Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08640 and EX31_RS25260 are separated by 660 nucleotides EX31_RS25260 and EX31_RS08645 are separated by 43 nucleotides
EX31_RS08640: EX31_RS08640 - putative DNA-binding transcriptional regulator, at 233,947 to 234,306
_RS08640
EX31_RS25260: EX31_RS25260 - transcriptional regulator, at 234,967 to 235,239
_RS25260
EX31_RS08645: EX31_RS08645 - malate dehydrogenase, at 235,283 to 236,221
_RS08645
Position (kb) 234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 233.968 kb on + strand at 233.968 kb on + strand at 233.968 kb on + strand at 233.968 kb on + strand at 233.968 kb on + strand at 233.968 kb on + strand at 233.968 kb on + strand at 233.969 kb on - strand at 233.990 kb on - strand, within EX31_RS08640 at 234.048 kb on + strand, within EX31_RS08640 at 234.048 kb on + strand, within EX31_RS08640 at 234.048 kb on + strand, within EX31_RS08640 at 234.048 kb on + strand, within EX31_RS08640 at 234.048 kb on + strand, within EX31_RS08640 at 234.048 kb on + strand, within EX31_RS08640 at 234.049 kb on - strand, within EX31_RS08640 at 234.049 kb on - strand, within EX31_RS08640 at 234.049 kb on - strand, within EX31_RS08640 at 234.049 kb on - strand, within EX31_RS08640 at 234.049 kb on - strand, within EX31_RS08640 at 234.049 kb on - strand, within EX31_RS08640 at 234.049 kb on - strand, within EX31_RS08640 at 234.050 kb on + strand, within EX31_RS08640 at 234.050 kb on + strand, within EX31_RS08640 at 234.050 kb on + strand, within EX31_RS08640 at 234.051 kb on - strand, within EX31_RS08640 at 234.051 kb on - strand, within EX31_RS08640 at 234.051 kb on - strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.090 kb on + strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.091 kb on - strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.092 kb on + strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.093 kb on - strand, within EX31_RS08640 at 234.098 kb on + strand, within EX31_RS08640 at 234.098 kb on + strand, within EX31_RS08640 at 234.098 kb on + strand, within EX31_RS08640 at 234.098 kb on + strand, within EX31_RS08640 at 234.099 kb on - strand, within EX31_RS08640 at 234.099 kb on - strand, within EX31_RS08640 at 234.099 kb on - strand, within EX31_RS08640 at 234.099 kb on - strand, within EX31_RS08640 at 234.099 kb on - strand, within EX31_RS08640 at 234.099 kb on - strand, within EX31_RS08640 at 234.099 kb on - strand, within EX31_RS08640 at 234.164 kb on + strand, within EX31_RS08640 at 234.164 kb on + strand, within EX31_RS08640 at 234.164 kb on + strand, within EX31_RS08640 at 234.323 kb on + strand at 234.327 kb on - strand at 234.327 kb on - strand at 234.330 kb on + strand at 234.331 kb on - strand at 234.331 kb on - strand at 234.331 kb on - strand at 234.331 kb on - strand at 234.331 kb on - strand at 234.331 kb on - strand at 234.331 kb on - strand at 234.331 kb on - strand at 234.335 kb on - strand at 234.352 kb on + strand at 234.352 kb on + strand at 234.352 kb on + strand at 234.397 kb on - strand at 234.411 kb on - strand at 234.414 kb on - strand at 234.418 kb on + strand at 234.419 kb on - strand at 234.480 kb on + strand at 234.488 kb on + strand at 234.488 kb on + strand at 234.488 kb on + strand at 234.488 kb on + strand at 234.489 kb on - strand at 234.516 kb on - strand at 234.690 kb on - strand at 234.756 kb on + strand at 234.849 kb on - strand at 234.887 kb on + strand at 234.887 kb on + strand at 234.888 kb on - strand at 234.889 kb on + strand at 234.889 kb on + strand at 234.890 kb on - strand at 234.931 kb on + strand at 234.931 kb on + strand at 234.932 kb on - strand at 235.003 kb on - strand, within EX31_RS25260 at 235.005 kb on + strand, within EX31_RS25260 at 235.005 kb on + strand, within EX31_RS25260 at 235.006 kb on - strand, within EX31_RS25260 at 235.046 kb on + strand, within EX31_RS25260 at 235.047 kb on - strand, within EX31_RS25260 at 235.164 kb on + strand, within EX31_RS25260 at 235.288 kb on + strand at 235.289 kb on - strand at 235.289 kb on - strand at 235.294 kb on + strand at 235.295 kb on - strand at 235.388 kb on - strand, within EX31_RS08645 at 235.409 kb on - strand, within EX31_RS08645 at 235.409 kb on - strand, within EX31_RS08645 at 235.413 kb on - strand, within EX31_RS08645 at 235.413 kb on - strand, within EX31_RS08645 at 235.444 kb on - strand, within EX31_RS08645 at 235.453 kb on + strand, within EX31_RS08645 at 235.454 kb on - strand, within EX31_RS08645 at 235.465 kb on - strand, within EX31_RS08645 at 235.465 kb on - strand, within EX31_RS08645 at 235.465 kb on - strand, within EX31_RS08645 at 235.581 kb on - strand, within EX31_RS08645 at 235.668 kb on - strand, within EX31_RS08645 at 235.668 kb on - strand, within EX31_RS08645 at 235.668 kb on - strand, within EX31_RS08645 at 235.718 kb on - strand, within EX31_RS08645 at 235.733 kb on - strand, within EX31_RS08645 at 235.810 kb on - strand, within EX31_RS08645 at 235.855 kb on + strand, within EX31_RS08645 at 235.856 kb on - strand, within EX31_RS08645 at 235.874 kb on - strand, within EX31_RS08645 at 235.874 kb on - strand, within EX31_RS08645 at 235.876 kb on + strand, within EX31_RS08645 at 235.876 kb on + strand, within EX31_RS08645 at 235.877 kb on - strand, within EX31_RS08645 at 235.877 kb on - strand, within EX31_RS08645 at 235.901 kb on - strand, within EX31_RS08645 at 235.949 kb on - strand, within EX31_RS08645 at 235.979 kb on - strand, within EX31_RS08645 at 236.033 kb on - strand, within EX31_RS08645 at 236.078 kb on - strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.124 kb on + strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.125 kb on - strand, within EX31_RS08645 at 236.126 kb on + strand, within EX31_RS08645 at 236.126 kb on + strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.127 kb on - strand, within EX31_RS08645 at 236.151 kb on - strand at 236.204 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 233,968 + +0.1 233,968 + +0.0 233,968 + +0.4 233,968 + +0.9 233,968 + -0.3 233,968 + +0.5 233,968 + +0.5 233,969 - +0.5 233,990 - EX31_RS08640 0.12 -0.0 234,048 + EX31_RS08640 0.28 -0.4 234,048 + EX31_RS08640 0.28 +0.5 234,048 + EX31_RS08640 0.28 -0.4 234,048 + EX31_RS08640 0.28 -0.1 234,048 + EX31_RS08640 0.28 +0.2 234,048 + EX31_RS08640 0.28 -0.5 234,049 - EX31_RS08640 0.28 +0.3 234,049 - EX31_RS08640 0.28 -0.4 234,049 - EX31_RS08640 0.28 +0.5 234,049 - EX31_RS08640 0.28 -1.3 234,049 - EX31_RS08640 0.28 +0.6 234,049 - EX31_RS08640 0.28 +0.2 234,049 - EX31_RS08640 0.28 +0.5 234,050 + EX31_RS08640 0.29 -0.2 234,050 + EX31_RS08640 0.29 -0.2 234,050 + EX31_RS08640 0.29 -0.3 234,051 - EX31_RS08640 0.29 -0.1 234,051 - EX31_RS08640 0.29 -0.2 234,051 - EX31_RS08640 0.29 +0.5 234,090 + EX31_RS08640 0.40 -1.8 234,090 + EX31_RS08640 0.40 -2.9 234,090 + EX31_RS08640 0.40 +0.1 234,090 + EX31_RS08640 0.40 -0.1 234,090 + EX31_RS08640 0.40 -0.8 234,090 + EX31_RS08640 0.40 +0.0 234,090 + EX31_RS08640 0.40 -0.5 234,090 + EX31_RS08640 0.40 -0.2 234,090 + EX31_RS08640 0.40 +0.4 234,090 + EX31_RS08640 0.40 -0.7 234,090 + EX31_RS08640 0.40 -0.4 234,090 + EX31_RS08640 0.40 +0.4 234,090 + EX31_RS08640 0.40 +0.5 234,090 + EX31_RS08640 0.40 +0.5 234,090 + EX31_RS08640 0.40 +0.8 234,090 + EX31_RS08640 0.40 +0.5 234,090 + EX31_RS08640 0.40 -0.7 234,090 + EX31_RS08640 0.40 -0.5 234,091 - EX31_RS08640 0.40 +0.2 234,091 - EX31_RS08640 0.40 +0.8 234,091 - EX31_RS08640 0.40 -0.5 234,091 - EX31_RS08640 0.40 +0.5 234,091 - EX31_RS08640 0.40 -0.1 234,091 - EX31_RS08640 0.40 +0.5 234,091 - EX31_RS08640 0.40 -0.4 234,091 - EX31_RS08640 0.40 +0.2 234,091 - EX31_RS08640 0.40 +0.1 234,091 - EX31_RS08640 0.40 +0.1 234,091 - EX31_RS08640 0.40 +0.3 234,091 - EX31_RS08640 0.40 +0.4 234,091 - EX31_RS08640 0.40 +0.7 234,091 - EX31_RS08640 0.40 +0.6 234,091 - EX31_RS08640 0.40 -0.3 234,091 - EX31_RS08640 0.40 -0.1 234,091 - EX31_RS08640 0.40 -0.4 234,092 + EX31_RS08640 0.40 -0.7 234,092 + EX31_RS08640 0.40 +0.3 234,092 + EX31_RS08640 0.40 +0.8 234,092 + EX31_RS08640 0.40 -0.1 234,092 + EX31_RS08640 0.40 -0.8 234,092 + EX31_RS08640 0.40 -0.4 234,092 + EX31_RS08640 0.40 +0.0 234,092 + EX31_RS08640 0.40 +0.2 234,092 + EX31_RS08640 0.40 +0.2 234,093 - EX31_RS08640 0.41 +0.9 234,093 - EX31_RS08640 0.41 +0.1 234,093 - EX31_RS08640 0.41 +0.6 234,093 - EX31_RS08640 0.41 +0.1 234,093 - EX31_RS08640 0.41 +0.1 234,093 - EX31_RS08640 0.41 +1.0 234,093 - EX31_RS08640 0.41 +0.2 234,093 - EX31_RS08640 0.41 +0.0 234,093 - EX31_RS08640 0.41 +1.0 234,093 - EX31_RS08640 0.41 -0.2 234,093 - EX31_RS08640 0.41 +0.3 234,093 - EX31_RS08640 0.41 -0.1 234,093 - EX31_RS08640 0.41 +0.1 234,093 - EX31_RS08640 0.41 -0.6 234,093 - EX31_RS08640 0.41 -0.0 234,093 - EX31_RS08640 0.41 -0.1 234,093 - EX31_RS08640 0.41 +0.6 234,098 + EX31_RS08640 0.42 +0.9 234,098 + EX31_RS08640 0.42 +1.2 234,098 + EX31_RS08640 0.42 -0.3 234,098 + EX31_RS08640 0.42 +0.5 234,099 - EX31_RS08640 0.42 +0.1 234,099 - EX31_RS08640 0.42 -0.3 234,099 - EX31_RS08640 0.42 +0.6 234,099 - EX31_RS08640 0.42 -0.6 234,099 - EX31_RS08640 0.42 -0.4 234,099 - EX31_RS08640 0.42 -0.1 234,099 - EX31_RS08640 0.42 -0.4 234,164 + EX31_RS08640 0.60 -2.7 234,164 + EX31_RS08640 0.60 +1.6 234,164 + EX31_RS08640 0.60 +0.8 234,323 + +1.3 234,327 - +0.1 234,327 - -1.2 234,330 + +2.9 234,331 - +0.5 234,331 - -0.7 234,331 - +0.7 234,331 - +0.2 234,331 - -0.4 234,331 - +1.2 234,331 - -1.4 234,331 - +0.8 234,335 - +0.3 234,352 + -1.3 234,352 + +0.9 234,352 + -0.0 234,397 - +0.5 234,411 - +0.3 234,414 - +0.8 234,418 + -0.4 234,419 - +0.3 234,480 + +0.5 234,488 + +0.8 234,488 + +0.7 234,488 + +0.4 234,488 + +1.7 234,489 - +1.0 234,516 - +0.6 234,690 - -0.3 234,756 + +0.9 234,849 - -0.2 234,887 + -0.6 234,887 + +0.8 234,888 - +1.2 234,889 + -0.5 234,889 + +0.5 234,890 - +1.1 234,931 + +0.1 234,931 + +0.8 234,932 - -2.7 235,003 - EX31_RS25260 0.13 -0.5 235,005 + EX31_RS25260 0.14 -1.8 235,005 + EX31_RS25260 0.14 -0.3 235,006 - EX31_RS25260 0.14 -0.5 235,046 + EX31_RS25260 0.29 -0.6 235,047 - EX31_RS25260 0.29 -0.8 235,164 + EX31_RS25260 0.72 -0.7 235,288 + +0.1 235,289 - -0.2 235,289 - +0.6 235,294 + +0.0 235,295 - +0.0 235,388 - EX31_RS08645 0.11 +0.6 235,409 - EX31_RS08645 0.13 -0.5 235,409 - EX31_RS08645 0.13 -0.3 235,413 - EX31_RS08645 0.14 +0.5 235,413 - EX31_RS08645 0.14 +0.1 235,444 - EX31_RS08645 0.17 -0.8 235,453 + EX31_RS08645 0.18 +0.4 235,454 - EX31_RS08645 0.18 +0.3 235,465 - EX31_RS08645 0.19 +0.1 235,465 - EX31_RS08645 0.19 -0.2 235,465 - EX31_RS08645 0.19 -0.9 235,581 - EX31_RS08645 0.32 -0.0 235,668 - EX31_RS08645 0.41 -0.1 235,668 - EX31_RS08645 0.41 -1.5 235,668 - EX31_RS08645 0.41 +0.7 235,718 - EX31_RS08645 0.46 -0.0 235,733 - EX31_RS08645 0.48 -1.1 235,810 - EX31_RS08645 0.56 +0.2 235,855 + EX31_RS08645 0.61 +2.5 235,856 - EX31_RS08645 0.61 -0.4 235,874 - EX31_RS08645 0.63 +0.2 235,874 - EX31_RS08645 0.63 +1.2 235,876 + EX31_RS08645 0.63 -1.0 235,876 + EX31_RS08645 0.63 -0.1 235,877 - EX31_RS08645 0.63 -0.1 235,877 - EX31_RS08645 0.63 +0.8 235,901 - EX31_RS08645 0.66 +0.9 235,949 - EX31_RS08645 0.71 +2.3 235,979 - EX31_RS08645 0.74 +0.7 236,033 - EX31_RS08645 0.80 -0.5 236,078 - EX31_RS08645 0.85 -0.4 236,124 + EX31_RS08645 0.90 +0.8 236,124 + EX31_RS08645 0.90 +0.5 236,124 + EX31_RS08645 0.90 -0.6 236,124 + EX31_RS08645 0.90 +1.2 236,124 + EX31_RS08645 0.90 +0.2 236,124 + EX31_RS08645 0.90 -0.7 236,125 - EX31_RS08645 0.90 -0.4 236,125 - EX31_RS08645 0.90 +1.3 236,125 - EX31_RS08645 0.90 +1.0 236,125 - EX31_RS08645 0.90 +0.2 236,125 - EX31_RS08645 0.90 -0.0 236,125 - EX31_RS08645 0.90 -0.4 236,125 - EX31_RS08645 0.90 -0.2 236,125 - EX31_RS08645 0.90 -0.5 236,125 - EX31_RS08645 0.90 +0.1 236,126 + EX31_RS08645 0.90 +0.2 236,126 + EX31_RS08645 0.90 -0.4 236,127 - EX31_RS08645 0.90 -0.3 236,127 - EX31_RS08645 0.90 -0.0 236,127 - EX31_RS08645 0.90 +0.7 236,127 - EX31_RS08645 0.90 +0.1 236,151 - -0.0 236,204 + -0.3
Or see this region's nucleotide sequence