Strain Fitness in Rahnella sp. WP5 around EX31_RS26085

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17625 and EX31_RS26085 are separated by 45 nucleotidesEX31_RS26085 and EX31_RS17630 are separated by 303 nucleotides EX31_RS17625: EX31_RS17625 - LysR family transcriptional regulator, at 76,126 to 77,025 _RS17625 EX31_RS26085: EX31_RS26085 - alpha/beta hydrolase, at 77,071 to 77,202 _RS26085 EX31_RS17630: EX31_RS17630 - zinc-binding alcohol dehydrogenase family protein, at 77,506 to 78,441 _RS17630 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 76.086 kb on - strandat 76.090 kb on - strandat 76.090 kb on - strandat 76.092 kb on + strandat 76.141 kb on + strandat 76.141 kb on + strandat 76.142 kb on - strandat 76.142 kb on - strandat 76.155 kb on + strandat 76.215 kb on - strandat 76.260 kb on + strand, within EX31_RS17625at 76.261 kb on - strand, within EX31_RS17625at 76.261 kb on - strand, within EX31_RS17625at 76.261 kb on - strand, within EX31_RS17625at 76.438 kb on + strand, within EX31_RS17625at 76.439 kb on - strand, within EX31_RS17625at 76.439 kb on - strand, within EX31_RS17625at 76.462 kb on - strand, within EX31_RS17625at 76.493 kb on + strand, within EX31_RS17625at 76.493 kb on + strand, within EX31_RS17625at 76.494 kb on - strand, within EX31_RS17625at 76.630 kb on + strand, within EX31_RS17625at 76.630 kb on + strand, within EX31_RS17625at 76.630 kb on + strand, within EX31_RS17625at 76.630 kb on + strand, within EX31_RS17625at 76.631 kb on - strand, within EX31_RS17625at 76.663 kb on - strand, within EX31_RS17625at 76.717 kb on - strand, within EX31_RS17625at 76.756 kb on - strand, within EX31_RS17625at 76.756 kb on - strand, within EX31_RS17625at 76.829 kb on + strand, within EX31_RS17625at 76.829 kb on + strand, within EX31_RS17625at 76.871 kb on - strand, within EX31_RS17625at 76.930 kb on + strand, within EX31_RS17625at 76.931 kb on - strand, within EX31_RS17625at 76.942 kb on + strandat 76.943 kb on - strandat 76.948 kb on + strandat 76.951 kb on + strandat 76.951 kb on + strandat 76.955 kb on + strandat 76.955 kb on + strandat 76.956 kb on - strandat 77.035 kb on + strandat 77.077 kb on + strandat 77.077 kb on + strandat 77.077 kb on + strandat 77.078 kb on - strandat 77.078 kb on - strandat 77.078 kb on - strandat 77.079 kb on + strandat 77.079 kb on + strandat 77.080 kb on - strandat 77.118 kb on + strand, within EX31_RS26085at 77.118 kb on + strand, within EX31_RS26085at 77.119 kb on - strand, within EX31_RS26085at 77.205 kb on + strandat 77.235 kb on + strandat 77.250 kb on - strandat 77.258 kb on + strandat 77.305 kb on + strandat 77.359 kb on + strandat 77.360 kb on - strandat 77.360 kb on - strandat 77.360 kb on - strandat 77.436 kb on - strandat 77.502 kb on - strandat 77.620 kb on + strand, within EX31_RS17630at 77.621 kb on - strand, within EX31_RS17630at 77.623 kb on + strand, within EX31_RS17630at 77.659 kb on + strand, within EX31_RS17630at 77.659 kb on + strand, within EX31_RS17630at 77.660 kb on - strand, within EX31_RS17630at 77.660 kb on - strand, within EX31_RS17630at 77.660 kb on - strand, within EX31_RS17630at 77.704 kb on + strand, within EX31_RS17630at 77.705 kb on - strand, within EX31_RS17630at 77.707 kb on + strand, within EX31_RS17630at 77.708 kb on - strand, within EX31_RS17630at 77.708 kb on - strand, within EX31_RS17630at 77.715 kb on + strand, within EX31_RS17630at 77.719 kb on + strand, within EX31_RS17630at 77.719 kb on + strand, within EX31_RS17630at 77.719 kb on + strand, within EX31_RS17630at 77.719 kb on + strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.720 kb on - strand, within EX31_RS17630at 77.726 kb on - strand, within EX31_RS17630at 77.740 kb on + strand, within EX31_RS17630at 77.741 kb on - strand, within EX31_RS17630at 77.741 kb on - strand, within EX31_RS17630at 77.802 kb on + strand, within EX31_RS17630at 77.803 kb on - strand, within EX31_RS17630at 77.803 kb on - strand, within EX31_RS17630at 77.803 kb on - strand, within EX31_RS17630at 77.882 kb on - strand, within EX31_RS17630at 77.895 kb on + strand, within EX31_RS17630at 77.905 kb on - strand, within EX31_RS17630at 77.946 kb on + strand, within EX31_RS17630at 78.153 kb on + strand, within EX31_RS17630at 78.153 kb on + strand, within EX31_RS17630at 78.159 kb on + strand, within EX31_RS17630at 78.165 kb on + strand, within EX31_RS17630

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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76,086 - +0.9
76,090 - -0.7
76,090 - -1.7
76,092 + -0.4
76,141 + +1.5
76,141 + -0.8
76,142 - -0.7
76,142 - -0.3
76,155 + +0.6
76,215 - +0.8
76,260 + EX31_RS17625 0.15 +0.1
76,261 - EX31_RS17625 0.15 +0.5
76,261 - EX31_RS17625 0.15 -0.4
76,261 - EX31_RS17625 0.15 -0.2
76,438 + EX31_RS17625 0.35 +0.6
76,439 - EX31_RS17625 0.35 -0.9
76,439 - EX31_RS17625 0.35 +0.3
76,462 - EX31_RS17625 0.37 +1.1
76,493 + EX31_RS17625 0.41 -0.5
76,493 + EX31_RS17625 0.41 -1.7
76,494 - EX31_RS17625 0.41 +0.6
76,630 + EX31_RS17625 0.56 +0.3
76,630 + EX31_RS17625 0.56 +1.1
76,630 + EX31_RS17625 0.56 -0.2
76,630 + EX31_RS17625 0.56 +0.7
76,631 - EX31_RS17625 0.56 +0.4
76,663 - EX31_RS17625 0.60 +0.7
76,717 - EX31_RS17625 0.66 -0.1
76,756 - EX31_RS17625 0.70 -0.4
76,756 - EX31_RS17625 0.70 -0.2
76,829 + EX31_RS17625 0.78 +0.8
76,829 + EX31_RS17625 0.78 -0.7
76,871 - EX31_RS17625 0.83 +1.0
76,930 + EX31_RS17625 0.89 -0.0
76,931 - EX31_RS17625 0.89 +1.7
76,942 + -0.7
76,943 - +0.1
76,948 + -1.7
76,951 + +1.0
76,951 + +0.3
76,955 + +0.2
76,955 + -1.3
76,956 - +2.0
77,035 + +0.1
77,077 + -0.6
77,077 + -0.8
77,077 + -0.4
77,078 - -0.3
77,078 - -0.2
77,078 - +0.5
77,079 + +0.4
77,079 + -0.5
77,080 - +1.4
77,118 + EX31_RS26085 0.36 -0.0
77,118 + EX31_RS26085 0.36 -0.3
77,119 - EX31_RS26085 0.36 -0.7
77,205 + -0.4
77,235 + -0.5
77,250 - +0.4
77,258 + +0.4
77,305 + +0.3
77,359 + -1.4
77,360 - -0.3
77,360 - +2.0
77,360 - -0.1
77,436 - -0.2
77,502 - +0.9
77,620 + EX31_RS17630 0.12 -0.3
77,621 - EX31_RS17630 0.12 +0.6
77,623 + EX31_RS17630 0.12 +0.3
77,659 + EX31_RS17630 0.16 +0.4
77,659 + EX31_RS17630 0.16 +0.3
77,660 - EX31_RS17630 0.16 +0.2
77,660 - EX31_RS17630 0.16 -0.2
77,660 - EX31_RS17630 0.16 -0.5
77,704 + EX31_RS17630 0.21 -1.5
77,705 - EX31_RS17630 0.21 +0.1
77,707 + EX31_RS17630 0.21 +0.4
77,708 - EX31_RS17630 0.22 +1.8
77,708 - EX31_RS17630 0.22 +0.8
77,715 + EX31_RS17630 0.22 +1.8
77,719 + EX31_RS17630 0.23 -1.5
77,719 + EX31_RS17630 0.23 +1.5
77,719 + EX31_RS17630 0.23 +0.1
77,719 + EX31_RS17630 0.23 -0.9
77,720 - EX31_RS17630 0.23 -0.2
77,720 - EX31_RS17630 0.23 -0.5
77,720 - EX31_RS17630 0.23 -0.6
77,720 - EX31_RS17630 0.23 -2.3
77,720 - EX31_RS17630 0.23 +0.4
77,720 - EX31_RS17630 0.23 +0.4
77,720 - EX31_RS17630 0.23 -1.0
77,720 - EX31_RS17630 0.23 +1.2
77,720 - EX31_RS17630 0.23 +0.3
77,720 - EX31_RS17630 0.23 +1.1
77,720 - EX31_RS17630 0.23 +0.2
77,726 - EX31_RS17630 0.24 +0.2
77,740 + EX31_RS17630 0.25 +1.5
77,741 - EX31_RS17630 0.25 -0.7
77,741 - EX31_RS17630 0.25 -0.4
77,802 + EX31_RS17630 0.32 +0.4
77,803 - EX31_RS17630 0.32 +0.2
77,803 - EX31_RS17630 0.32 +0.6
77,803 - EX31_RS17630 0.32 +0.1
77,882 - EX31_RS17630 0.40 +0.2
77,895 + EX31_RS17630 0.42 -0.4
77,905 - EX31_RS17630 0.43 +0.3
77,946 + EX31_RS17630 0.47 -1.3
78,153 + EX31_RS17630 0.69 -0.8
78,153 + EX31_RS17630 0.69 -0.1
78,159 + EX31_RS17630 0.70 +1.2
78,165 + EX31_RS17630 0.70 +0.4

Or see this region's nucleotide sequence