Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24550 and EX31_RS24555 are separated by 160 nucleotides EX31_RS24555 and EX31_RS24560 are separated by 26 nucleotides
EX31_RS24550: EX31_RS24550 - cupin domain-containing protein, at 679,879 to 681,000
_RS24550
EX31_RS24555: EX31_RS24555 - two-component system sensor histidine kinase PhoQ, at 681,161 to 682,618
_RS24555
EX31_RS24560: EX31_RS24560 - two-component system response regulator PhoP, at 682,645 to 683,319
_RS24560
Position (kb) 681
682
683 Strain fitness (log2 ratio) -2
-1
0
1
2 at 680.188 kb on - strand, within EX31_RS24550 at 680.257 kb on - strand, within EX31_RS24550 at 680.409 kb on - strand, within EX31_RS24550 at 680.462 kb on + strand, within EX31_RS24550 at 680.463 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.605 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550 at 680.609 kb on - strand, within EX31_RS24550 at 681.003 kb on + strand at 681.004 kb on - strand at 681.004 kb on - strand at 681.017 kb on + strand at 681.018 kb on - strand at 681.018 kb on - strand at 681.051 kb on - strand at 681.058 kb on + strand at 681.061 kb on - strand at 681.111 kb on - strand at 681.111 kb on - strand at 681.163 kb on - strand at 681.163 kb on - strand at 681.253 kb on - strand at 681.310 kb on + strand, within EX31_RS24555 at 681.310 kb on + strand, within EX31_RS24555 at 681.350 kb on - strand, within EX31_RS24555 at 681.353 kb on + strand, within EX31_RS24555 at 681.354 kb on - strand, within EX31_RS24555 at 681.441 kb on + strand, within EX31_RS24555 at 681.441 kb on + strand, within EX31_RS24555 at 681.442 kb on - strand, within EX31_RS24555 at 681.459 kb on - strand, within EX31_RS24555 at 681.459 kb on - strand, within EX31_RS24555 at 681.548 kb on - strand, within EX31_RS24555 at 681.555 kb on + strand, within EX31_RS24555 at 681.579 kb on - strand, within EX31_RS24555 at 681.579 kb on - strand, within EX31_RS24555 at 681.660 kb on + strand, within EX31_RS24555 at 681.664 kb on - strand, within EX31_RS24555 at 681.736 kb on + strand, within EX31_RS24555 at 681.822 kb on + strand, within EX31_RS24555 at 681.832 kb on - strand, within EX31_RS24555 at 681.868 kb on + strand, within EX31_RS24555 at 682.029 kb on - strand, within EX31_RS24555 at 682.035 kb on + strand, within EX31_RS24555 at 682.035 kb on + strand, within EX31_RS24555 at 682.036 kb on - strand, within EX31_RS24555 at 682.036 kb on - strand, within EX31_RS24555 at 682.132 kb on + strand, within EX31_RS24555 at 682.133 kb on - strand, within EX31_RS24555 at 682.133 kb on - strand, within EX31_RS24555 at 682.134 kb on + strand, within EX31_RS24555 at 682.134 kb on + strand, within EX31_RS24555 at 682.134 kb on + strand, within EX31_RS24555 at 682.135 kb on - strand, within EX31_RS24555 at 682.135 kb on - strand, within EX31_RS24555 at 682.135 kb on - strand, within EX31_RS24555 at 682.135 kb on - strand, within EX31_RS24555 at 682.138 kb on + strand, within EX31_RS24555 at 682.138 kb on + strand, within EX31_RS24555 at 682.185 kb on + strand, within EX31_RS24555 at 682.186 kb on - strand, within EX31_RS24555 at 682.198 kb on + strand, within EX31_RS24555 at 682.199 kb on - strand, within EX31_RS24555 at 682.199 kb on - strand, within EX31_RS24555 at 682.264 kb on - strand, within EX31_RS24555 at 682.298 kb on - strand, within EX31_RS24555 at 682.356 kb on + strand, within EX31_RS24555 at 682.357 kb on - strand, within EX31_RS24555 at 682.454 kb on - strand, within EX31_RS24555 at 682.454 kb on - strand, within EX31_RS24555 at 682.454 kb on - strand, within EX31_RS24555 at 682.503 kb on + strand at 682.503 kb on + strand at 682.504 kb on - strand at 682.504 kb on - strand at 682.543 kb on + strand at 682.543 kb on + strand at 682.543 kb on + strand at 682.544 kb on - strand at 682.547 kb on + strand at 682.547 kb on + strand at 682.548 kb on - strand at 682.667 kb on + strand at 682.681 kb on + strand at 682.848 kb on + strand, within EX31_RS24560 at 683.019 kb on + strand, within EX31_RS24560 at 683.028 kb on - strand, within EX31_RS24560 at 683.208 kb on - strand, within EX31_RS24560 at 683.285 kb on - strand at 683.377 kb on - strand at 683.396 kb on + strand at 683.397 kb on - strand at 683.452 kb on - strand at 683.453 kb on + strand at 683.454 kb on - strand at 683.478 kb on + strand at 683.500 kb on - strand at 683.514 kb on - strand at 683.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 680,188 - EX31_RS24550 0.28 +0.8 680,257 - EX31_RS24550 0.34 +0.3 680,409 - EX31_RS24550 0.47 -1.1 680,462 + EX31_RS24550 0.52 -1.2 680,463 - EX31_RS24550 0.52 -1.1 680,605 - EX31_RS24550 0.65 -0.6 680,605 - EX31_RS24550 0.65 +2.3 680,605 - EX31_RS24550 0.65 +0.7 680,605 - EX31_RS24550 0.65 -0.1 680,609 - EX31_RS24550 0.65 +0.3 680,609 - EX31_RS24550 0.65 +0.8 680,609 - EX31_RS24550 0.65 +0.4 680,609 - EX31_RS24550 0.65 -0.5 681,003 + +1.1 681,004 - -0.8 681,004 - -0.7 681,017 + -0.5 681,018 - +0.7 681,018 - -1.4 681,051 - -0.5 681,058 + -1.2 681,061 - -0.0 681,111 - +0.5 681,111 - +0.5 681,163 - +0.3 681,163 - +0.6 681,253 - -0.8 681,310 + EX31_RS24555 0.10 +0.3 681,310 + EX31_RS24555 0.10 -2.1 681,350 - EX31_RS24555 0.13 -0.6 681,353 + EX31_RS24555 0.13 -0.4 681,354 - EX31_RS24555 0.13 -0.8 681,441 + EX31_RS24555 0.19 -2.2 681,441 + EX31_RS24555 0.19 -1.2 681,442 - EX31_RS24555 0.19 -0.3 681,459 - EX31_RS24555 0.20 -0.5 681,459 - EX31_RS24555 0.20 +0.9 681,548 - EX31_RS24555 0.27 -1.4 681,555 + EX31_RS24555 0.27 -0.9 681,579 - EX31_RS24555 0.29 +0.1 681,579 - EX31_RS24555 0.29 -1.7 681,660 + EX31_RS24555 0.34 -2.1 681,664 - EX31_RS24555 0.34 -1.1 681,736 + EX31_RS24555 0.39 -0.4 681,822 + EX31_RS24555 0.45 -0.2 681,832 - EX31_RS24555 0.46 -0.4 681,868 + EX31_RS24555 0.48 +0.5 682,029 - EX31_RS24555 0.60 -0.8 682,035 + EX31_RS24555 0.60 -1.3 682,035 + EX31_RS24555 0.60 -0.7 682,036 - EX31_RS24555 0.60 -0.7 682,036 - EX31_RS24555 0.60 -0.6 682,132 + EX31_RS24555 0.67 -0.7 682,133 - EX31_RS24555 0.67 -0.5 682,133 - EX31_RS24555 0.67 -1.2 682,134 + EX31_RS24555 0.67 -1.2 682,134 + EX31_RS24555 0.67 -0.2 682,134 + EX31_RS24555 0.67 -1.4 682,135 - EX31_RS24555 0.67 -1.0 682,135 - EX31_RS24555 0.67 +0.7 682,135 - EX31_RS24555 0.67 -0.5 682,135 - EX31_RS24555 0.67 -2.0 682,138 + EX31_RS24555 0.67 -0.7 682,138 + EX31_RS24555 0.67 -2.3 682,185 + EX31_RS24555 0.70 -0.5 682,186 - EX31_RS24555 0.70 -1.1 682,198 + EX31_RS24555 0.71 -0.6 682,199 - EX31_RS24555 0.71 +1.1 682,199 - EX31_RS24555 0.71 -0.4 682,264 - EX31_RS24555 0.76 -0.2 682,298 - EX31_RS24555 0.78 -1.4 682,356 + EX31_RS24555 0.82 -2.1 682,357 - EX31_RS24555 0.82 -2.0 682,454 - EX31_RS24555 0.89 -0.3 682,454 - EX31_RS24555 0.89 -0.4 682,454 - EX31_RS24555 0.89 -0.6 682,503 + -1.3 682,503 + -2.6 682,504 - +0.3 682,504 - +1.0 682,543 + +0.4 682,543 + -1.0 682,543 + -1.1 682,544 - -0.1 682,547 + +0.2 682,547 + -1.5 682,548 - -0.2 682,667 + -0.1 682,681 + -0.1 682,848 + EX31_RS24560 0.30 -0.1 683,019 + EX31_RS24560 0.55 +0.8 683,028 - EX31_RS24560 0.57 -0.1 683,208 - EX31_RS24560 0.83 +0.7 683,285 - +1.3 683,377 - -0.6 683,396 + -0.2 683,397 - +1.5 683,452 - +0.4 683,453 + -0.8 683,454 - +0.1 683,478 + +0.2 683,500 - +0.4 683,514 - -0.3 683,514 - +0.3
Or see this region's nucleotide sequence