Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18075 and EX31_RS18080 are separated by 5 nucleotides EX31_RS18080 and EX31_RS18085 are separated by 110 nucleotides
EX31_RS18075: EX31_RS18075 - ABC transporter ATP-binding protein, at 174,590 to 176,494
_RS18075
EX31_RS18080: EX31_RS18080 - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 176,500 to 178,620
_RS18080
EX31_RS18085: EX31_RS18085 - MOSC domain-containing protein, at 178,731 to 179,834
_RS18085
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.516 kb on - strand, within EX31_RS18075 at 175.518 kb on + strand, within EX31_RS18075 at 175.618 kb on + strand, within EX31_RS18075 at 175.773 kb on + strand, within EX31_RS18075 at 175.774 kb on - strand, within EX31_RS18075 at 175.774 kb on - strand, within EX31_RS18075 at 175.782 kb on + strand, within EX31_RS18075 at 175.783 kb on - strand, within EX31_RS18075 at 175.787 kb on - strand, within EX31_RS18075 at 175.795 kb on - strand, within EX31_RS18075 at 175.795 kb on - strand, within EX31_RS18075 at 175.876 kb on + strand, within EX31_RS18075 at 175.877 kb on - strand, within EX31_RS18075 at 175.922 kb on - strand, within EX31_RS18075 at 176.041 kb on + strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.042 kb on - strand, within EX31_RS18075 at 176.070 kb on - strand, within EX31_RS18075 at 176.194 kb on - strand, within EX31_RS18075 at 176.251 kb on + strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.252 kb on - strand, within EX31_RS18075 at 176.311 kb on - strand at 176.318 kb on - strand at 176.318 kb on - strand at 176.423 kb on + strand at 176.423 kb on + strand at 176.480 kb on - strand at 176.480 kb on - strand at 176.482 kb on + strand at 176.483 kb on - strand at 176.483 kb on - strand at 176.487 kb on - strand at 176.494 kb on + strand at 176.495 kb on - strand at 176.495 kb on - strand at 176.495 kb on - strand at 176.538 kb on + strand at 176.538 kb on + strand at 176.664 kb on + strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.665 kb on - strand at 176.684 kb on - strand at 176.728 kb on + strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.729 kb on - strand, within EX31_RS18080 at 176.749 kb on - strand, within EX31_RS18080 at 176.749 kb on - strand, within EX31_RS18080 at 176.819 kb on + strand, within EX31_RS18080 at 176.820 kb on - strand, within EX31_RS18080 at 176.820 kb on - strand, within EX31_RS18080 at 176.820 kb on - strand, within EX31_RS18080 at 176.842 kb on - strand, within EX31_RS18080 at 176.842 kb on - strand, within EX31_RS18080 at 176.842 kb on - strand, within EX31_RS18080 at 176.904 kb on - strand, within EX31_RS18080 at 176.916 kb on + strand, within EX31_RS18080 at 176.916 kb on + strand, within EX31_RS18080 at 176.916 kb on + strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.917 kb on - strand, within EX31_RS18080 at 176.921 kb on - strand, within EX31_RS18080 at 176.921 kb on - strand, within EX31_RS18080 at 176.921 kb on - strand, within EX31_RS18080 at 176.979 kb on - strand, within EX31_RS18080 at 176.979 kb on - strand, within EX31_RS18080 at 176.979 kb on - strand, within EX31_RS18080 at 177.096 kb on + strand, within EX31_RS18080 at 177.208 kb on - strand, within EX31_RS18080 at 177.208 kb on - strand, within EX31_RS18080 at 177.233 kb on - strand, within EX31_RS18080 at 177.318 kb on - strand, within EX31_RS18080 at 177.337 kb on - strand, within EX31_RS18080 at 177.338 kb on + strand, within EX31_RS18080 at 177.339 kb on - strand, within EX31_RS18080 at 177.360 kb on - strand, within EX31_RS18080 at 177.360 kb on - strand, within EX31_RS18080 at 177.360 kb on - strand, within EX31_RS18080 at 177.625 kb on - strand, within EX31_RS18080 at 177.625 kb on - strand, within EX31_RS18080 at 177.643 kb on - strand, within EX31_RS18080 at 177.643 kb on - strand, within EX31_RS18080 at 177.643 kb on - strand, within EX31_RS18080 at 177.818 kb on - strand, within EX31_RS18080 at 177.967 kb on + strand, within EX31_RS18080 at 177.968 kb on - strand, within EX31_RS18080 at 177.968 kb on - strand, within EX31_RS18080 at 177.968 kb on - strand, within EX31_RS18080 at 178.075 kb on + strand, within EX31_RS18080 at 178.076 kb on - strand, within EX31_RS18080 at 178.076 kb on - strand, within EX31_RS18080 at 178.076 kb on - strand, within EX31_RS18080 at 178.183 kb on - strand, within EX31_RS18080 at 178.404 kb on - strand, within EX31_RS18080 at 178.477 kb on + strand at 178.477 kb on + strand at 178.477 kb on + strand at 178.477 kb on + strand at 178.478 kb on - strand at 178.629 kb on - strand at 178.629 kb on - strand at 178.629 kb on - strand at 178.629 kb on - strand at 178.629 kb on - strand at 178.657 kb on - strand at 178.657 kb on - strand at 178.658 kb on + strand at 178.659 kb on - strand at 178.659 kb on - strand at 178.659 kb on - strand at 178.659 kb on - strand at 178.662 kb on + strand at 178.662 kb on + strand at 178.662 kb on + strand at 178.663 kb on - strand at 178.663 kb on - strand at 178.663 kb on - strand at 178.663 kb on - strand at 178.681 kb on + strand at 178.682 kb on - strand at 178.700 kb on + strand at 178.708 kb on + strand at 178.709 kb on - strand at 178.709 kb on - strand at 178.709 kb on - strand at 178.750 kb on + strand at 178.751 kb on - strand at 178.751 kb on - strand at 178.794 kb on + strand at 178.844 kb on + strand, within EX31_RS18085 at 178.868 kb on + strand, within EX31_RS18085 at 178.869 kb on - strand, within EX31_RS18085 at 179.022 kb on - strand, within EX31_RS18085 at 179.059 kb on + strand, within EX31_RS18085 at 179.060 kb on - strand, within EX31_RS18085 at 179.060 kb on - strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.068 kb on - strand, within EX31_RS18085 at 179.068 kb on - strand, within EX31_RS18085 at 179.071 kb on + strand, within EX31_RS18085 at 179.071 kb on + strand, within EX31_RS18085 at 179.072 kb on - strand, within EX31_RS18085 at 179.072 kb on - strand, within EX31_RS18085 at 179.169 kb on + strand, within EX31_RS18085 at 179.203 kb on + strand, within EX31_RS18085 at 179.203 kb on + strand, within EX31_RS18085 at 179.277 kb on + strand, within EX31_RS18085 at 179.278 kb on - strand, within EX31_RS18085 at 179.352 kb on - strand, within EX31_RS18085 at 179.555 kb on + strand, within EX31_RS18085 at 179.606 kb on + strand, within EX31_RS18085 at 179.606 kb on + strand, within EX31_RS18085 at 179.606 kb on + strand, within EX31_RS18085 at 179.607 kb on - strand, within EX31_RS18085 at 179.607 kb on - strand, within EX31_RS18085
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 175,516 - EX31_RS18075 0.49 -0.2 175,518 + EX31_RS18075 0.49 -0.3 175,618 + EX31_RS18075 0.54 +0.7 175,773 + EX31_RS18075 0.62 -1.7 175,774 - EX31_RS18075 0.62 +0.2 175,774 - EX31_RS18075 0.62 -2.0 175,782 + EX31_RS18075 0.63 +0.5 175,783 - EX31_RS18075 0.63 -1.6 175,787 - EX31_RS18075 0.63 -0.3 175,795 - EX31_RS18075 0.63 +0.1 175,795 - EX31_RS18075 0.63 -0.0 175,876 + EX31_RS18075 0.68 +0.6 175,877 - EX31_RS18075 0.68 -0.6 175,922 - EX31_RS18075 0.70 -2.0 176,041 + EX31_RS18075 0.76 +0.2 176,042 - EX31_RS18075 0.76 -0.1 176,042 - EX31_RS18075 0.76 -0.2 176,042 - EX31_RS18075 0.76 +0.5 176,042 - EX31_RS18075 0.76 -0.7 176,070 - EX31_RS18075 0.78 -0.4 176,194 - EX31_RS18075 0.84 -1.2 176,251 + EX31_RS18075 0.87 -0.5 176,252 - EX31_RS18075 0.87 -0.6 176,252 - EX31_RS18075 0.87 -1.0 176,252 - EX31_RS18075 0.87 +0.1 176,252 - EX31_RS18075 0.87 +0.4 176,252 - EX31_RS18075 0.87 +1.0 176,252 - EX31_RS18075 0.87 -0.1 176,311 - -0.6 176,318 - +1.7 176,318 - +0.4 176,423 + +0.3 176,423 + +1.6 176,480 - +1.6 176,480 - +0.3 176,482 + -0.4 176,483 - +0.3 176,483 - +0.6 176,487 - -0.5 176,494 + -1.6 176,495 - -0.1 176,495 - -0.6 176,495 - +0.6 176,538 + +0.3 176,538 + +0.0 176,664 + +0.1 176,665 - +0.5 176,665 - -0.5 176,665 - +0.5 176,665 - -0.4 176,665 - -0.2 176,665 - +0.0 176,665 - -0.7 176,665 - +0.2 176,665 - +0.3 176,684 - +0.8 176,728 + EX31_RS18080 0.11 +0.6 176,729 - EX31_RS18080 0.11 +0.3 176,729 - EX31_RS18080 0.11 +0.3 176,729 - EX31_RS18080 0.11 +0.1 176,729 - EX31_RS18080 0.11 +0.0 176,729 - EX31_RS18080 0.11 +0.3 176,749 - EX31_RS18080 0.12 +0.3 176,749 - EX31_RS18080 0.12 -1.0 176,819 + EX31_RS18080 0.15 +0.1 176,820 - EX31_RS18080 0.15 -0.4 176,820 - EX31_RS18080 0.15 -0.4 176,820 - EX31_RS18080 0.15 +0.3 176,842 - EX31_RS18080 0.16 +0.2 176,842 - EX31_RS18080 0.16 +0.0 176,842 - EX31_RS18080 0.16 +0.4 176,904 - EX31_RS18080 0.19 +0.9 176,916 + EX31_RS18080 0.20 -1.3 176,916 + EX31_RS18080 0.20 +0.3 176,916 + EX31_RS18080 0.20 -0.1 176,917 - EX31_RS18080 0.20 -0.0 176,917 - EX31_RS18080 0.20 -1.3 176,917 - EX31_RS18080 0.20 +0.8 176,917 - EX31_RS18080 0.20 +0.4 176,917 - EX31_RS18080 0.20 -0.4 176,917 - EX31_RS18080 0.20 +0.3 176,917 - EX31_RS18080 0.20 +0.3 176,917 - EX31_RS18080 0.20 -0.2 176,917 - EX31_RS18080 0.20 -1.8 176,917 - EX31_RS18080 0.20 +1.0 176,921 - EX31_RS18080 0.20 +0.4 176,921 - EX31_RS18080 0.20 +0.0 176,921 - EX31_RS18080 0.20 +0.3 176,979 - EX31_RS18080 0.23 -0.3 176,979 - EX31_RS18080 0.23 +0.5 176,979 - EX31_RS18080 0.23 -0.3 177,096 + EX31_RS18080 0.28 +0.2 177,208 - EX31_RS18080 0.33 +0.4 177,208 - EX31_RS18080 0.33 +0.5 177,233 - EX31_RS18080 0.35 -0.6 177,318 - EX31_RS18080 0.39 +0.7 177,337 - EX31_RS18080 0.39 +0.4 177,338 + EX31_RS18080 0.40 +2.0 177,339 - EX31_RS18080 0.40 +0.1 177,360 - EX31_RS18080 0.41 +0.4 177,360 - EX31_RS18080 0.41 +0.8 177,360 - EX31_RS18080 0.41 +0.6 177,625 - EX31_RS18080 0.53 +0.7 177,625 - EX31_RS18080 0.53 +1.6 177,643 - EX31_RS18080 0.54 -2.3 177,643 - EX31_RS18080 0.54 +0.3 177,643 - EX31_RS18080 0.54 -0.3 177,818 - EX31_RS18080 0.62 -0.2 177,967 + EX31_RS18080 0.69 +0.1 177,968 - EX31_RS18080 0.69 -0.3 177,968 - EX31_RS18080 0.69 -0.2 177,968 - EX31_RS18080 0.69 -1.7 178,075 + EX31_RS18080 0.74 -0.3 178,076 - EX31_RS18080 0.74 -0.5 178,076 - EX31_RS18080 0.74 +0.5 178,076 - EX31_RS18080 0.74 +0.2 178,183 - EX31_RS18080 0.79 +0.1 178,404 - EX31_RS18080 0.90 +0.1 178,477 + +0.8 178,477 + +0.7 178,477 + +0.7 178,477 + +0.5 178,478 - -2.4 178,629 - +0.1 178,629 - -1.5 178,629 - -0.2 178,629 - +0.0 178,629 - +0.1 178,657 - +0.5 178,657 - +1.5 178,658 + +2.1 178,659 - +0.0 178,659 - +1.2 178,659 - -0.3 178,659 - +0.4 178,662 + +0.9 178,662 + -0.3 178,662 + +0.2 178,663 - -0.6 178,663 - -1.1 178,663 - +0.1 178,663 - +0.4 178,681 + +0.3 178,682 - +1.0 178,700 + +0.9 178,708 + +0.3 178,709 - -0.6 178,709 - -0.2 178,709 - -0.0 178,750 + -1.4 178,751 - -1.3 178,751 - -0.6 178,794 + -1.2 178,844 + EX31_RS18085 0.10 +1.7 178,868 + EX31_RS18085 0.12 -0.7 178,869 - EX31_RS18085 0.12 -1.7 179,022 - EX31_RS18085 0.26 -0.4 179,059 + EX31_RS18085 0.30 +0.1 179,060 - EX31_RS18085 0.30 -0.7 179,060 - EX31_RS18085 0.30 -0.2 179,067 + EX31_RS18085 0.30 -1.0 179,067 + EX31_RS18085 0.30 -0.2 179,067 + EX31_RS18085 0.30 -0.2 179,067 + EX31_RS18085 0.30 -0.9 179,067 + EX31_RS18085 0.30 -0.7 179,068 - EX31_RS18085 0.31 +0.2 179,068 - EX31_RS18085 0.31 +0.5 179,071 + EX31_RS18085 0.31 +0.2 179,071 + EX31_RS18085 0.31 +0.3 179,072 - EX31_RS18085 0.31 +0.1 179,072 - EX31_RS18085 0.31 +0.4 179,169 + EX31_RS18085 0.40 -1.3 179,203 + EX31_RS18085 0.43 -0.5 179,203 + EX31_RS18085 0.43 -0.4 179,277 + EX31_RS18085 0.49 -0.5 179,278 - EX31_RS18085 0.50 +1.5 179,352 - EX31_RS18085 0.56 -0.7 179,555 + EX31_RS18085 0.75 -0.2 179,606 + EX31_RS18085 0.79 -1.0 179,606 + EX31_RS18085 0.79 +0.9 179,606 + EX31_RS18085 0.79 -0.2 179,607 - EX31_RS18085 0.79 +0.7 179,607 - EX31_RS18085 0.79 -0.2
Or see this region's nucleotide sequence