Strain Fitness in Rahnella sp. WP5 around EX31_RS04265

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04260 and EX31_RS04265 are separated by 334 nucleotidesEX31_RS04265 and EX31_RS04270 are separated by 66 nucleotides EX31_RS04260: EX31_RS04260 - McrC family protein, at 379,331 to 380,605 _RS04260 EX31_RS04265: EX31_RS04265 - hypothetical protein, at 380,940 to 381,161 _RS04265 EX31_RS04270: EX31_RS04270 - porin, at 381,228 to 382,354 _RS04270 Position (kb) 380 381 382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 379.945 kb on + strand, within EX31_RS04260at 379.959 kb on + strand, within EX31_RS04260at 380.011 kb on + strand, within EX31_RS04260at 380.012 kb on - strand, within EX31_RS04260at 380.058 kb on - strand, within EX31_RS04260at 380.058 kb on - strand, within EX31_RS04260at 380.058 kb on - strand, within EX31_RS04260at 380.068 kb on + strand, within EX31_RS04260at 380.069 kb on - strand, within EX31_RS04260at 380.069 kb on - strand, within EX31_RS04260at 380.088 kb on + strand, within EX31_RS04260at 380.089 kb on - strand, within EX31_RS04260at 380.091 kb on + strand, within EX31_RS04260at 380.091 kb on + strand, within EX31_RS04260at 380.092 kb on - strand, within EX31_RS04260at 380.092 kb on - strand, within EX31_RS04260at 380.101 kb on + strand, within EX31_RS04260at 380.101 kb on + strand, within EX31_RS04260at 380.101 kb on + strand, within EX31_RS04260at 380.101 kb on + strand, within EX31_RS04260at 380.102 kb on - strand, within EX31_RS04260at 380.102 kb on - strand, within EX31_RS04260at 380.102 kb on - strand, within EX31_RS04260at 380.102 kb on - strand, within EX31_RS04260at 380.102 kb on - strand, within EX31_RS04260at 380.102 kb on - strand, within EX31_RS04260at 380.102 kb on - strand, within EX31_RS04260at 380.108 kb on - strand, within EX31_RS04260at 380.174 kb on + strand, within EX31_RS04260at 380.175 kb on - strand, within EX31_RS04260at 380.175 kb on - strand, within EX31_RS04260at 380.191 kb on + strand, within EX31_RS04260at 380.192 kb on - strand, within EX31_RS04260at 380.209 kb on + strand, within EX31_RS04260at 380.209 kb on + strand, within EX31_RS04260at 380.210 kb on - strand, within EX31_RS04260at 380.210 kb on - strand, within EX31_RS04260at 380.217 kb on + strand, within EX31_RS04260at 380.217 kb on + strand, within EX31_RS04260at 380.218 kb on - strand, within EX31_RS04260at 380.218 kb on - strand, within EX31_RS04260at 380.218 kb on - strand, within EX31_RS04260at 380.218 kb on - strand, within EX31_RS04260at 380.239 kb on + strand, within EX31_RS04260at 380.239 kb on + strand, within EX31_RS04260at 380.239 kb on + strand, within EX31_RS04260at 380.239 kb on + strand, within EX31_RS04260at 380.239 kb on + strand, within EX31_RS04260at 380.239 kb on + strand, within EX31_RS04260at 380.240 kb on - strand, within EX31_RS04260at 380.240 kb on - strand, within EX31_RS04260at 380.240 kb on - strand, within EX31_RS04260at 380.240 kb on - strand, within EX31_RS04260at 380.240 kb on - strand, within EX31_RS04260at 380.243 kb on + strand, within EX31_RS04260at 380.243 kb on + strand, within EX31_RS04260at 380.244 kb on - strand, within EX31_RS04260at 380.259 kb on + strand, within EX31_RS04260at 380.260 kb on - strand, within EX31_RS04260at 380.260 kb on - strand, within EX31_RS04260at 380.281 kb on - strand, within EX31_RS04260at 380.329 kb on + strand, within EX31_RS04260at 380.330 kb on - strand, within EX31_RS04260at 380.359 kb on + strand, within EX31_RS04260at 380.360 kb on - strand, within EX31_RS04260at 380.369 kb on - strand, within EX31_RS04260at 380.369 kb on - strand, within EX31_RS04260at 380.372 kb on + strand, within EX31_RS04260at 380.372 kb on + strand, within EX31_RS04260at 380.419 kb on + strand, within EX31_RS04260at 380.419 kb on + strand, within EX31_RS04260at 380.423 kb on + strand, within EX31_RS04260at 380.424 kb on - strand, within EX31_RS04260at 380.424 kb on - strand, within EX31_RS04260at 380.424 kb on - strand, within EX31_RS04260at 380.424 kb on - strand, within EX31_RS04260at 380.424 kb on - strand, within EX31_RS04260at 380.427 kb on + strand, within EX31_RS04260at 380.456 kb on + strand, within EX31_RS04260at 380.457 kb on - strand, within EX31_RS04260at 380.503 kb on + strandat 380.504 kb on - strandat 380.504 kb on - strandat 380.559 kb on + strandat 380.560 kb on - strandat 380.584 kb on - strandat 380.584 kb on - strandat 380.603 kb on + strandat 380.614 kb on - strandat 380.670 kb on - strandat 380.670 kb on - strandat 380.688 kb on + strandat 380.689 kb on - strandat 380.689 kb on - strandat 380.691 kb on + strandat 380.691 kb on + strandat 380.729 kb on + strandat 380.807 kb on - strandat 380.807 kb on - strandat 380.880 kb on - strandat 380.893 kb on + strandat 380.911 kb on + strandat 380.912 kb on - strandat 380.912 kb on - strandat 380.912 kb on - strandat 380.933 kb on - strandat 380.933 kb on - strandat 380.952 kb on + strandat 381.009 kb on + strand, within EX31_RS04265at 381.009 kb on + strand, within EX31_RS04265at 381.010 kb on - strand, within EX31_RS04265at 381.010 kb on - strand, within EX31_RS04265at 381.057 kb on + strand, within EX31_RS04265at 381.057 kb on + strand, within EX31_RS04265at 381.057 kb on + strand, within EX31_RS04265at 381.057 kb on + strand, within EX31_RS04265at 381.057 kb on + strand, within EX31_RS04265at 381.057 kb on + strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.058 kb on - strand, within EX31_RS04265at 381.059 kb on + strand, within EX31_RS04265at 381.087 kb on + strand, within EX31_RS04265at 381.088 kb on - strand, within EX31_RS04265at 381.088 kb on - strand, within EX31_RS04265at 381.230 kb on - strandat 381.230 kb on - strandat 381.230 kb on - strandat 381.289 kb on - strandat 381.304 kb on + strandat 381.305 kb on - strandat 381.347 kb on - strand, within EX31_RS04270at 381.364 kb on + strand, within EX31_RS04270at 381.365 kb on - strand, within EX31_RS04270at 381.406 kb on + strand, within EX31_RS04270at 381.406 kb on + strand, within EX31_RS04270at 381.406 kb on + strand, within EX31_RS04270at 381.407 kb on - strand, within EX31_RS04270at 381.443 kb on + strand, within EX31_RS04270at 381.443 kb on + strand, within EX31_RS04270at 381.449 kb on + strand, within EX31_RS04270at 381.449 kb on + strand, within EX31_RS04270at 381.449 kb on + strand, within EX31_RS04270at 381.452 kb on - strand, within EX31_RS04270at 381.494 kb on - strand, within EX31_RS04270at 381.494 kb on - strand, within EX31_RS04270at 381.538 kb on + strand, within EX31_RS04270at 381.538 kb on + strand, within EX31_RS04270at 381.538 kb on + strand, within EX31_RS04270at 381.538 kb on + strand, within EX31_RS04270at 381.538 kb on + strand, within EX31_RS04270at 381.539 kb on - strand, within EX31_RS04270at 381.539 kb on - strand, within EX31_RS04270at 381.542 kb on - strand, within EX31_RS04270at 381.542 kb on - strand, within EX31_RS04270at 381.542 kb on - strand, within EX31_RS04270at 381.562 kb on + strand, within EX31_RS04270at 381.562 kb on + strand, within EX31_RS04270at 381.563 kb on - strand, within EX31_RS04270at 381.563 kb on - strand, within EX31_RS04270at 381.563 kb on - strand, within EX31_RS04270at 381.563 kb on - strand, within EX31_RS04270at 381.626 kb on + strand, within EX31_RS04270at 381.627 kb on - strand, within EX31_RS04270at 381.628 kb on + strand, within EX31_RS04270at 381.628 kb on + strand, within EX31_RS04270at 381.629 kb on - strand, within EX31_RS04270at 381.629 kb on - strand, within EX31_RS04270at 381.636 kb on - strand, within EX31_RS04270at 381.665 kb on - strand, within EX31_RS04270at 381.699 kb on - strand, within EX31_RS04270at 381.700 kb on + strand, within EX31_RS04270at 381.701 kb on - strand, within EX31_RS04270at 381.725 kb on + strand, within EX31_RS04270at 381.726 kb on - strand, within EX31_RS04270at 381.781 kb on + strand, within EX31_RS04270at 381.782 kb on - strand, within EX31_RS04270at 381.782 kb on - strand, within EX31_RS04270at 381.782 kb on - strand, within EX31_RS04270at 381.782 kb on - strand, within EX31_RS04270at 381.791 kb on - strand, within EX31_RS04270at 381.791 kb on - strand, within EX31_RS04270at 381.792 kb on + strand, within EX31_RS04270at 381.793 kb on - strand, within EX31_RS04270at 381.793 kb on - strand, within EX31_RS04270at 381.820 kb on + strand, within EX31_RS04270at 381.830 kb on + strand, within EX31_RS04270at 381.842 kb on + strand, within EX31_RS04270at 381.856 kb on + strand, within EX31_RS04270at 381.857 kb on - strand, within EX31_RS04270at 381.857 kb on - strand, within EX31_RS04270at 381.870 kb on - strand, within EX31_RS04270at 381.938 kb on - strand, within EX31_RS04270at 381.940 kb on + strand, within EX31_RS04270at 381.962 kb on - strand, within EX31_RS04270at 382.000 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.002 kb on + strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.003 kb on - strand, within EX31_RS04270at 382.016 kb on + strand, within EX31_RS04270at 382.087 kb on + strand, within EX31_RS04270at 382.087 kb on + strand, within EX31_RS04270at 382.087 kb on + strand, within EX31_RS04270at 382.088 kb on - strand, within EX31_RS04270at 382.090 kb on + strand, within EX31_RS04270at 382.091 kb on - strand, within EX31_RS04270at 382.091 kb on - strand, within EX31_RS04270at 382.121 kb on + strand, within EX31_RS04270at 382.121 kb on + strand, within EX31_RS04270at 382.122 kb on - strand, within EX31_RS04270at 382.122 kb on - strand, within EX31_RS04270at 382.123 kb on + strand, within EX31_RS04270

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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379,945 + EX31_RS04260 0.48 +0.2
379,959 + EX31_RS04260 0.49 +0.3
380,011 + EX31_RS04260 0.53 +0.1
380,012 - EX31_RS04260 0.53 -0.1
380,058 - EX31_RS04260 0.57 +0.1
380,058 - EX31_RS04260 0.57 +0.3
380,058 - EX31_RS04260 0.57 +0.4
380,068 + EX31_RS04260 0.58 +0.0
380,069 - EX31_RS04260 0.58 +0.2
380,069 - EX31_RS04260 0.58 -0.1
380,088 + EX31_RS04260 0.59 -0.1
380,089 - EX31_RS04260 0.59 +0.5
380,091 + EX31_RS04260 0.60 -1.2
380,091 + EX31_RS04260 0.60 +0.6
380,092 - EX31_RS04260 0.60 +1.3
380,092 - EX31_RS04260 0.60 +1.3
380,101 + EX31_RS04260 0.60 -0.9
380,101 + EX31_RS04260 0.60 +0.1
380,101 + EX31_RS04260 0.60 -0.6
380,101 + EX31_RS04260 0.60 -1.0
380,102 - EX31_RS04260 0.60 -0.6
380,102 - EX31_RS04260 0.60 -0.5
380,102 - EX31_RS04260 0.60 +0.3
380,102 - EX31_RS04260 0.60 +0.1
380,102 - EX31_RS04260 0.60 -0.0
380,102 - EX31_RS04260 0.60 +1.4
380,102 - EX31_RS04260 0.60 +0.2
380,108 - EX31_RS04260 0.61 +0.1
380,174 + EX31_RS04260 0.66 -0.9
380,175 - EX31_RS04260 0.66 +0.2
380,175 - EX31_RS04260 0.66 +0.7
380,191 + EX31_RS04260 0.67 -0.0
380,192 - EX31_RS04260 0.68 +1.1
380,209 + EX31_RS04260 0.69 -0.3
380,209 + EX31_RS04260 0.69 -0.1
380,210 - EX31_RS04260 0.69 +0.2
380,210 - EX31_RS04260 0.69 -1.4
380,217 + EX31_RS04260 0.69 -0.3
380,217 + EX31_RS04260 0.69 -0.4
380,218 - EX31_RS04260 0.70 -0.9
380,218 - EX31_RS04260 0.70 +0.4
380,218 - EX31_RS04260 0.70 -0.6
380,218 - EX31_RS04260 0.70 +0.1
380,239 + EX31_RS04260 0.71 +1.2
380,239 + EX31_RS04260 0.71 -1.2
380,239 + EX31_RS04260 0.71 +0.4
380,239 + EX31_RS04260 0.71 +0.3
380,239 + EX31_RS04260 0.71 +0.5
380,239 + EX31_RS04260 0.71 -0.1
380,240 - EX31_RS04260 0.71 -0.0
380,240 - EX31_RS04260 0.71 +0.7
380,240 - EX31_RS04260 0.71 +0.3
380,240 - EX31_RS04260 0.71 -0.4
380,240 - EX31_RS04260 0.71 +1.0
380,243 + EX31_RS04260 0.72 -0.0
380,243 + EX31_RS04260 0.72 +0.3
380,244 - EX31_RS04260 0.72 +0.9
380,259 + EX31_RS04260 0.73 +0.4
380,260 - EX31_RS04260 0.73 -0.2
380,260 - EX31_RS04260 0.73 -1.2
380,281 - EX31_RS04260 0.75 +1.0
380,329 + EX31_RS04260 0.78 -0.1
380,330 - EX31_RS04260 0.78 -0.8
380,359 + EX31_RS04260 0.81 +0.5
380,360 - EX31_RS04260 0.81 +1.3
380,369 - EX31_RS04260 0.81 -2.7
380,369 - EX31_RS04260 0.81 +0.7
380,372 + EX31_RS04260 0.82 +0.6
380,372 + EX31_RS04260 0.82 +0.0
380,419 + EX31_RS04260 0.85 +0.3
380,419 + EX31_RS04260 0.85 -2.4
380,423 + EX31_RS04260 0.86 -0.1
380,424 - EX31_RS04260 0.86 -0.1
380,424 - EX31_RS04260 0.86 +0.5
380,424 - EX31_RS04260 0.86 +0.6
380,424 - EX31_RS04260 0.86 +0.9
380,424 - EX31_RS04260 0.86 -1.3
380,427 + EX31_RS04260 0.86 -0.3
380,456 + EX31_RS04260 0.88 -0.6
380,457 - EX31_RS04260 0.88 -0.4
380,503 + -0.6
380,504 - -0.3
380,504 - +0.2
380,559 + -1.3
380,560 - -1.1
380,584 - -0.3
380,584 - +0.3
380,603 + +0.3
380,614 - -0.1
380,670 - +0.4
380,670 - +1.0
380,688 + -0.3
380,689 - -0.6
380,689 - -1.1
380,691 + +0.1
380,691 + +0.3
380,729 + -0.4
380,807 - -0.3
380,807 - -0.8
380,880 - +0.7
380,893 + -0.8
380,911 + -0.3
380,912 - -1.3
380,912 - +0.8
380,912 - -0.3
380,933 - +0.0
380,933 - +0.5
380,952 + -1.0
381,009 + EX31_RS04265 0.31 -0.5
381,009 + EX31_RS04265 0.31 -0.6
381,010 - EX31_RS04265 0.32 +0.3
381,010 - EX31_RS04265 0.32 -1.1
381,057 + EX31_RS04265 0.53 -1.1
381,057 + EX31_RS04265 0.53 -0.4
381,057 + EX31_RS04265 0.53 +0.3
381,057 + EX31_RS04265 0.53 +0.1
381,057 + EX31_RS04265 0.53 +0.2
381,057 + EX31_RS04265 0.53 -0.1
381,058 - EX31_RS04265 0.53 -0.8
381,058 - EX31_RS04265 0.53 +0.3
381,058 - EX31_RS04265 0.53 -0.7
381,058 - EX31_RS04265 0.53 +0.6
381,058 - EX31_RS04265 0.53 -0.2
381,058 - EX31_RS04265 0.53 +0.3
381,058 - EX31_RS04265 0.53 +0.2
381,058 - EX31_RS04265 0.53 +0.6
381,058 - EX31_RS04265 0.53 +0.3
381,058 - EX31_RS04265 0.53 +0.3
381,059 + EX31_RS04265 0.54 -0.3
381,087 + EX31_RS04265 0.66 +1.3
381,088 - EX31_RS04265 0.67 -1.2
381,088 - EX31_RS04265 0.67 -0.4
381,230 - +0.7
381,230 - -3.2
381,230 - +0.7
381,289 - +0.4
381,304 + -0.0
381,305 - -0.1
381,347 - EX31_RS04270 0.11 -0.3
381,364 + EX31_RS04270 0.12 -0.5
381,365 - EX31_RS04270 0.12 +0.1
381,406 + EX31_RS04270 0.16 -0.2
381,406 + EX31_RS04270 0.16 +0.4
381,406 + EX31_RS04270 0.16 -0.7
381,407 - EX31_RS04270 0.16 -1.2
381,443 + EX31_RS04270 0.19 -1.3
381,443 + EX31_RS04270 0.19 +1.5
381,449 + EX31_RS04270 0.20 -1.9
381,449 + EX31_RS04270 0.20 -0.6
381,449 + EX31_RS04270 0.20 +0.1
381,452 - EX31_RS04270 0.20 +0.7
381,494 - EX31_RS04270 0.24 +0.4
381,494 - EX31_RS04270 0.24 -0.2
381,538 + EX31_RS04270 0.28 +1.0
381,538 + EX31_RS04270 0.28 +0.1
381,538 + EX31_RS04270 0.28 -0.8
381,538 + EX31_RS04270 0.28 -0.2
381,538 + EX31_RS04270 0.28 +0.1
381,539 - EX31_RS04270 0.28 +1.7
381,539 - EX31_RS04270 0.28 +0.2
381,542 - EX31_RS04270 0.28 +0.2
381,542 - EX31_RS04270 0.28 -0.2
381,542 - EX31_RS04270 0.28 -0.2
381,562 + EX31_RS04270 0.30 -0.2
381,562 + EX31_RS04270 0.30 +0.3
381,563 - EX31_RS04270 0.30 +0.5
381,563 - EX31_RS04270 0.30 +0.4
381,563 - EX31_RS04270 0.30 -0.1
381,563 - EX31_RS04270 0.30 -0.7
381,626 + EX31_RS04270 0.35 -0.4
381,627 - EX31_RS04270 0.35 +0.2
381,628 + EX31_RS04270 0.35 +1.0
381,628 + EX31_RS04270 0.35 -0.4
381,629 - EX31_RS04270 0.36 +0.1
381,629 - EX31_RS04270 0.36 +2.4
381,636 - EX31_RS04270 0.36 -0.3
381,665 - EX31_RS04270 0.39 +0.4
381,699 - EX31_RS04270 0.42 +0.4
381,700 + EX31_RS04270 0.42 -0.9
381,701 - EX31_RS04270 0.42 +0.0
381,725 + EX31_RS04270 0.44 +1.1
381,726 - EX31_RS04270 0.44 +2.1
381,781 + EX31_RS04270 0.49 +0.3
381,782 - EX31_RS04270 0.49 +0.5
381,782 - EX31_RS04270 0.49 +1.5
381,782 - EX31_RS04270 0.49 -0.8
381,782 - EX31_RS04270 0.49 -0.0
381,791 - EX31_RS04270 0.50 -0.1
381,791 - EX31_RS04270 0.50 +1.0
381,792 + EX31_RS04270 0.50 -1.3
381,793 - EX31_RS04270 0.50 -0.8
381,793 - EX31_RS04270 0.50 +0.3
381,820 + EX31_RS04270 0.53 +0.4
381,830 + EX31_RS04270 0.53 -1.4
381,842 + EX31_RS04270 0.54 +0.2
381,856 + EX31_RS04270 0.56 +0.5
381,857 - EX31_RS04270 0.56 +0.1
381,857 - EX31_RS04270 0.56 +1.3
381,870 - EX31_RS04270 0.57 -0.6
381,938 - EX31_RS04270 0.63 -0.1
381,940 + EX31_RS04270 0.63 -1.2
381,962 - EX31_RS04270 0.65 +0.7
382,000 + EX31_RS04270 0.69 -0.5
382,002 + EX31_RS04270 0.69 +0.4
382,002 + EX31_RS04270 0.69 +0.3
382,002 + EX31_RS04270 0.69 +0.3
382,002 + EX31_RS04270 0.69 +1.5
382,003 - EX31_RS04270 0.69 +1.3
382,003 - EX31_RS04270 0.69 +0.1
382,003 - EX31_RS04270 0.69 +0.2
382,003 - EX31_RS04270 0.69 +0.2
382,003 - EX31_RS04270 0.69 -0.3
382,016 + EX31_RS04270 0.70 +0.5
382,087 + EX31_RS04270 0.76 -0.5
382,087 + EX31_RS04270 0.76 -0.4
382,087 + EX31_RS04270 0.76 -0.9
382,088 - EX31_RS04270 0.76 +1.0
382,090 + EX31_RS04270 0.76 +0.2
382,091 - EX31_RS04270 0.77 +0.1
382,091 - EX31_RS04270 0.77 +0.9
382,121 + EX31_RS04270 0.79 -0.5
382,121 + EX31_RS04270 0.79 +0.5
382,122 - EX31_RS04270 0.79 -0.2
382,122 - EX31_RS04270 0.79 -0.2
382,123 + EX31_RS04270 0.79 -0.9

Or see this region's nucleotide sequence