Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01860 and EX31_RS01865 overlap by 4 nucleotides EX31_RS01865 and EX31_RS01870 are separated by 3 nucleotides EX31_RS01870 and EX31_RS01875 are separated by 32 nucleotides EX31_RS01875 and EX31_RS01880 are separated by 162 nucleotides
EX31_RS01860: EX31_RS01860 - type VI secretion system baseplate subunit TssK, at 402,192 to 403,529
_RS01860
EX31_RS01865: EX31_RS01865 - DotU family type IV/VI secretion system protein, at 403,526 to 404,179
_RS01865
EX31_RS01870: EX31_RS01870 - OmpA family protein, at 404,183 to 405,877
_RS01870
EX31_RS01875: EX31_RS01875 - Hcp family type VI secretion system effector, at 405,910 to 406,401
_RS01875
EX31_RS01880: EX31_RS01880 - type VI secretion system ATPase TssH, at 406,564 to 409,221
_RS01880
Position (kb) 404
405
406 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.370 kb on - strand, within EX31_RS01860 at 403.471 kb on - strand at 403.471 kb on - strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.507 kb on + strand at 403.699 kb on + strand, within EX31_RS01865 at 403.700 kb on - strand, within EX31_RS01865 at 403.700 kb on - strand, within EX31_RS01865 at 403.719 kb on - strand, within EX31_RS01865 at 403.721 kb on - strand, within EX31_RS01865 at 403.721 kb on - strand, within EX31_RS01865 at 403.735 kb on - strand, within EX31_RS01865 at 403.737 kb on + strand, within EX31_RS01865 at 403.737 kb on + strand, within EX31_RS01865 at 403.749 kb on + strand, within EX31_RS01865 at 403.750 kb on - strand, within EX31_RS01865 at 403.753 kb on + strand, within EX31_RS01865 at 403.754 kb on - strand, within EX31_RS01865 at 403.814 kb on + strand, within EX31_RS01865 at 403.856 kb on - strand, within EX31_RS01865 at 403.910 kb on + strand, within EX31_RS01865 at 403.989 kb on + strand, within EX31_RS01865 at 403.990 kb on - strand, within EX31_RS01865 at 404.130 kb on + strand at 404.130 kb on + strand at 404.135 kb on - strand at 404.135 kb on - strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.149 kb on + strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.150 kb on - strand at 404.194 kb on - strand at 404.202 kb on + strand at 404.203 kb on - strand at 404.203 kb on - strand at 404.205 kb on + strand at 404.318 kb on - strand at 404.339 kb on - strand at 404.363 kb on + strand, within EX31_RS01870 at 404.364 kb on - strand, within EX31_RS01870 at 404.371 kb on + strand, within EX31_RS01870 at 404.372 kb on - strand, within EX31_RS01870 at 404.372 kb on - strand, within EX31_RS01870 at 404.489 kb on + strand, within EX31_RS01870 at 404.611 kb on + strand, within EX31_RS01870 at 404.756 kb on - strand, within EX31_RS01870 at 404.774 kb on - strand, within EX31_RS01870 at 404.812 kb on - strand, within EX31_RS01870 at 404.842 kb on + strand, within EX31_RS01870 at 405.030 kb on + strand, within EX31_RS01870 at 405.030 kb on + strand, within EX31_RS01870 at 405.030 kb on + strand, within EX31_RS01870 at 405.031 kb on - strand, within EX31_RS01870 at 405.031 kb on - strand, within EX31_RS01870 at 405.043 kb on + strand, within EX31_RS01870 at 405.107 kb on + strand, within EX31_RS01870 at 405.168 kb on + strand, within EX31_RS01870 at 405.169 kb on - strand, within EX31_RS01870 at 405.229 kb on - strand, within EX31_RS01870 at 405.255 kb on + strand, within EX31_RS01870 at 405.255 kb on + strand, within EX31_RS01870 at 405.255 kb on + strand, within EX31_RS01870 at 405.255 kb on + strand, within EX31_RS01870 at 405.256 kb on - strand, within EX31_RS01870 at 405.256 kb on - strand, within EX31_RS01870 at 405.257 kb on + strand, within EX31_RS01870 at 405.257 kb on + strand, within EX31_RS01870 at 405.257 kb on + strand, within EX31_RS01870 at 405.258 kb on - strand, within EX31_RS01870 at 405.259 kb on + strand, within EX31_RS01870 at 405.312 kb on + strand, within EX31_RS01870 at 405.367 kb on + strand, within EX31_RS01870 at 405.367 kb on + strand, within EX31_RS01870 at 405.367 kb on + strand, within EX31_RS01870 at 405.368 kb on - strand, within EX31_RS01870 at 405.368 kb on - strand, within EX31_RS01870 at 405.381 kb on + strand, within EX31_RS01870 at 405.381 kb on + strand, within EX31_RS01870 at 405.381 kb on + strand, within EX31_RS01870 at 405.381 kb on + strand, within EX31_RS01870 at 405.382 kb on - strand, within EX31_RS01870 at 405.382 kb on - strand, within EX31_RS01870 at 405.382 kb on - strand, within EX31_RS01870 at 405.382 kb on - strand, within EX31_RS01870 at 405.383 kb on + strand, within EX31_RS01870 at 405.383 kb on + strand, within EX31_RS01870 at 405.428 kb on - strand, within EX31_RS01870 at 405.498 kb on + strand, within EX31_RS01870 at 405.606 kb on + strand, within EX31_RS01870 at 405.643 kb on + strand, within EX31_RS01870 at 405.643 kb on + strand, within EX31_RS01870 at 405.684 kb on + strand, within EX31_RS01870 at 405.744 kb on - strand at 405.905 kb on + strand at 405.905 kb on + strand at 405.959 kb on + strand at 406.028 kb on - strand, within EX31_RS01875 at 406.028 kb on - strand, within EX31_RS01875 at 406.028 kb on - strand, within EX31_RS01875 at 406.071 kb on + strand, within EX31_RS01875 at 406.120 kb on + strand, within EX31_RS01875 at 406.121 kb on - strand, within EX31_RS01875 at 406.211 kb on - strand, within EX31_RS01875 at 406.211 kb on - strand, within EX31_RS01875 at 406.311 kb on + strand, within EX31_RS01875 at 406.311 kb on + strand, within EX31_RS01875 at 406.345 kb on + strand, within EX31_RS01875 at 406.345 kb on + strand, within EX31_RS01875 at 406.345 kb on + strand, within EX31_RS01875 at 406.389 kb on + strand at 406.389 kb on + strand at 406.390 kb on - strand at 406.390 kb on - strand at 406.390 kb on - strand at 406.390 kb on - strand at 406.407 kb on + strand at 406.543 kb on + strand at 406.543 kb on + strand at 406.543 kb on + strand at 406.544 kb on - strand at 406.547 kb on + strand at 406.560 kb on + strand at 406.560 kb on + strand at 406.587 kb on - strand at 406.599 kb on - strand at 406.805 kb on + strand at 406.805 kb on + strand at 406.835 kb on + strand, within EX31_RS01880 at 406.835 kb on + strand, within EX31_RS01880 at 406.836 kb on - strand, within EX31_RS01880
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 403,370 - EX31_RS01860 0.88 +1.7 403,471 - +0.1 403,471 - -0.3 403,507 + -0.2 403,507 + +0.2 403,507 + -0.8 403,507 + +0.1 403,699 + EX31_RS01865 0.26 +2.1 403,700 - EX31_RS01865 0.27 +0.6 403,700 - EX31_RS01865 0.27 +0.3 403,719 - EX31_RS01865 0.30 -0.0 403,721 - EX31_RS01865 0.30 +0.9 403,721 - EX31_RS01865 0.30 -0.0 403,735 - EX31_RS01865 0.32 +0.4 403,737 + EX31_RS01865 0.32 +0.4 403,737 + EX31_RS01865 0.32 +0.2 403,749 + EX31_RS01865 0.34 -0.0 403,750 - EX31_RS01865 0.34 +0.2 403,753 + EX31_RS01865 0.35 +0.5 403,754 - EX31_RS01865 0.35 +0.6 403,814 + EX31_RS01865 0.44 -0.6 403,856 - EX31_RS01865 0.50 -0.0 403,910 + EX31_RS01865 0.59 -0.7 403,989 + EX31_RS01865 0.71 -1.8 403,990 - EX31_RS01865 0.71 -0.4 404,130 + +0.6 404,130 + -0.4 404,135 - -0.0 404,135 - +1.7 404,149 + +0.6 404,149 + +0.2 404,149 + -0.2 404,149 + -0.6 404,149 + +0.9 404,149 + +1.9 404,149 + -0.3 404,149 + +0.7 404,149 + +0.4 404,149 + -0.6 404,150 - +0.4 404,150 - -1.1 404,150 - -0.2 404,150 - -1.4 404,194 - +0.9 404,202 + -1.0 404,203 - +0.4 404,203 - +0.1 404,205 + +1.2 404,318 - -0.5 404,339 - -0.4 404,363 + EX31_RS01870 0.11 +0.9 404,364 - EX31_RS01870 0.11 +1.2 404,371 + EX31_RS01870 0.11 +1.0 404,372 - EX31_RS01870 0.11 +0.0 404,372 - EX31_RS01870 0.11 -0.5 404,489 + EX31_RS01870 0.18 -1.5 404,611 + EX31_RS01870 0.25 -0.4 404,756 - EX31_RS01870 0.34 -0.9 404,774 - EX31_RS01870 0.35 -0.2 404,812 - EX31_RS01870 0.37 -0.1 404,842 + EX31_RS01870 0.39 -0.8 405,030 + EX31_RS01870 0.50 -2.0 405,030 + EX31_RS01870 0.50 -1.2 405,030 + EX31_RS01870 0.50 -1.2 405,031 - EX31_RS01870 0.50 -0.1 405,031 - EX31_RS01870 0.50 -0.3 405,043 + EX31_RS01870 0.51 -0.2 405,107 + EX31_RS01870 0.55 +0.1 405,168 + EX31_RS01870 0.58 +0.1 405,169 - EX31_RS01870 0.58 -0.9 405,229 - EX31_RS01870 0.62 -0.9 405,255 + EX31_RS01870 0.63 -0.1 405,255 + EX31_RS01870 0.63 -0.6 405,255 + EX31_RS01870 0.63 +0.4 405,255 + EX31_RS01870 0.63 +0.4 405,256 - EX31_RS01870 0.63 +0.4 405,256 - EX31_RS01870 0.63 -2.0 405,257 + EX31_RS01870 0.63 +0.1 405,257 + EX31_RS01870 0.63 -2.5 405,257 + EX31_RS01870 0.63 -0.0 405,258 - EX31_RS01870 0.63 -0.0 405,259 + EX31_RS01870 0.63 +0.6 405,312 + EX31_RS01870 0.67 -0.2 405,367 + EX31_RS01870 0.70 -0.7 405,367 + EX31_RS01870 0.70 -0.0 405,367 + EX31_RS01870 0.70 -0.9 405,368 - EX31_RS01870 0.70 -0.6 405,368 - EX31_RS01870 0.70 +0.3 405,381 + EX31_RS01870 0.71 -0.2 405,381 + EX31_RS01870 0.71 -0.0 405,381 + EX31_RS01870 0.71 -0.5 405,381 + EX31_RS01870 0.71 +1.3 405,382 - EX31_RS01870 0.71 -0.4 405,382 - EX31_RS01870 0.71 -0.5 405,382 - EX31_RS01870 0.71 +0.1 405,382 - EX31_RS01870 0.71 +0.3 405,383 + EX31_RS01870 0.71 +0.8 405,383 + EX31_RS01870 0.71 -0.1 405,428 - EX31_RS01870 0.73 +0.0 405,498 + EX31_RS01870 0.78 -0.9 405,606 + EX31_RS01870 0.84 -1.5 405,643 + EX31_RS01870 0.86 +0.7 405,643 + EX31_RS01870 0.86 +0.2 405,684 + EX31_RS01870 0.89 -0.6 405,744 - +0.6 405,905 + +0.0 405,905 + +0.5 405,959 + +0.4 406,028 - EX31_RS01875 0.24 -0.0 406,028 - EX31_RS01875 0.24 +0.4 406,028 - EX31_RS01875 0.24 -0.2 406,071 + EX31_RS01875 0.33 -0.7 406,120 + EX31_RS01875 0.43 -0.1 406,121 - EX31_RS01875 0.43 +0.6 406,211 - EX31_RS01875 0.61 -0.4 406,211 - EX31_RS01875 0.61 +0.2 406,311 + EX31_RS01875 0.82 -0.5 406,311 + EX31_RS01875 0.82 +1.5 406,345 + EX31_RS01875 0.88 +0.4 406,345 + EX31_RS01875 0.88 -0.7 406,345 + EX31_RS01875 0.88 +0.4 406,389 + +0.7 406,389 + +0.3 406,390 - -0.7 406,390 - -0.1 406,390 - +0.2 406,390 - -0.8 406,407 + +0.2 406,543 + -0.0 406,543 + -0.1 406,543 + -1.5 406,544 - +0.9 406,547 + +0.7 406,560 + -0.2 406,560 + +0.1 406,587 - +2.0 406,599 - -1.4 406,805 + -0.0 406,805 + -0.0 406,835 + EX31_RS01880 0.10 +1.0 406,835 + EX31_RS01880 0.10 +0.2 406,836 - EX31_RS01880 0.10 +0.2
Or see this region's nucleotide sequence