Strain Fitness in Rahnella sp. WP5 around EX31_RS23060

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS23055 and EX31_RS23060 are separated by 210 nucleotidesEX31_RS23060 and EX31_RS23065 are separated by 46 nucleotides EX31_RS23055: EX31_RS23055 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 372,684 to 374,030 _RS23055 EX31_RS23060: EX31_RS23060 - nitrate ABC transporter substrate-binding protein, at 374,241 to 375,197 _RS23060 EX31_RS23065: EX31_RS23065 - deaminated glutathione amidase, at 375,244 to 376,038 _RS23065 Position (kb) 374 375 376Strain fitness (log2 ratio) -2 -1 0 1 2at 373.267 kb on + strand, within EX31_RS23055at 373.268 kb on - strand, within EX31_RS23055at 373.268 kb on - strand, within EX31_RS23055at 373.307 kb on + strand, within EX31_RS23055at 373.308 kb on - strand, within EX31_RS23055at 373.609 kb on + strand, within EX31_RS23055at 373.610 kb on - strand, within EX31_RS23055at 373.709 kb on + strand, within EX31_RS23055at 373.709 kb on + strand, within EX31_RS23055at 373.709 kb on + strand, within EX31_RS23055at 373.709 kb on + strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.710 kb on - strand, within EX31_RS23055at 373.902 kb on - strandat 373.974 kb on + strandat 374.067 kb on + strandat 374.087 kb on + strandat 374.088 kb on - strandat 374.091 kb on - strandat 374.100 kb on - strandat 374.120 kb on + strandat 374.149 kb on + strandat 374.149 kb on + strandat 374.149 kb on + strandat 374.149 kb on + strandat 374.149 kb on + strandat 374.149 kb on + strandat 374.150 kb on - strandat 374.150 kb on - strandat 374.153 kb on - strandat 374.153 kb on - strandat 374.209 kb on + strandat 374.209 kb on + strandat 374.210 kb on - strandat 374.213 kb on - strandat 374.213 kb on - strandat 374.213 kb on - strandat 374.228 kb on + strandat 374.228 kb on + strandat 374.228 kb on + strandat 374.228 kb on + strandat 374.228 kb on + strandat 374.228 kb on + strandat 374.229 kb on - strandat 374.229 kb on - strandat 374.229 kb on - strandat 374.229 kb on - strandat 374.249 kb on + strandat 374.250 kb on - strandat 374.250 kb on - strandat 374.281 kb on - strandat 374.300 kb on - strandat 374.335 kb on + strandat 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.382 kb on + strand, within EX31_RS23060at 374.383 kb on - strand, within EX31_RS23060at 374.383 kb on - strand, within EX31_RS23060at 374.530 kb on - strand, within EX31_RS23060at 374.640 kb on + strand, within EX31_RS23060at 374.640 kb on + strand, within EX31_RS23060at 374.640 kb on + strand, within EX31_RS23060at 374.641 kb on - strand, within EX31_RS23060at 374.735 kb on + strand, within EX31_RS23060at 374.735 kb on + strand, within EX31_RS23060at 374.736 kb on - strand, within EX31_RS23060at 374.749 kb on + strand, within EX31_RS23060at 374.750 kb on - strand, within EX31_RS23060at 374.773 kb on + strand, within EX31_RS23060at 374.777 kb on + strand, within EX31_RS23060at 374.777 kb on + strand, within EX31_RS23060at 374.777 kb on + strand, within EX31_RS23060at 374.778 kb on - strand, within EX31_RS23060at 374.786 kb on + strand, within EX31_RS23060at 374.787 kb on - strand, within EX31_RS23060at 374.862 kb on + strand, within EX31_RS23060at 374.880 kb on + strand, within EX31_RS23060at 374.880 kb on + strand, within EX31_RS23060at 374.976 kb on + strand, within EX31_RS23060at 374.976 kb on + strand, within EX31_RS23060at 374.976 kb on + strand, within EX31_RS23060at 374.993 kb on + strand, within EX31_RS23060at 375.006 kb on + strand, within EX31_RS23060at 375.040 kb on + strand, within EX31_RS23060at 375.040 kb on + strand, within EX31_RS23060at 375.130 kb on + strandat 375.130 kb on + strandat 375.130 kb on + strandat 375.196 kb on - strandat 375.202 kb on + strandat 375.222 kb on + strandat 375.222 kb on + strandat 375.222 kb on + strandat 375.222 kb on + strandat 375.257 kb on + strandat 375.257 kb on + strandat 375.257 kb on + strandat 375.258 kb on - strandat 375.258 kb on - strandat 375.258 kb on - strandat 375.258 kb on - strandat 375.291 kb on + strandat 375.291 kb on + strandat 375.520 kb on + strand, within EX31_RS23065at 375.520 kb on + strand, within EX31_RS23065at 375.522 kb on + strand, within EX31_RS23065at 375.522 kb on + strand, within EX31_RS23065at 375.523 kb on - strand, within EX31_RS23065at 375.555 kb on + strand, within EX31_RS23065at 375.584 kb on - strand, within EX31_RS23065at 375.635 kb on + strand, within EX31_RS23065at 375.636 kb on - strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.832 kb on + strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.833 kb on - strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.834 kb on + strand, within EX31_RS23065at 375.835 kb on - strand, within EX31_RS23065at 375.835 kb on - strand, within EX31_RS23065at 375.835 kb on - strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 375.879 kb on + strand, within EX31_RS23065at 376.085 kb on + strandat 376.123 kb on + strandat 376.137 kb on + strandat 376.171 kb on + strandat 376.171 kb on + strandat 376.172 kb on - strandat 376.180 kb on + strandat 376.180 kb on + strandat 376.180 kb on + strandat 376.180 kb on + strandat 376.181 kb on - strandat 376.197 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
remove
373,267 + EX31_RS23055 0.43 +2.3
373,268 - EX31_RS23055 0.43 -0.1
373,268 - EX31_RS23055 0.43 -0.5
373,307 + EX31_RS23055 0.46 -0.2
373,308 - EX31_RS23055 0.46 +1.5
373,609 + EX31_RS23055 0.69 -0.3
373,610 - EX31_RS23055 0.69 +0.4
373,709 + EX31_RS23055 0.76 +1.0
373,709 + EX31_RS23055 0.76 +1.0
373,709 + EX31_RS23055 0.76 +0.7
373,709 + EX31_RS23055 0.76 +0.4
373,710 - EX31_RS23055 0.76 +0.0
373,710 - EX31_RS23055 0.76 -1.0
373,710 - EX31_RS23055 0.76 +0.0
373,710 - EX31_RS23055 0.76 -1.2
373,710 - EX31_RS23055 0.76 +0.7
373,710 - EX31_RS23055 0.76 -0.1
373,710 - EX31_RS23055 0.76 -0.3
373,710 - EX31_RS23055 0.76 +0.3
373,710 - EX31_RS23055 0.76 +1.1
373,902 - -0.9
373,974 + +0.4
374,067 + +0.8
374,087 + -0.2
374,088 - -0.2
374,091 - -0.1
374,100 - +0.1
374,120 + +0.8
374,149 + +0.5
374,149 + +0.6
374,149 + -0.1
374,149 + +0.9
374,149 + +1.2
374,149 + -0.2
374,150 - +1.6
374,150 - +0.3
374,153 - +0.9
374,153 - -0.4
374,209 + +1.1
374,209 + +0.2
374,210 - -0.0
374,213 - +0.6
374,213 - -0.0
374,213 - -2.2
374,228 + -0.1
374,228 + -1.5
374,228 + -0.1
374,228 + -0.8
374,228 + +0.4
374,228 + +0.9
374,229 - +1.4
374,229 - -1.8
374,229 - +1.2
374,229 - -0.9
374,249 + -0.1
374,250 - +0.1
374,250 - -0.0
374,281 - +0.9
374,300 - +0.2
374,335 + +0.4
374,382 + EX31_RS23060 0.15 -0.4
374,382 + EX31_RS23060 0.15 +0.4
374,382 + EX31_RS23060 0.15 +1.1
374,382 + EX31_RS23060 0.15 +0.4
374,382 + EX31_RS23060 0.15 -0.0
374,382 + EX31_RS23060 0.15 +0.5
374,382 + EX31_RS23060 0.15 +0.5
374,382 + EX31_RS23060 0.15 -0.8
374,382 + EX31_RS23060 0.15 +0.1
374,382 + EX31_RS23060 0.15 -0.7
374,383 - EX31_RS23060 0.15 +0.4
374,383 - EX31_RS23060 0.15 +1.0
374,530 - EX31_RS23060 0.30 -1.6
374,640 + EX31_RS23060 0.42 +1.1
374,640 + EX31_RS23060 0.42 -0.4
374,640 + EX31_RS23060 0.42 -2.6
374,641 - EX31_RS23060 0.42 +0.1
374,735 + EX31_RS23060 0.52 -0.5
374,735 + EX31_RS23060 0.52 +0.0
374,736 - EX31_RS23060 0.52 +0.2
374,749 + EX31_RS23060 0.53 -0.4
374,750 - EX31_RS23060 0.53 -1.7
374,773 + EX31_RS23060 0.56 +0.2
374,777 + EX31_RS23060 0.56 -0.2
374,777 + EX31_RS23060 0.56 -0.1
374,777 + EX31_RS23060 0.56 +0.2
374,778 - EX31_RS23060 0.56 +0.4
374,786 + EX31_RS23060 0.57 +0.9
374,787 - EX31_RS23060 0.57 -0.4
374,862 + EX31_RS23060 0.65 +0.1
374,880 + EX31_RS23060 0.67 +1.2
374,880 + EX31_RS23060 0.67 +0.0
374,976 + EX31_RS23060 0.77 -0.0
374,976 + EX31_RS23060 0.77 -0.2
374,976 + EX31_RS23060 0.77 +0.4
374,993 + EX31_RS23060 0.79 +0.0
375,006 + EX31_RS23060 0.80 +0.9
375,040 + EX31_RS23060 0.83 +1.1
375,040 + EX31_RS23060 0.83 +0.7
375,130 + +1.2
375,130 + +1.0
375,130 + -0.3
375,196 - -1.0
375,202 + +0.1
375,222 + +0.6
375,222 + +1.0
375,222 + +1.7
375,222 + -0.3
375,257 + -0.6
375,257 + +0.1
375,257 + -0.6
375,258 - +0.3
375,258 - -1.9
375,258 - +0.8
375,258 - -1.2
375,291 + -0.7
375,291 + -0.3
375,520 + EX31_RS23065 0.35 -0.9
375,520 + EX31_RS23065 0.35 -0.1
375,522 + EX31_RS23065 0.35 +1.1
375,522 + EX31_RS23065 0.35 -0.6
375,523 - EX31_RS23065 0.35 -0.2
375,555 + EX31_RS23065 0.39 +0.0
375,584 - EX31_RS23065 0.43 -0.3
375,635 + EX31_RS23065 0.49 -0.1
375,636 - EX31_RS23065 0.49 +0.2
375,832 + EX31_RS23065 0.74 -0.6
375,832 + EX31_RS23065 0.74 -0.2
375,832 + EX31_RS23065 0.74 +0.7
375,832 + EX31_RS23065 0.74 +0.9
375,832 + EX31_RS23065 0.74 -0.2
375,832 + EX31_RS23065 0.74 +0.5
375,832 + EX31_RS23065 0.74 +1.3
375,832 + EX31_RS23065 0.74 +0.8
375,832 + EX31_RS23065 0.74 +0.6
375,832 + EX31_RS23065 0.74 +0.3
375,832 + EX31_RS23065 0.74 +0.5
375,832 + EX31_RS23065 0.74 +1.0
375,832 + EX31_RS23065 0.74 +0.0
375,832 + EX31_RS23065 0.74 +0.4
375,832 + EX31_RS23065 0.74 +1.3
375,832 + EX31_RS23065 0.74 +0.2
375,832 + EX31_RS23065 0.74 +0.7
375,832 + EX31_RS23065 0.74 -0.0
375,832 + EX31_RS23065 0.74 -0.2
375,832 + EX31_RS23065 0.74 +0.4
375,832 + EX31_RS23065 0.74 +0.6
375,832 + EX31_RS23065 0.74 +0.1
375,832 + EX31_RS23065 0.74 +0.2
375,832 + EX31_RS23065 0.74 +1.2
375,832 + EX31_RS23065 0.74 +0.4
375,832 + EX31_RS23065 0.74 +0.4
375,832 + EX31_RS23065 0.74 +0.7
375,832 + EX31_RS23065 0.74 +0.0
375,832 + EX31_RS23065 0.74 +0.6
375,832 + EX31_RS23065 0.74 -0.7
375,833 - EX31_RS23065 0.74 -0.3
375,833 - EX31_RS23065 0.74 +0.7
375,833 - EX31_RS23065 0.74 -0.3
375,833 - EX31_RS23065 0.74 +1.5
375,833 - EX31_RS23065 0.74 -1.2
375,833 - EX31_RS23065 0.74 +0.2
375,833 - EX31_RS23065 0.74 +0.3
375,833 - EX31_RS23065 0.74 -0.3
375,833 - EX31_RS23065 0.74 +0.4
375,833 - EX31_RS23065 0.74 -0.2
375,833 - EX31_RS23065 0.74 -0.2
375,834 + EX31_RS23065 0.74 +0.4
375,834 + EX31_RS23065 0.74 +0.1
375,834 + EX31_RS23065 0.74 +0.4
375,834 + EX31_RS23065 0.74 +0.5
375,835 - EX31_RS23065 0.74 +0.3
375,835 - EX31_RS23065 0.74 -1.6
375,835 - EX31_RS23065 0.74 +0.8
375,879 + EX31_RS23065 0.80 +0.3
375,879 + EX31_RS23065 0.80 -0.8
375,879 + EX31_RS23065 0.80 +0.1
375,879 + EX31_RS23065 0.80 -0.1
375,879 + EX31_RS23065 0.80 +1.2
375,879 + EX31_RS23065 0.80 +0.8
376,085 + +0.8
376,123 + +0.2
376,137 + -0.0
376,171 + -1.0
376,171 + +0.2
376,172 - +0.8
376,180 + +0.5
376,180 + +0.1
376,180 + -0.3
376,180 + +0.1
376,181 - -0.2
376,197 + -0.2

Or see this region's nucleotide sequence