Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11430 and EX31_RS11435 are separated by 524 nucleotides EX31_RS11435 and EX31_RS11440 are separated by 3 nucleotides
EX31_RS11430: EX31_RS11430 - SDR family oxidoreductase, at 219,769 to 220,593
_RS11430
EX31_RS11435: EX31_RS11435 - ATP phosphoribosyltransferase, at 221,118 to 222,017
_RS11435
EX31_RS11440: EX31_RS11440 - histidinol dehydrogenase, at 222,021 to 223,334
_RS11440
Position (kb) 221
222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 220.126 kb on + strand, within EX31_RS11430 at 220.126 kb on + strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.141 kb on - strand, within EX31_RS11430 at 220.148 kb on - strand, within EX31_RS11430 at 220.288 kb on - strand, within EX31_RS11430 at 220.332 kb on - strand, within EX31_RS11430 at 220.483 kb on + strand, within EX31_RS11430 at 220.484 kb on - strand, within EX31_RS11430 at 220.484 kb on - strand, within EX31_RS11430 at 220.593 kb on + strand at 220.593 kb on + strand at 220.594 kb on - strand at 220.594 kb on - strand at 220.657 kb on + strand at 220.657 kb on + strand at 220.658 kb on - strand at 220.658 kb on - strand at 220.658 kb on - strand at 220.659 kb on + strand at 220.659 kb on + strand at 220.659 kb on + strand at 220.660 kb on - strand at 220.660 kb on - strand at 220.663 kb on - strand at 220.717 kb on + strand at 220.812 kb on - strand at 220.817 kb on + strand at 220.835 kb on + strand at 220.835 kb on + strand at 220.835 kb on + strand at 220.835 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.873 kb on + strand at 220.874 kb on - strand at 220.874 kb on - strand at 220.874 kb on - strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.875 kb on + strand at 220.876 kb on - strand at 220.885 kb on + strand at 220.885 kb on + strand at 220.885 kb on + strand at 220.885 kb on + strand at 220.886 kb on - strand at 220.886 kb on - strand at 221.009 kb on + strand at 221.009 kb on + strand at 221.009 kb on + strand at 221.096 kb on + strand at 221.096 kb on + strand at 221.096 kb on + strand at 221.097 kb on - strand at 221.097 kb on - strand at 221.097 kb on - strand at 221.395 kb on - strand, within EX31_RS11435 at 221.463 kb on + strand, within EX31_RS11435 at 221.464 kb on - strand, within EX31_RS11435 at 221.529 kb on + strand, within EX31_RS11435 at 221.529 kb on + strand, within EX31_RS11435 at 221.766 kb on - strand, within EX31_RS11435 at 221.799 kb on + strand, within EX31_RS11435 at 221.799 kb on + strand, within EX31_RS11435 at 221.799 kb on + strand, within EX31_RS11435 at 221.799 kb on + strand, within EX31_RS11435 at 221.799 kb on + strand, within EX31_RS11435 at 221.799 kb on + strand, within EX31_RS11435 at 221.800 kb on - strand, within EX31_RS11435 at 221.800 kb on - strand, within EX31_RS11435 at 221.800 kb on - strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.804 kb on + strand, within EX31_RS11435 at 221.805 kb on - strand, within EX31_RS11435 at 221.805 kb on - strand, within EX31_RS11435 at 222.015 kb on + strand at 222.015 kb on + strand at 222.206 kb on + strand, within EX31_RS11440 at 222.268 kb on + strand, within EX31_RS11440 at 222.281 kb on + strand, within EX31_RS11440 at 222.317 kb on + strand, within EX31_RS11440 at 222.373 kb on + strand, within EX31_RS11440 at 222.398 kb on + strand, within EX31_RS11440 at 222.417 kb on + strand, within EX31_RS11440 at 222.419 kb on + strand, within EX31_RS11440 at 222.420 kb on - strand, within EX31_RS11440 at 222.454 kb on + strand, within EX31_RS11440 at 222.455 kb on - strand, within EX31_RS11440 at 222.457 kb on + strand, within EX31_RS11440 at 222.458 kb on - strand, within EX31_RS11440 at 222.458 kb on - strand, within EX31_RS11440 at 222.540 kb on + strand, within EX31_RS11440 at 222.574 kb on - strand, within EX31_RS11440 at 222.574 kb on - strand, within EX31_RS11440 at 222.666 kb on + strand, within EX31_RS11440 at 222.667 kb on - strand, within EX31_RS11440 at 222.667 kb on - strand, within EX31_RS11440 at 222.667 kb on - strand, within EX31_RS11440 at 222.667 kb on - strand, within EX31_RS11440 at 222.977 kb on + strand, within EX31_RS11440 at 222.977 kb on + strand, within EX31_RS11440
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 220,126 + EX31_RS11430 0.43 -1.0 220,126 + EX31_RS11430 0.43 +1.2 220,141 - EX31_RS11430 0.45 -1.0 220,141 - EX31_RS11430 0.45 +0.9 220,141 - EX31_RS11430 0.45 +0.2 220,141 - EX31_RS11430 0.45 +0.2 220,148 - EX31_RS11430 0.46 +0.7 220,288 - EX31_RS11430 0.63 -0.7 220,332 - EX31_RS11430 0.68 -0.4 220,483 + EX31_RS11430 0.87 +0.7 220,484 - EX31_RS11430 0.87 +1.2 220,484 - EX31_RS11430 0.87 -0.9 220,593 + -0.2 220,593 + -1.2 220,594 - +1.2 220,594 - +1.6 220,657 + -0.3 220,657 + -0.0 220,658 - -0.2 220,658 - -0.9 220,658 - +0.0 220,659 + -0.2 220,659 + -0.6 220,659 + -0.7 220,660 - -0.5 220,660 - -0.1 220,663 - +0.7 220,717 + +0.3 220,812 - -1.9 220,817 + +0.1 220,835 + +0.4 220,835 + +0.2 220,835 + -0.1 220,835 + +0.0 220,873 + -0.1 220,873 + +0.1 220,873 + -0.8 220,873 + +0.2 220,873 + +0.0 220,873 + +0.2 220,874 - +0.8 220,874 - -0.2 220,874 - -0.1 220,875 + -0.2 220,875 + -0.6 220,875 + -0.5 220,875 + -0.6 220,875 + -0.2 220,875 + -0.1 220,875 + -0.0 220,875 + +0.3 220,875 + -0.2 220,875 + +1.0 220,875 + -0.3 220,875 + +0.2 220,875 + +0.2 220,875 + +0.1 220,875 + -2.3 220,875 + +0.4 220,876 - -0.3 220,885 + +0.7 220,885 + -0.3 220,885 + -0.7 220,885 + -0.7 220,886 - +2.6 220,886 - -1.1 221,009 + -0.3 221,009 + +0.3 221,009 + +0.8 221,096 + -0.2 221,096 + -0.4 221,096 + +0.1 221,097 - -0.7 221,097 - +0.3 221,097 - +0.4 221,395 - EX31_RS11435 0.31 -0.7 221,463 + EX31_RS11435 0.38 +0.2 221,464 - EX31_RS11435 0.38 +1.0 221,529 + EX31_RS11435 0.46 +0.2 221,529 + EX31_RS11435 0.46 +0.2 221,766 - EX31_RS11435 0.72 -0.9 221,799 + EX31_RS11435 0.76 -2.1 221,799 + EX31_RS11435 0.76 -0.8 221,799 + EX31_RS11435 0.76 -0.9 221,799 + EX31_RS11435 0.76 -0.8 221,799 + EX31_RS11435 0.76 -0.3 221,799 + EX31_RS11435 0.76 +0.8 221,800 - EX31_RS11435 0.76 -1.7 221,800 - EX31_RS11435 0.76 -2.6 221,800 - EX31_RS11435 0.76 +0.0 221,804 + EX31_RS11435 0.76 -0.4 221,804 + EX31_RS11435 0.76 -0.7 221,804 + EX31_RS11435 0.76 +0.3 221,804 + EX31_RS11435 0.76 -0.2 221,804 + EX31_RS11435 0.76 +1.3 221,804 + EX31_RS11435 0.76 +0.0 221,804 + EX31_RS11435 0.76 -0.5 221,804 + EX31_RS11435 0.76 -0.2 221,805 - EX31_RS11435 0.76 +0.5 221,805 - EX31_RS11435 0.76 +1.5 222,015 + -0.2 222,015 + +0.2 222,206 + EX31_RS11440 0.14 -0.1 222,268 + EX31_RS11440 0.19 -1.0 222,281 + EX31_RS11440 0.20 +0.5 222,317 + EX31_RS11440 0.23 -0.8 222,373 + EX31_RS11440 0.27 +0.2 222,398 + EX31_RS11440 0.29 -0.4 222,417 + EX31_RS11440 0.30 -0.2 222,419 + EX31_RS11440 0.30 -0.3 222,420 - EX31_RS11440 0.30 -0.4 222,454 + EX31_RS11440 0.33 -0.6 222,455 - EX31_RS11440 0.33 +0.3 222,457 + EX31_RS11440 0.33 -0.9 222,458 - EX31_RS11440 0.33 +1.6 222,458 - EX31_RS11440 0.33 +0.1 222,540 + EX31_RS11440 0.39 -0.8 222,574 - EX31_RS11440 0.42 -0.6 222,574 - EX31_RS11440 0.42 -0.4 222,666 + EX31_RS11440 0.49 +0.2 222,667 - EX31_RS11440 0.49 +0.1 222,667 - EX31_RS11440 0.49 +0.4 222,667 - EX31_RS11440 0.49 +0.2 222,667 - EX31_RS11440 0.49 -0.7 222,977 + EX31_RS11440 0.73 -0.4 222,977 + EX31_RS11440 0.73 -0.2
Or see this region's nucleotide sequence