 126,473 - EX31_RS00595 0.82 -0.6 126,473 - EX31_RS00595 0.82 +0.7 126,476 - EX31_RS00595 0.83 +0.3 126,578 - -1.2 126,600 + -0.7 126,601 - +0.2 126,601 - -0.3 126,621 + +0.4 126,622 - +0.3 126,622 - +0.3 126,626 - -1.9 126,626 - -0.4 126,656 - +1.7 126,656 - -0.8 126,662 - -0.6 126,677 - -0.4 126,677 - -1.6 126,693 - -0.2 126,693 - +0.2 126,734 - -0.6 126,736 + +0.9 126,736 + -2.9 126,736 + +0.8 126,737 - -0.4 126,737 - +0.8 126,738 + +0.0 126,738 + +0.1 126,738 + -0.6 126,739 - +0.4 126,830 + -2.1 126,913 - -0.7 126,964 + EX31_RS00600 0.27 -0.6 126,965 - EX31_RS00600 0.27 +1.0 126,966 + EX31_RS00600 0.27 -0.1 126,967 - EX31_RS00600 0.28 +0.9 127,027 + EX31_RS00600 0.55 +0.2 127,027 + EX31_RS00600 0.55 +1.2 127,044 - EX31_RS00600 0.63 +1.1 127,290 + -0.0 127,290 + -1.0 127,482 + EX31_RS00605 0.30 -0.3 127,482 + EX31_RS00605 0.30 -1.2 127,482 + EX31_RS00605 0.30 +0.0 127,482 + EX31_RS00605 0.30 -0.2 127,482 + EX31_RS00605 0.30 +0.1 127,483 - EX31_RS00605 0.30 +0.1 127,483 - EX31_RS00605 0.30 +0.5 127,483 - EX31_RS00605 0.30 -0.1 127,673 + EX31_RS00605 0.61 +0.0 127,674 - EX31_RS00605 0.61 +0.8
Or see this region's nucleotide sequence