Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24375 and EX31_RS24380 are separated by 346 nucleotides EX31_RS24380 and EX31_RS24385 are separated by 81 nucleotides EX31_RS24385 and EX31_RS24390 are separated by 223 nucleotides EX31_RS24390 and EX31_RS24395 are separated by 73 nucleotides
EX31_RS24375: EX31_RS24375 - biofilm formation regulator BssS, at 643,349 to 643,603
_RS24375
EX31_RS24380: EX31_RS24380 - DNA damage-inducible protein I, at 643,950 to 644,204
_RS24380
EX31_RS24385: EX31_RS24385 - dihydroorotase, at 644,286 to 645,335
_RS24385
EX31_RS24390: EX31_RS24390 - antibiotic biosynthesis monooxygenase, at 645,559 to 645,846
_RS24390
EX31_RS24395: EX31_RS24395 - ribonuclease E, at 645,920 to 649,207
_RS24395
Position (kb) 644
645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 643.343 kb on + strand at 643.351 kb on - strand at 643.372 kb on - strand at 643.372 kb on - strand at 643.372 kb on - strand at 643.372 kb on - strand at 643.378 kb on - strand, within EX31_RS24375 at 643.378 kb on - strand, within EX31_RS24375 at 643.385 kb on - strand, within EX31_RS24375 at 643.421 kb on - strand, within EX31_RS24375 at 643.445 kb on - strand, within EX31_RS24375 at 643.448 kb on + strand, within EX31_RS24375 at 643.506 kb on + strand, within EX31_RS24375 at 643.506 kb on + strand, within EX31_RS24375 at 643.507 kb on - strand, within EX31_RS24375 at 643.517 kb on + strand, within EX31_RS24375 at 643.582 kb on + strand at 643.605 kb on + strand at 643.605 kb on + strand at 643.605 kb on + strand at 643.605 kb on + strand at 643.606 kb on - strand at 643.606 kb on - strand at 643.606 kb on - strand at 643.614 kb on + strand at 643.615 kb on - strand at 643.615 kb on - strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.616 kb on + strand at 643.617 kb on - strand at 643.617 kb on - strand at 643.617 kb on - strand at 643.621 kb on + strand at 643.621 kb on + strand at 643.622 kb on - strand at 643.665 kb on + strand at 643.695 kb on + strand at 643.737 kb on + strand at 643.905 kb on - strand at 643.908 kb on + strand at 643.909 kb on - strand at 643.909 kb on - strand at 644.060 kb on + strand, within EX31_RS24380 at 644.061 kb on - strand, within EX31_RS24380 at 644.118 kb on - strand, within EX31_RS24380 at 644.126 kb on + strand, within EX31_RS24380 at 644.181 kb on - strand at 644.204 kb on + strand at 644.204 kb on + strand at 644.205 kb on - strand at 644.205 kb on - strand at 644.287 kb on + strand at 644.288 kb on - strand at 644.288 kb on - strand at 644.384 kb on + strand at 644.500 kb on + strand, within EX31_RS24385 at 644.756 kb on - strand, within EX31_RS24385 at 644.776 kb on + strand, within EX31_RS24385 at 644.776 kb on + strand, within EX31_RS24385 at 644.777 kb on - strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.948 kb on + strand, within EX31_RS24385 at 644.949 kb on - strand, within EX31_RS24385 at 645.023 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.098 kb on - strand, within EX31_RS24385 at 645.122 kb on + strand, within EX31_RS24385 at 645.122 kb on + strand, within EX31_RS24385 at 645.147 kb on - strand, within EX31_RS24385 at 645.228 kb on + strand, within EX31_RS24385 at 645.284 kb on + strand at 645.285 kb on - strand at 645.416 kb on - strand at 645.421 kb on + strand at 645.448 kb on + strand at 645.458 kb on - strand at 645.501 kb on + strand at 645.529 kb on - strand at 645.635 kb on + strand, within EX31_RS24390 at 645.636 kb on - strand, within EX31_RS24390 at 645.659 kb on + strand, within EX31_RS24390 at 645.659 kb on + strand, within EX31_RS24390 at 645.659 kb on + strand, within EX31_RS24390 at 645.660 kb on - strand, within EX31_RS24390 at 645.673 kb on + strand, within EX31_RS24390 at 645.674 kb on - strand, within EX31_RS24390 at 645.696 kb on + strand, within EX31_RS24390 at 645.997 kb on + strand at 646.057 kb on - strand at 646.057 kb on - strand at 646.057 kb on - strand at 646.057 kb on - strand at 646.057 kb on - strand at 646.057 kb on - strand at 646.178 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 643,343 + +0.2 643,351 - +0.5 643,372 - -0.3 643,372 - +0.1 643,372 - -0.8 643,372 - -0.1 643,378 - EX31_RS24375 0.11 +1.1 643,378 - EX31_RS24375 0.11 +0.9 643,385 - EX31_RS24375 0.14 +0.1 643,421 - EX31_RS24375 0.28 -0.1 643,445 - EX31_RS24375 0.38 +0.5 643,448 + EX31_RS24375 0.39 -0.4 643,506 + EX31_RS24375 0.62 -0.0 643,506 + EX31_RS24375 0.62 -0.6 643,507 - EX31_RS24375 0.62 -0.7 643,517 + EX31_RS24375 0.66 +1.1 643,582 + +0.4 643,605 + +0.3 643,605 + -0.5 643,605 + +1.2 643,605 + +0.6 643,606 - -0.4 643,606 - -2.3 643,606 - -2.8 643,614 + +0.5 643,615 - +0.9 643,615 - +0.9 643,616 + +0.8 643,616 + -0.1 643,616 + -2.5 643,616 + -0.2 643,616 + +0.4 643,617 - +0.6 643,617 - -1.6 643,617 - -0.2 643,621 + -0.3 643,621 + -0.5 643,622 - -0.1 643,665 + -1.6 643,695 + +0.4 643,737 + +0.4 643,905 - +1.1 643,908 + -0.7 643,909 - +0.0 643,909 - +0.4 644,060 + EX31_RS24380 0.43 +0.7 644,061 - EX31_RS24380 0.44 -0.8 644,118 - EX31_RS24380 0.66 +0.5 644,126 + EX31_RS24380 0.69 -0.4 644,181 - +0.0 644,204 + -0.9 644,204 + +0.9 644,205 - -0.8 644,205 - +0.1 644,287 + -0.1 644,288 - -0.8 644,288 - -0.6 644,384 + -1.7 644,500 + EX31_RS24385 0.20 +0.7 644,756 - EX31_RS24385 0.45 -0.0 644,776 + EX31_RS24385 0.47 +0.2 644,776 + EX31_RS24385 0.47 -1.0 644,777 - EX31_RS24385 0.47 +0.9 644,948 + EX31_RS24385 0.63 +0.8 644,948 + EX31_RS24385 0.63 -1.0 644,948 + EX31_RS24385 0.63 -0.2 644,948 + EX31_RS24385 0.63 +0.2 644,949 - EX31_RS24385 0.63 +1.2 645,023 - EX31_RS24385 0.70 +0.5 645,098 - EX31_RS24385 0.77 +0.2 645,098 - EX31_RS24385 0.77 -0.1 645,098 - EX31_RS24385 0.77 +0.5 645,098 - EX31_RS24385 0.77 -0.6 645,122 + EX31_RS24385 0.80 -0.5 645,122 + EX31_RS24385 0.80 -1.0 645,147 - EX31_RS24385 0.82 +0.9 645,228 + EX31_RS24385 0.90 -1.2 645,284 + +0.6 645,285 - +0.1 645,416 - -1.4 645,421 + +0.6 645,448 + +1.1 645,458 - -0.9 645,501 + -1.4 645,529 - +0.1 645,635 + EX31_RS24390 0.26 -0.4 645,636 - EX31_RS24390 0.27 -0.2 645,659 + EX31_RS24390 0.35 -0.1 645,659 + EX31_RS24390 0.35 -0.7 645,659 + EX31_RS24390 0.35 +0.6 645,660 - EX31_RS24390 0.35 +1.1 645,673 + EX31_RS24390 0.40 -0.9 645,674 - EX31_RS24390 0.40 +0.7 645,696 + EX31_RS24390 0.48 +0.7 645,997 + +1.3 646,057 - +0.9 646,057 - -2.1 646,057 - -0.5 646,057 - +0.8 646,057 - +0.2 646,057 - +1.0 646,178 - +0.1
Or see this region's nucleotide sequence