Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22250 and EX31_RS22255 are separated by 191 nucleotides EX31_RS22255 and EX31_RS22260 are separated by 216 nucleotides EX31_RS22260 and EX31_RS22265 are separated by 164 nucleotides
EX31_RS22250: EX31_RS22250 - ATP-dependent protease ATP-binding subunit ClpX, at 199,831 to 201,105
_RS22250
EX31_RS22255: EX31_RS22255 - endopeptidase La, at 201,297 to 203,651
_RS22255
EX31_RS22260: EX31_RS22260 - DNA-binding protein HU-beta, at 203,868 to 204,143
_RS22260
EX31_RS22265: EX31_RS22265 - peptidylprolyl isomerase, at 204,308 to 206,188
_RS22265
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 200.374 kb on + strand, within EX31_RS22250 at 200.374 kb on + strand, within EX31_RS22250 at 200.374 kb on + strand, within EX31_RS22250 at 200.450 kb on + strand, within EX31_RS22250 at 200.450 kb on + strand, within EX31_RS22250 at 200.472 kb on + strand, within EX31_RS22250 at 200.514 kb on + strand, within EX31_RS22250 at 200.514 kb on + strand, within EX31_RS22250 at 200.514 kb on + strand, within EX31_RS22250 at 200.514 kb on + strand, within EX31_RS22250 at 200.547 kb on + strand, within EX31_RS22250 at 200.625 kb on + strand, within EX31_RS22250 at 200.687 kb on + strand, within EX31_RS22250 at 200.744 kb on + strand, within EX31_RS22250 at 200.744 kb on + strand, within EX31_RS22250 at 200.744 kb on + strand, within EX31_RS22250 at 200.839 kb on + strand, within EX31_RS22250 at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 200.983 kb on + strand at 201.067 kb on + strand at 201.067 kb on + strand at 201.108 kb on - strand at 201.128 kb on + strand at 201.177 kb on + strand at 201.206 kb on + strand at 201.206 kb on + strand at 201.206 kb on + strand at 201.206 kb on + strand at 201.206 kb on + strand at 201.208 kb on + strand at 201.208 kb on + strand at 201.208 kb on + strand at 201.208 kb on + strand at 201.208 kb on + strand at 201.208 kb on + strand at 201.209 kb on - strand at 201.209 kb on - strand at 201.209 kb on - strand at 201.278 kb on + strand at 201.283 kb on + strand at 201.283 kb on + strand at 201.283 kb on + strand at 201.283 kb on + strand at 201.296 kb on + strand at 201.296 kb on + strand at 201.526 kb on + strand at 201.529 kb on + strand at 201.529 kb on + strand at 201.529 kb on + strand at 201.529 kb on + strand at 201.529 kb on + strand at 201.580 kb on + strand, within EX31_RS22255 at 201.580 kb on + strand, within EX31_RS22255 at 201.580 kb on + strand, within EX31_RS22255 at 201.593 kb on + strand, within EX31_RS22255 at 201.594 kb on - strand, within EX31_RS22255 at 201.692 kb on + strand, within EX31_RS22255 at 201.717 kb on + strand, within EX31_RS22255 at 201.717 kb on + strand, within EX31_RS22255 at 201.717 kb on + strand, within EX31_RS22255 at 201.717 kb on + strand, within EX31_RS22255 at 201.717 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.812 kb on + strand, within EX31_RS22255 at 201.813 kb on - strand, within EX31_RS22255 at 201.879 kb on + strand, within EX31_RS22255 at 201.981 kb on + strand, within EX31_RS22255 at 201.981 kb on + strand, within EX31_RS22255 at 201.981 kb on + strand, within EX31_RS22255 at 201.981 kb on + strand, within EX31_RS22255 at 201.981 kb on + strand, within EX31_RS22255 at 202.160 kb on + strand, within EX31_RS22255 at 202.160 kb on + strand, within EX31_RS22255 at 202.160 kb on + strand, within EX31_RS22255 at 202.176 kb on + strand, within EX31_RS22255 at 202.176 kb on + strand, within EX31_RS22255 at 202.176 kb on + strand, within EX31_RS22255 at 202.176 kb on + strand, within EX31_RS22255 at 202.176 kb on + strand, within EX31_RS22255 at 202.176 kb on + strand, within EX31_RS22255 at 202.177 kb on - strand, within EX31_RS22255 at 202.178 kb on + strand, within EX31_RS22255 at 202.178 kb on + strand, within EX31_RS22255 at 202.178 kb on + strand, within EX31_RS22255 at 202.178 kb on + strand, within EX31_RS22255 at 202.269 kb on + strand, within EX31_RS22255 at 202.269 kb on + strand, within EX31_RS22255 at 202.305 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.425 kb on + strand, within EX31_RS22255 at 202.426 kb on - strand, within EX31_RS22255 at 202.450 kb on + strand, within EX31_RS22255 at 202.484 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.488 kb on + strand, within EX31_RS22255 at 202.489 kb on - strand, within EX31_RS22255 at 202.489 kb on - strand, within EX31_RS22255 at 202.489 kb on - strand, within EX31_RS22255 at 202.589 kb on + strand, within EX31_RS22255 at 202.624 kb on + strand, within EX31_RS22255 at 202.748 kb on + strand, within EX31_RS22255 at 202.749 kb on - strand, within EX31_RS22255 at 202.835 kb on + strand, within EX31_RS22255 at 202.835 kb on + strand, within EX31_RS22255 at 202.835 kb on + strand, within EX31_RS22255 at 202.835 kb on + strand, within EX31_RS22255 at 202.836 kb on - strand, within EX31_RS22255 at 202.899 kb on + strand, within EX31_RS22255 at 202.900 kb on - strand, within EX31_RS22255 at 202.900 kb on - strand, within EX31_RS22255 at 202.900 kb on - strand, within EX31_RS22255 at 202.918 kb on + strand, within EX31_RS22255 at 202.918 kb on + strand, within EX31_RS22255 at 202.918 kb on + strand, within EX31_RS22255 at 202.918 kb on + strand, within EX31_RS22255 at 202.918 kb on + strand, within EX31_RS22255 at 202.918 kb on + strand, within EX31_RS22255 at 202.922 kb on + strand, within EX31_RS22255 at 202.922 kb on + strand, within EX31_RS22255 at 202.922 kb on + strand, within EX31_RS22255 at 202.955 kb on + strand, within EX31_RS22255 at 203.162 kb on + strand, within EX31_RS22255 at 203.162 kb on + strand, within EX31_RS22255 at 203.172 kb on + strand, within EX31_RS22255 at 203.172 kb on + strand, within EX31_RS22255 at 203.299 kb on + strand, within EX31_RS22255 at 203.351 kb on + strand, within EX31_RS22255 at 203.351 kb on + strand, within EX31_RS22255 at 203.622 kb on + strand at 203.663 kb on + strand at 203.663 kb on + strand at 203.664 kb on - strand at 203.733 kb on + strand at 203.733 kb on + strand at 203.734 kb on - strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.795 kb on + strand at 203.796 kb on - strand at 203.796 kb on - strand at 203.797 kb on + strand at 203.850 kb on + strand at 203.863 kb on + strand at 203.863 kb on + strand at 203.863 kb on + strand at 203.864 kb on - strand at 203.864 kb on - strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.873 kb on + strand at 203.874 kb on - strand at 203.941 kb on + strand, within EX31_RS22260 at 203.941 kb on + strand, within EX31_RS22260 at 203.941 kb on + strand, within EX31_RS22260 at 203.941 kb on + strand, within EX31_RS22260 at 203.942 kb on - strand, within EX31_RS22260 at 203.992 kb on + strand, within EX31_RS22260 at 203.992 kb on + strand, within EX31_RS22260 at 204.041 kb on + strand, within EX31_RS22260 at 204.042 kb on - strand, within EX31_RS22260 at 204.113 kb on + strand, within EX31_RS22260 at 204.113 kb on + strand, within EX31_RS22260 at 204.113 kb on + strand, within EX31_RS22260 at 204.114 kb on - strand, within EX31_RS22260 at 204.145 kb on + strand at 204.220 kb on - strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.246 kb on + strand at 204.247 kb on - strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.251 kb on + strand at 204.307 kb on + strand at 204.308 kb on - strand at 204.308 kb on - strand at 204.321 kb on + strand at 204.370 kb on + strand at 204.382 kb on + strand at 204.382 kb on + strand at 204.404 kb on + strand at 204.404 kb on + strand at 204.404 kb on + strand at 204.404 kb on + strand at 204.405 kb on - strand at 204.428 kb on + strand at 204.428 kb on + strand at 204.456 kb on + strand at 204.556 kb on + strand, within EX31_RS22265 at 204.556 kb on + strand, within EX31_RS22265 at 204.556 kb on + strand, within EX31_RS22265 at 204.618 kb on - strand, within EX31_RS22265
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 200,374 + EX31_RS22250 0.43 +1.8 200,374 + EX31_RS22250 0.43 +0.0 200,374 + EX31_RS22250 0.43 +1.4 200,450 + EX31_RS22250 0.49 -0.2 200,450 + EX31_RS22250 0.49 +2.8 200,472 + EX31_RS22250 0.50 +1.6 200,514 + EX31_RS22250 0.54 +1.8 200,514 + EX31_RS22250 0.54 +1.2 200,514 + EX31_RS22250 0.54 +2.8 200,514 + EX31_RS22250 0.54 -1.0 200,547 + EX31_RS22250 0.56 +0.5 200,625 + EX31_RS22250 0.62 -1.3 200,687 + EX31_RS22250 0.67 +3.0 200,744 + EX31_RS22250 0.72 +1.5 200,744 + EX31_RS22250 0.72 +1.8 200,744 + EX31_RS22250 0.72 +0.8 200,839 + EX31_RS22250 0.79 -0.3 200,983 + +1.8 200,983 + +2.8 200,983 + +3.2 200,983 + +3.8 200,983 + +0.8 200,983 + +2.8 200,983 + +0.5 200,983 + +1.5 200,983 + +1.8 200,983 + -0.3 200,983 + -0.5 200,983 + +2.8 201,067 + -1.0 201,067 + +0.0 201,108 - +0.7 201,128 + -0.7 201,177 + -1.4 201,206 + +1.0 201,206 + +0.3 201,206 + +0.4 201,206 + -0.1 201,206 + -1.5 201,208 + +2.3 201,208 + +0.0 201,208 + +1.9 201,208 + -1.7 201,208 + +0.4 201,208 + -0.4 201,209 - +1.2 201,209 - +1.0 201,209 - -1.3 201,278 + -1.0 201,283 + -0.4 201,283 + -0.1 201,283 + -0.2 201,283 + -1.1 201,296 + -0.3 201,296 + +0.3 201,526 + -0.5 201,529 + +0.8 201,529 + +0.2 201,529 + -0.4 201,529 + +0.8 201,529 + -0.4 201,580 + EX31_RS22255 0.12 +0.5 201,580 + EX31_RS22255 0.12 -2.0 201,580 + EX31_RS22255 0.12 +0.6 201,593 + EX31_RS22255 0.13 -0.8 201,594 - EX31_RS22255 0.13 -1.8 201,692 + EX31_RS22255 0.17 -1.0 201,717 + EX31_RS22255 0.18 -0.5 201,717 + EX31_RS22255 0.18 -0.2 201,717 + EX31_RS22255 0.18 -0.8 201,717 + EX31_RS22255 0.18 +0.1 201,717 + EX31_RS22255 0.18 -0.9 201,812 + EX31_RS22255 0.22 -0.2 201,812 + EX31_RS22255 0.22 +0.6 201,812 + EX31_RS22255 0.22 -0.0 201,812 + EX31_RS22255 0.22 +0.9 201,812 + EX31_RS22255 0.22 -1.2 201,812 + EX31_RS22255 0.22 -1.7 201,812 + EX31_RS22255 0.22 -2.2 201,812 + EX31_RS22255 0.22 -1.1 201,812 + EX31_RS22255 0.22 +0.5 201,812 + EX31_RS22255 0.22 -0.8 201,812 + EX31_RS22255 0.22 -0.0 201,812 + EX31_RS22255 0.22 -0.3 201,813 - EX31_RS22255 0.22 +0.7 201,879 + EX31_RS22255 0.25 -1.4 201,981 + EX31_RS22255 0.29 +0.5 201,981 + EX31_RS22255 0.29 -0.7 201,981 + EX31_RS22255 0.29 -1.3 201,981 + EX31_RS22255 0.29 -0.9 201,981 + EX31_RS22255 0.29 -1.0 202,160 + EX31_RS22255 0.37 +0.0 202,160 + EX31_RS22255 0.37 -0.1 202,160 + EX31_RS22255 0.37 +0.3 202,176 + EX31_RS22255 0.37 -0.8 202,176 + EX31_RS22255 0.37 +0.1 202,176 + EX31_RS22255 0.37 -1.7 202,176 + EX31_RS22255 0.37 -0.5 202,176 + EX31_RS22255 0.37 -2.5 202,176 + EX31_RS22255 0.37 -0.6 202,177 - EX31_RS22255 0.37 +0.9 202,178 + EX31_RS22255 0.37 +0.3 202,178 + EX31_RS22255 0.37 -0.9 202,178 + EX31_RS22255 0.37 -1.5 202,178 + EX31_RS22255 0.37 +0.2 202,269 + EX31_RS22255 0.41 -0.3 202,269 + EX31_RS22255 0.41 -0.0 202,305 + EX31_RS22255 0.43 -1.6 202,425 + EX31_RS22255 0.48 -0.9 202,425 + EX31_RS22255 0.48 -2.5 202,425 + EX31_RS22255 0.48 +1.6 202,425 + EX31_RS22255 0.48 -0.1 202,425 + EX31_RS22255 0.48 +0.6 202,425 + EX31_RS22255 0.48 -1.1 202,425 + EX31_RS22255 0.48 +0.2 202,425 + EX31_RS22255 0.48 +0.0 202,426 - EX31_RS22255 0.48 -1.0 202,450 + EX31_RS22255 0.49 -0.3 202,484 + EX31_RS22255 0.50 -0.4 202,488 + EX31_RS22255 0.51 -0.7 202,488 + EX31_RS22255 0.51 +0.5 202,488 + EX31_RS22255 0.51 -0.2 202,488 + EX31_RS22255 0.51 -2.8 202,488 + EX31_RS22255 0.51 +0.4 202,488 + EX31_RS22255 0.51 -0.7 202,488 + EX31_RS22255 0.51 -1.6 202,488 + EX31_RS22255 0.51 -0.2 202,488 + EX31_RS22255 0.51 -0.1 202,488 + EX31_RS22255 0.51 -1.0 202,488 + EX31_RS22255 0.51 -0.1 202,488 + EX31_RS22255 0.51 +0.3 202,488 + EX31_RS22255 0.51 +0.2 202,488 + EX31_RS22255 0.51 +0.4 202,489 - EX31_RS22255 0.51 -1.7 202,489 - EX31_RS22255 0.51 -1.2 202,489 - EX31_RS22255 0.51 +0.1 202,589 + EX31_RS22255 0.55 +0.3 202,624 + EX31_RS22255 0.56 -2.2 202,748 + EX31_RS22255 0.62 -1.8 202,749 - EX31_RS22255 0.62 -0.2 202,835 + EX31_RS22255 0.65 -0.2 202,835 + EX31_RS22255 0.65 -0.4 202,835 + EX31_RS22255 0.65 -0.8 202,835 + EX31_RS22255 0.65 -1.0 202,836 - EX31_RS22255 0.65 -1.5 202,899 + EX31_RS22255 0.68 -0.2 202,900 - EX31_RS22255 0.68 +1.7 202,900 - EX31_RS22255 0.68 +0.5 202,900 - EX31_RS22255 0.68 -1.2 202,918 + EX31_RS22255 0.69 -0.9 202,918 + EX31_RS22255 0.69 -1.0 202,918 + EX31_RS22255 0.69 -1.1 202,918 + EX31_RS22255 0.69 +1.5 202,918 + EX31_RS22255 0.69 -0.4 202,918 + EX31_RS22255 0.69 -0.6 202,922 + EX31_RS22255 0.69 -0.1 202,922 + EX31_RS22255 0.69 -0.1 202,922 + EX31_RS22255 0.69 +1.5 202,955 + EX31_RS22255 0.70 +0.9 203,162 + EX31_RS22255 0.79 +1.1 203,162 + EX31_RS22255 0.79 +0.6 203,172 + EX31_RS22255 0.80 -0.4 203,172 + EX31_RS22255 0.80 -1.1 203,299 + EX31_RS22255 0.85 -0.2 203,351 + EX31_RS22255 0.87 -0.2 203,351 + EX31_RS22255 0.87 -1.2 203,622 + -0.5 203,663 + +0.2 203,663 + +0.3 203,664 - -0.0 203,733 + -0.2 203,733 + +0.4 203,734 - +0.9 203,795 + +0.4 203,795 + +0.0 203,795 + -0.1 203,795 + -0.3 203,795 + -0.1 203,795 + +0.6 203,795 + +0.6 203,796 - -1.7 203,796 - -0.1 203,797 + -0.1 203,850 + -0.8 203,863 + +0.3 203,863 + -0.0 203,863 + -0.0 203,864 - -0.4 203,864 - +0.1 203,873 + +0.1 203,873 + -0.6 203,873 + +0.5 203,873 + +0.8 203,873 + +0.2 203,874 - +0.2 203,941 + EX31_RS22260 0.26 -0.1 203,941 + EX31_RS22260 0.26 +0.8 203,941 + EX31_RS22260 0.26 -1.9 203,941 + EX31_RS22260 0.26 +0.4 203,942 - EX31_RS22260 0.27 +0.5 203,992 + EX31_RS22260 0.45 +0.6 203,992 + EX31_RS22260 0.45 +0.5 204,041 + EX31_RS22260 0.63 +0.0 204,042 - EX31_RS22260 0.63 +0.0 204,113 + EX31_RS22260 0.89 +0.1 204,113 + EX31_RS22260 0.89 -0.1 204,113 + EX31_RS22260 0.89 +1.0 204,114 - EX31_RS22260 0.89 +0.2 204,145 + -0.2 204,220 - +0.8 204,246 + -0.0 204,246 + -0.5 204,246 + -0.3 204,246 + +0.1 204,246 + -0.2 204,246 + +0.6 204,246 + -0.6 204,246 + +0.8 204,247 - +1.1 204,251 + +1.0 204,251 + +0.5 204,251 + -0.1 204,251 + +0.5 204,251 + +0.2 204,251 + +0.5 204,307 + +0.8 204,308 - -0.8 204,308 - -0.2 204,321 + -1.3 204,370 + +1.2 204,382 + -0.4 204,382 + +0.9 204,404 + -0.2 204,404 + +0.0 204,404 + +0.4 204,404 + -0.8 204,405 - +0.9 204,428 + +0.0 204,428 + +0.5 204,456 + -0.7 204,556 + EX31_RS22265 0.13 +1.1 204,556 + EX31_RS22265 0.13 -0.6 204,556 + EX31_RS22265 0.13 -0.1 204,618 - EX31_RS22265 0.16 +1.8
Or see this region's nucleotide sequence