Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24295 and EX31_RS24300 are separated by 666 nucleotides EX31_RS24300 and EX31_RS24305 are separated by 611 nucleotides
EX31_RS24295: EX31_RS24295 - hypothetical protein, at 624,617 to 624,844
_RS24295
EX31_RS24300: EX31_RS24300 - DUF2971 domain-containing protein, at 625,511 to 626,422
_RS24300
EX31_RS24305: EX31_RS24305 - VOC family protein, at 627,034 to 627,432
_RS24305
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2 at 624.798 kb on - strand, within EX31_RS24295 at 624.836 kb on + strand at 624.865 kb on + strand at 624.865 kb on + strand at 624.991 kb on - strand at 625.137 kb on + strand at 625.163 kb on - strand at 625.262 kb on - strand at 625.320 kb on - strand at 625.389 kb on + strand at 625.389 kb on + strand at 625.390 kb on - strand at 625.390 kb on - strand at 625.390 kb on - strand at 625.393 kb on + strand at 625.414 kb on + strand at 625.415 kb on - strand at 625.415 kb on - strand at 625.415 kb on - strand at 625.415 kb on - strand at 625.469 kb on - strand at 625.547 kb on - strand at 625.630 kb on + strand, within EX31_RS24300 at 625.869 kb on + strand, within EX31_RS24300 at 626.098 kb on + strand, within EX31_RS24300 at 626.189 kb on - strand, within EX31_RS24300 at 626.224 kb on + strand, within EX31_RS24300 at 626.260 kb on - strand, within EX31_RS24300 at 626.558 kb on + strand at 626.558 kb on + strand at 626.558 kb on + strand at 626.558 kb on + strand at 626.565 kb on + strand at 626.601 kb on + strand at 626.601 kb on + strand at 626.604 kb on + strand at 626.605 kb on - strand at 626.605 kb on - strand at 626.607 kb on + strand at 626.607 kb on + strand at 626.632 kb on - strand at 626.693 kb on + strand at 626.697 kb on + strand at 626.697 kb on + strand at 626.698 kb on - strand at 626.728 kb on + strand at 626.728 kb on + strand at 626.728 kb on + strand at 626.737 kb on + strand at 626.737 kb on + strand at 626.754 kb on + strand at 626.754 kb on + strand at 626.754 kb on + strand at 626.755 kb on - strand at 626.758 kb on + strand at 626.758 kb on + strand at 626.759 kb on - strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.810 kb on - strand at 626.927 kb on + strand at 626.927 kb on + strand at 626.929 kb on + strand at 626.971 kb on + strand at 627.042 kb on - strand at 627.054 kb on - strand at 627.103 kb on + strand, within EX31_RS24305 at 627.104 kb on - strand, within EX31_RS24305 at 627.142 kb on - strand, within EX31_RS24305 at 627.208 kb on - strand, within EX31_RS24305 at 627.268 kb on + strand, within EX31_RS24305 at 627.268 kb on + strand, within EX31_RS24305 at 627.268 kb on + strand, within EX31_RS24305 at 627.269 kb on - strand, within EX31_RS24305 at 627.269 kb on - strand, within EX31_RS24305 at 627.270 kb on + strand, within EX31_RS24305 at 627.345 kb on + strand, within EX31_RS24305 at 627.384 kb on + strand, within EX31_RS24305 at 627.396 kb on + strand at 627.396 kb on + strand at 627.396 kb on + strand at 627.396 kb on + strand at 627.397 kb on - strand at 627.397 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 624,798 - EX31_RS24295 0.79 -0.8 624,836 + +1.8 624,865 + -0.5 624,865 + -0.0 624,991 - -1.5 625,137 + -0.5 625,163 - -1.0 625,262 - +0.1 625,320 - -0.4 625,389 + +1.4 625,389 + +0.7 625,390 - +0.6 625,390 - -0.2 625,390 - +0.3 625,393 + +0.4 625,414 + +1.6 625,415 - +1.0 625,415 - +2.1 625,415 - +0.8 625,415 - -0.4 625,469 - -0.2 625,547 - +0.8 625,630 + EX31_RS24300 0.13 -0.8 625,869 + EX31_RS24300 0.39 -0.0 626,098 + EX31_RS24300 0.64 -1.2 626,189 - EX31_RS24300 0.74 -1.0 626,224 + EX31_RS24300 0.78 -0.9 626,260 - EX31_RS24300 0.82 -0.0 626,558 + +0.7 626,558 + +0.6 626,558 + +0.4 626,558 + +1.1 626,565 + +0.7 626,601 + -0.5 626,601 + -0.6 626,604 + +0.5 626,605 - -1.1 626,605 - -0.9 626,607 + +1.0 626,607 + +0.1 626,632 - -1.3 626,693 + -1.2 626,697 + +1.2 626,697 + +0.1 626,698 - +0.0 626,728 + +0.5 626,728 + -0.3 626,728 + +0.5 626,737 + +0.1 626,737 + -0.3 626,754 + +0.8 626,754 + -0.1 626,754 + -0.1 626,755 - -0.0 626,758 + -0.0 626,758 + -2.4 626,759 - +0.7 626,809 + -0.8 626,809 + +0.4 626,809 + +0.1 626,809 + -0.4 626,809 + +0.5 626,809 + -0.3 626,809 + -1.5 626,809 + +0.7 626,809 + +0.6 626,809 + -0.4 626,809 + +0.7 626,809 + +0.2 626,809 + +1.9 626,809 + +0.9 626,809 + +1.5 626,809 + -0.6 626,809 + +0.5 626,809 + -0.4 626,809 + +0.6 626,810 - +0.7 626,927 + +0.5 626,927 + -0.2 626,929 + -0.1 626,971 + -0.0 627,042 - +0.7 627,054 - -1.2 627,103 + EX31_RS24305 0.17 -0.0 627,104 - EX31_RS24305 0.18 -0.5 627,142 - EX31_RS24305 0.27 +0.4 627,208 - EX31_RS24305 0.44 +0.4 627,268 + EX31_RS24305 0.59 -1.9 627,268 + EX31_RS24305 0.59 -1.1 627,268 + EX31_RS24305 0.59 +0.5 627,269 - EX31_RS24305 0.59 +0.6 627,269 - EX31_RS24305 0.59 -0.6 627,270 + EX31_RS24305 0.59 -0.7 627,345 + EX31_RS24305 0.78 -0.2 627,384 + EX31_RS24305 0.88 -1.0 627,396 + -1.3 627,396 + +0.6 627,396 + +0.7 627,396 + -0.5 627,397 - +1.0 627,397 - +0.2
Or see this region's nucleotide sequence