Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07035 and EX31_RS25225 are separated by 224 nucleotides EX31_RS25225 and EX31_RS07040 overlap by 32 nucleotides
EX31_RS07035: EX31_RS07035 - guanine deaminase, at 198,273 to 199,625
_RS07035
EX31_RS25225: EX31_RS25225 - hypothetical protein, at 199,850 to 200,440
_RS25225
EX31_RS07040: EX31_RS07040 - ROK family transcriptional regulator, at 200,409 to 201,584
_RS07040
Position (kb) 199
200
201 Strain fitness (log2 ratio) -2
-1
0
1 at 198.912 kb on - strand, within EX31_RS07035 at 198.919 kb on + strand, within EX31_RS07035 at 198.919 kb on + strand, within EX31_RS07035 at 198.919 kb on + strand, within EX31_RS07035 at 198.920 kb on - strand, within EX31_RS07035 at 198.942 kb on - strand, within EX31_RS07035 at 198.942 kb on - strand, within EX31_RS07035 at 199.136 kb on + strand, within EX31_RS07035 at 199.136 kb on + strand, within EX31_RS07035 at 199.279 kb on + strand, within EX31_RS07035 at 199.301 kb on + strand, within EX31_RS07035 at 199.370 kb on + strand, within EX31_RS07035 at 199.529 kb on + strand at 199.529 kb on + strand at 199.529 kb on + strand at 199.771 kb on - strand at 199.813 kb on + strand at 199.833 kb on - strand at 199.843 kb on + strand at 199.921 kb on + strand, within EX31_RS25225 at 199.922 kb on - strand, within EX31_RS25225 at 199.922 kb on - strand, within EX31_RS25225 at 199.923 kb on + strand, within EX31_RS25225 at 199.924 kb on - strand, within EX31_RS25225 at 200.025 kb on - strand, within EX31_RS25225 at 200.238 kb on + strand, within EX31_RS25225 at 200.238 kb on + strand, within EX31_RS25225 at 200.318 kb on - strand, within EX31_RS25225 at 200.387 kb on - strand at 200.451 kb on + strand at 200.548 kb on + strand, within EX31_RS07040 at 200.591 kb on + strand, within EX31_RS07040 at 200.591 kb on + strand, within EX31_RS07040 at 200.646 kb on - strand, within EX31_RS07040 at 200.646 kb on - strand, within EX31_RS07040 at 200.646 kb on - strand, within EX31_RS07040 at 200.785 kb on + strand, within EX31_RS07040 at 200.785 kb on + strand, within EX31_RS07040 at 200.815 kb on + strand, within EX31_RS07040 at 200.932 kb on + strand, within EX31_RS07040 at 200.932 kb on + strand, within EX31_RS07040 at 200.932 kb on + strand, within EX31_RS07040 at 200.933 kb on - strand, within EX31_RS07040 at 200.933 kb on - strand, within EX31_RS07040 at 200.938 kb on + strand, within EX31_RS07040 at 200.952 kb on + strand, within EX31_RS07040 at 200.953 kb on - strand, within EX31_RS07040 at 201.063 kb on - strand, within EX31_RS07040 at 201.240 kb on + strand, within EX31_RS07040 at 201.240 kb on + strand, within EX31_RS07040 at 201.241 kb on - strand, within EX31_RS07040 at 201.331 kb on + strand, within EX31_RS07040
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 198,912 - EX31_RS07035 0.47 -0.7 198,919 + EX31_RS07035 0.48 +0.1 198,919 + EX31_RS07035 0.48 +0.2 198,919 + EX31_RS07035 0.48 -0.4 198,920 - EX31_RS07035 0.48 +1.1 198,942 - EX31_RS07035 0.49 -0.6 198,942 - EX31_RS07035 0.49 -1.9 199,136 + EX31_RS07035 0.64 -0.1 199,136 + EX31_RS07035 0.64 +0.4 199,279 + EX31_RS07035 0.74 -1.0 199,301 + EX31_RS07035 0.76 -1.0 199,370 + EX31_RS07035 0.81 -0.9 199,529 + -0.2 199,529 + -0.6 199,529 + +1.1 199,771 - +1.6 199,813 + +0.3 199,833 - +0.9 199,843 + +1.6 199,921 + EX31_RS25225 0.12 -0.3 199,922 - EX31_RS25225 0.12 +0.5 199,922 - EX31_RS25225 0.12 +0.3 199,923 + EX31_RS25225 0.12 -1.2 199,924 - EX31_RS25225 0.13 -0.1 200,025 - EX31_RS25225 0.30 -0.9 200,238 + EX31_RS25225 0.66 -0.2 200,238 + EX31_RS25225 0.66 -2.1 200,318 - EX31_RS25225 0.79 -1.0 200,387 - +0.0 200,451 + -0.0 200,548 + EX31_RS07040 0.12 +0.2 200,591 + EX31_RS07040 0.15 +1.3 200,591 + EX31_RS07040 0.15 +1.1 200,646 - EX31_RS07040 0.20 -0.7 200,646 - EX31_RS07040 0.20 -0.3 200,646 - EX31_RS07040 0.20 -0.3 200,785 + EX31_RS07040 0.32 -0.7 200,785 + EX31_RS07040 0.32 +0.7 200,815 + EX31_RS07040 0.35 +0.8 200,932 + EX31_RS07040 0.44 +0.5 200,932 + EX31_RS07040 0.44 -0.2 200,932 + EX31_RS07040 0.44 +1.1 200,933 - EX31_RS07040 0.45 -1.0 200,933 - EX31_RS07040 0.45 -1.7 200,938 + EX31_RS07040 0.45 +0.9 200,952 + EX31_RS07040 0.46 +0.2 200,953 - EX31_RS07040 0.46 -0.0 201,063 - EX31_RS07040 0.56 -0.9 201,240 + EX31_RS07040 0.71 -1.6 201,240 + EX31_RS07040 0.71 +1.3 201,241 - EX31_RS07040 0.71 -0.3 201,331 + EX31_RS07040 0.78 +0.6
Or see this region's nucleotide sequence