Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS22075 and EX31_RS22080 are separated by 256 nucleotides EX31_RS22080 and EX31_RS22085 are separated by 225 nucleotides EX31_RS22085 and EX31_RS22090 are separated by 134 nucleotides
EX31_RS22075: EX31_RS22075 - gamma-glutamyltransferase, at 163,099 to 164,850
_RS22075
EX31_RS22080: EX31_RS22080 - peroxiredoxin C, at 165,107 to 165,709
_RS22080
EX31_RS22085: EX31_RS22085 - DUF479 domain-containing protein, at 165,935 to 166,516
_RS22085
EX31_RS22090: EX31_RS22090 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 166,651 to 167,721
_RS22090
Position (kb) 165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 164.180 kb on + strand, within EX31_RS22075 at 164.180 kb on + strand, within EX31_RS22075 at 164.180 kb on + strand, within EX31_RS22075 at 164.181 kb on - strand, within EX31_RS22075 at 164.181 kb on - strand, within EX31_RS22075 at 164.181 kb on - strand, within EX31_RS22075 at 164.227 kb on + strand, within EX31_RS22075 at 164.228 kb on - strand, within EX31_RS22075 at 164.239 kb on + strand, within EX31_RS22075 at 164.239 kb on + strand, within EX31_RS22075 at 164.240 kb on - strand, within EX31_RS22075 at 164.240 kb on - strand, within EX31_RS22075 at 164.331 kb on + strand, within EX31_RS22075 at 164.340 kb on + strand, within EX31_RS22075 at 164.401 kb on + strand, within EX31_RS22075 at 164.483 kb on + strand, within EX31_RS22075 at 164.484 kb on - strand, within EX31_RS22075 at 164.484 kb on - strand, within EX31_RS22075 at 164.531 kb on + strand, within EX31_RS22075 at 164.531 kb on + strand, within EX31_RS22075 at 164.531 kb on + strand, within EX31_RS22075 at 164.531 kb on + strand, within EX31_RS22075 at 164.531 kb on + strand, within EX31_RS22075 at 164.531 kb on + strand, within EX31_RS22075 at 164.531 kb on + strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.532 kb on - strand, within EX31_RS22075 at 164.535 kb on + strand, within EX31_RS22075 at 164.535 kb on + strand, within EX31_RS22075 at 164.535 kb on + strand, within EX31_RS22075 at 164.535 kb on + strand, within EX31_RS22075 at 164.535 kb on + strand, within EX31_RS22075 at 164.535 kb on + strand, within EX31_RS22075 at 164.536 kb on - strand, within EX31_RS22075 at 164.536 kb on - strand, within EX31_RS22075 at 164.536 kb on - strand, within EX31_RS22075 at 164.536 kb on - strand, within EX31_RS22075 at 164.536 kb on - strand, within EX31_RS22075 at 164.589 kb on + strand, within EX31_RS22075 at 164.798 kb on + strand at 164.798 kb on + strand at 164.799 kb on - strand at 164.799 kb on - strand at 164.850 kb on + strand at 164.850 kb on + strand at 164.851 kb on - strand at 164.864 kb on + strand at 164.865 kb on - strand at 164.961 kb on - strand at 164.995 kb on + strand at 164.995 kb on + strand at 164.995 kb on + strand at 164.996 kb on - strand at 165.135 kb on + strand at 165.136 kb on - strand at 165.136 kb on - strand at 165.140 kb on - strand at 165.369 kb on + strand, within EX31_RS22080 at 165.370 kb on - strand, within EX31_RS22080 at 165.370 kb on - strand, within EX31_RS22080 at 165.412 kb on - strand, within EX31_RS22080 at 165.412 kb on - strand, within EX31_RS22080 at 165.441 kb on - strand, within EX31_RS22080 at 165.452 kb on - strand, within EX31_RS22080 at 165.495 kb on - strand, within EX31_RS22080 at 165.504 kb on - strand, within EX31_RS22080 at 165.504 kb on - strand, within EX31_RS22080 at 165.596 kb on - strand, within EX31_RS22080 at 165.596 kb on - strand, within EX31_RS22080 at 165.596 kb on - strand, within EX31_RS22080 at 165.601 kb on + strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.602 kb on - strand, within EX31_RS22080 at 165.645 kb on - strand, within EX31_RS22080 at 165.645 kb on - strand, within EX31_RS22080 at 165.699 kb on - strand at 165.709 kb on + strand at 165.710 kb on - strand at 165.712 kb on + strand at 165.712 kb on + strand at 165.712 kb on + strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.713 kb on - strand at 165.715 kb on + strand at 165.715 kb on + strand at 165.716 kb on - strand at 165.716 kb on - strand at 165.716 kb on - strand at 165.716 kb on - strand at 165.716 kb on - strand at 165.744 kb on + strand at 165.744 kb on + strand at 165.745 kb on - strand at 165.745 kb on - strand at 165.745 kb on - strand at 165.745 kb on - strand at 165.781 kb on + strand at 165.782 kb on - strand at 165.784 kb on - strand at 165.784 kb on - strand at 165.784 kb on - strand at 165.804 kb on + strand at 165.805 kb on - strand at 165.805 kb on - strand at 165.832 kb on - strand at 165.857 kb on + strand at 165.857 kb on + strand at 165.857 kb on + strand at 165.858 kb on - strand at 165.858 kb on - strand at 165.858 kb on - strand at 165.881 kb on - strand at 165.881 kb on - strand at 165.881 kb on - strand at 165.911 kb on - strand at 165.911 kb on - strand at 165.911 kb on - strand at 165.911 kb on - strand at 165.929 kb on + strand at 165.929 kb on + strand at 165.929 kb on + strand at 165.929 kb on + strand at 165.930 kb on - strand at 165.930 kb on - strand at 165.930 kb on - strand at 166.008 kb on + strand, within EX31_RS22085 at 166.008 kb on + strand, within EX31_RS22085 at 166.008 kb on + strand, within EX31_RS22085 at 166.009 kb on - strand, within EX31_RS22085 at 166.009 kb on - strand, within EX31_RS22085 at 166.021 kb on + strand, within EX31_RS22085 at 166.083 kb on - strand, within EX31_RS22085 at 166.083 kb on - strand, within EX31_RS22085 at 166.083 kb on - strand, within EX31_RS22085 at 166.140 kb on + strand, within EX31_RS22085 at 166.141 kb on - strand, within EX31_RS22085 at 166.141 kb on - strand, within EX31_RS22085 at 166.326 kb on + strand, within EX31_RS22085 at 166.326 kb on + strand, within EX31_RS22085 at 166.326 kb on + strand, within EX31_RS22085 at 166.326 kb on + strand, within EX31_RS22085 at 166.327 kb on - strand, within EX31_RS22085 at 166.327 kb on - strand, within EX31_RS22085 at 166.327 kb on - strand, within EX31_RS22085 at 166.525 kb on + strand at 166.525 kb on + strand at 166.525 kb on + strand at 166.525 kb on + strand at 166.525 kb on + strand at 166.525 kb on + strand at 166.525 kb on + strand at 166.525 kb on + strand at 166.526 kb on - strand at 166.526 kb on - strand at 166.526 kb on - strand at 166.526 kb on - strand at 166.526 kb on - strand at 166.527 kb on + strand at 166.527 kb on + strand at 166.527 kb on + strand at 166.528 kb on - strand at 166.528 kb on - strand at 166.612 kb on + strand at 166.612 kb on + strand at 166.612 kb on + strand at 166.613 kb on - strand at 166.633 kb on + strand at 166.633 kb on + strand at 166.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 164,180 + EX31_RS22075 0.62 -0.3 164,180 + EX31_RS22075 0.62 -0.7 164,180 + EX31_RS22075 0.62 +0.7 164,181 - EX31_RS22075 0.62 +3.6 164,181 - EX31_RS22075 0.62 +0.3 164,181 - EX31_RS22075 0.62 -0.6 164,227 + EX31_RS22075 0.64 -2.5 164,228 - EX31_RS22075 0.64 -0.7 164,239 + EX31_RS22075 0.65 +0.9 164,239 + EX31_RS22075 0.65 +1.0 164,240 - EX31_RS22075 0.65 +0.3 164,240 - EX31_RS22075 0.65 +0.1 164,331 + EX31_RS22075 0.70 +0.1 164,340 + EX31_RS22075 0.71 +0.8 164,401 + EX31_RS22075 0.74 +0.5 164,483 + EX31_RS22075 0.79 -0.0 164,484 - EX31_RS22075 0.79 -0.3 164,484 - EX31_RS22075 0.79 -1.1 164,531 + EX31_RS22075 0.82 +0.8 164,531 + EX31_RS22075 0.82 -0.8 164,531 + EX31_RS22075 0.82 +0.4 164,531 + EX31_RS22075 0.82 +1.6 164,531 + EX31_RS22075 0.82 +0.5 164,531 + EX31_RS22075 0.82 -1.1 164,531 + EX31_RS22075 0.82 -0.5 164,532 - EX31_RS22075 0.82 +1.1 164,532 - EX31_RS22075 0.82 +0.0 164,532 - EX31_RS22075 0.82 -0.3 164,532 - EX31_RS22075 0.82 -0.3 164,532 - EX31_RS22075 0.82 +0.7 164,532 - EX31_RS22075 0.82 +0.5 164,532 - EX31_RS22075 0.82 -0.1 164,532 - EX31_RS22075 0.82 +0.2 164,532 - EX31_RS22075 0.82 -0.8 164,532 - EX31_RS22075 0.82 +0.5 164,535 + EX31_RS22075 0.82 -0.8 164,535 + EX31_RS22075 0.82 -1.0 164,535 + EX31_RS22075 0.82 +0.1 164,535 + EX31_RS22075 0.82 -0.2 164,535 + EX31_RS22075 0.82 -0.7 164,535 + EX31_RS22075 0.82 -0.2 164,536 - EX31_RS22075 0.82 -0.1 164,536 - EX31_RS22075 0.82 +0.7 164,536 - EX31_RS22075 0.82 -0.1 164,536 - EX31_RS22075 0.82 +1.2 164,536 - EX31_RS22075 0.82 -0.7 164,589 + EX31_RS22075 0.85 +0.4 164,798 + +2.1 164,798 + -1.7 164,799 - +0.2 164,799 - +0.4 164,850 + +0.8 164,850 + +0.8 164,851 - +0.2 164,864 + +0.8 164,865 - +0.0 164,961 - +0.8 164,995 + +0.2 164,995 + +0.4 164,995 + +0.1 164,996 - -0.4 165,135 + -1.6 165,136 - -0.6 165,136 - -0.3 165,140 - -1.8 165,369 + EX31_RS22080 0.43 -1.5 165,370 - EX31_RS22080 0.44 +0.2 165,370 - EX31_RS22080 0.44 -0.8 165,412 - EX31_RS22080 0.51 -0.4 165,412 - EX31_RS22080 0.51 -1.0 165,441 - EX31_RS22080 0.55 -0.6 165,452 - EX31_RS22080 0.57 -1.2 165,495 - EX31_RS22080 0.64 -0.6 165,504 - EX31_RS22080 0.66 -0.5 165,504 - EX31_RS22080 0.66 -0.2 165,596 - EX31_RS22080 0.81 -1.1 165,596 - EX31_RS22080 0.81 -0.6 165,596 - EX31_RS22080 0.81 -0.8 165,601 + EX31_RS22080 0.82 -1.8 165,602 - EX31_RS22080 0.82 -0.0 165,602 - EX31_RS22080 0.82 -1.2 165,602 - EX31_RS22080 0.82 -1.2 165,602 - EX31_RS22080 0.82 -1.1 165,602 - EX31_RS22080 0.82 -0.8 165,602 - EX31_RS22080 0.82 -1.3 165,602 - EX31_RS22080 0.82 -0.6 165,602 - EX31_RS22080 0.82 -1.2 165,645 - EX31_RS22080 0.89 -1.4 165,645 - EX31_RS22080 0.89 -0.7 165,699 - -1.0 165,709 + -0.9 165,710 - -0.9 165,712 + -0.6 165,712 + +0.9 165,712 + +0.0 165,713 - -2.6 165,713 - -0.7 165,713 - -1.3 165,713 - -1.7 165,713 - -0.3 165,713 - -0.9 165,713 - -1.1 165,713 - -1.5 165,713 - -1.4 165,713 - -1.3 165,713 - -0.9 165,713 - +0.1 165,715 + -2.1 165,715 + -0.7 165,716 - -0.3 165,716 - -0.9 165,716 - -1.6 165,716 - -0.9 165,716 - -1.5 165,744 + -0.7 165,744 + -1.4 165,745 - -1.0 165,745 - -0.3 165,745 - -0.9 165,745 - +0.2 165,781 + -0.3 165,782 - -0.2 165,784 - -0.3 165,784 - -1.8 165,784 - -2.9 165,804 + -2.2 165,805 - +1.3 165,805 - -2.0 165,832 - -0.3 165,857 + +0.6 165,857 + +0.4 165,857 + +0.3 165,858 - -0.4 165,858 - +0.4 165,858 - +0.5 165,881 - -1.0 165,881 - +0.3 165,881 - -0.1 165,911 - +0.4 165,911 - +0.6 165,911 - -0.7 165,911 - -0.6 165,929 + +0.2 165,929 + +0.9 165,929 + -0.8 165,929 + +0.1 165,930 - -0.0 165,930 - +0.8 165,930 - -0.1 166,008 + EX31_RS22085 0.13 +1.2 166,008 + EX31_RS22085 0.13 +0.9 166,008 + EX31_RS22085 0.13 -0.3 166,009 - EX31_RS22085 0.13 +0.5 166,009 - EX31_RS22085 0.13 -0.3 166,021 + EX31_RS22085 0.15 +0.2 166,083 - EX31_RS22085 0.25 -0.4 166,083 - EX31_RS22085 0.25 -1.5 166,083 - EX31_RS22085 0.25 -0.2 166,140 + EX31_RS22085 0.35 +0.6 166,141 - EX31_RS22085 0.35 +0.0 166,141 - EX31_RS22085 0.35 -0.8 166,326 + EX31_RS22085 0.67 +0.9 166,326 + EX31_RS22085 0.67 +1.3 166,326 + EX31_RS22085 0.67 +0.4 166,326 + EX31_RS22085 0.67 +0.2 166,327 - EX31_RS22085 0.67 -0.9 166,327 - EX31_RS22085 0.67 -0.1 166,327 - EX31_RS22085 0.67 +0.7 166,525 + +0.6 166,525 + +1.2 166,525 + -0.3 166,525 + +0.1 166,525 + -0.5 166,525 + -0.5 166,525 + +0.2 166,525 + +0.5 166,526 - -0.5 166,526 - +0.5 166,526 - +0.5 166,526 - +1.6 166,526 - -0.3 166,527 + +0.2 166,527 + +0.1 166,527 + -0.1 166,528 - -0.9 166,528 - +0.2 166,612 + +0.1 166,612 + -0.5 166,612 + +0.4 166,613 - +0.2 166,633 + +0.0 166,633 + +0.1 166,633 + -0.3
Or see this region's nucleotide sequence