Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21010 and EX31_RS21015 overlap by 30 nucleotides EX31_RS21015 and EX31_RS21020 are separated by 26 nucleotides EX31_RS21020 and EX31_RS21025 are separated by 269 nucleotides
EX31_RS21010: EX31_RS21010 - murein L,D-transpeptidase, at 846,042 to 846,767
_RS21010
EX31_RS21015: EX31_RS21015 - class II glutamine amidotransferase, at 846,738 to 847,505
_RS21015
EX31_RS21020: EX31_RS21020 - D-sedoheptulose 7-phosphate isomerase, at 847,532 to 848,113
_RS21020
EX31_RS21025: EX31_RS21025 - acyl-CoA dehydrogenase, at 848,383 to 850,851
_RS21025
Position (kb) 847
848
849 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 846.551 kb on + strand, within EX31_RS21010 at 846.551 kb on + strand, within EX31_RS21010 at 846.551 kb on + strand, within EX31_RS21010 at 846.551 kb on + strand, within EX31_RS21010 at 846.597 kb on - strand, within EX31_RS21010 at 846.609 kb on + strand, within EX31_RS21010 at 846.609 kb on + strand, within EX31_RS21010 at 846.609 kb on + strand, within EX31_RS21010 at 846.609 kb on + strand, within EX31_RS21010 at 846.609 kb on + strand, within EX31_RS21010 at 846.609 kb on + strand, within EX31_RS21010 at 846.610 kb on - strand, within EX31_RS21010 at 846.610 kb on - strand, within EX31_RS21010 at 846.610 kb on - strand, within EX31_RS21010 at 846.610 kb on - strand, within EX31_RS21010 at 846.610 kb on - strand, within EX31_RS21010 at 846.612 kb on + strand, within EX31_RS21010 at 846.613 kb on - strand, within EX31_RS21010 at 846.631 kb on + strand, within EX31_RS21010 at 846.632 kb on - strand, within EX31_RS21010 at 846.648 kb on + strand, within EX31_RS21010 at 846.648 kb on + strand, within EX31_RS21010 at 846.648 kb on + strand, within EX31_RS21010 at 846.648 kb on + strand, within EX31_RS21010 at 846.648 kb on + strand, within EX31_RS21010 at 846.649 kb on - strand, within EX31_RS21010 at 846.695 kb on + strand at 846.696 kb on - strand at 846.696 kb on - strand at 846.696 kb on - strand at 846.699 kb on + strand at 846.699 kb on + strand at 846.699 kb on + strand at 846.699 kb on + strand at 846.699 kb on + strand at 846.700 kb on - strand at 846.700 kb on - strand at 846.700 kb on - strand at 846.700 kb on - strand at 846.700 kb on - strand at 846.709 kb on + strand at 846.709 kb on + strand at 846.709 kb on + strand at 846.709 kb on + strand at 846.709 kb on + strand at 846.710 kb on - strand at 846.710 kb on - strand at 846.710 kb on - strand at 846.766 kb on - strand at 846.766 kb on - strand at 846.766 kb on - strand at 846.953 kb on - strand, within EX31_RS21015 at 846.990 kb on - strand, within EX31_RS21015 at 846.990 kb on - strand, within EX31_RS21015 at 846.990 kb on - strand, within EX31_RS21015 at 846.990 kb on - strand, within EX31_RS21015 at 846.990 kb on - strand, within EX31_RS21015 at 847.008 kb on + strand, within EX31_RS21015 at 847.008 kb on + strand, within EX31_RS21015 at 847.031 kb on + strand, within EX31_RS21015 at 847.031 kb on + strand, within EX31_RS21015 at 847.032 kb on - strand, within EX31_RS21015 at 847.032 kb on - strand, within EX31_RS21015 at 847.032 kb on - strand, within EX31_RS21015 at 847.032 kb on - strand, within EX31_RS21015 at 847.032 kb on - strand, within EX31_RS21015 at 847.032 kb on - strand, within EX31_RS21015 at 847.032 kb on - strand, within EX31_RS21015 at 847.033 kb on + strand, within EX31_RS21015 at 847.034 kb on - strand, within EX31_RS21015 at 847.034 kb on - strand, within EX31_RS21015 at 847.034 kb on - strand, within EX31_RS21015 at 847.034 kb on - strand, within EX31_RS21015 at 847.112 kb on - strand, within EX31_RS21015 at 847.192 kb on + strand, within EX31_RS21015 at 847.192 kb on + strand, within EX31_RS21015 at 847.192 kb on + strand, within EX31_RS21015 at 847.192 kb on + strand, within EX31_RS21015 at 847.192 kb on + strand, within EX31_RS21015 at 847.192 kb on + strand, within EX31_RS21015 at 847.193 kb on - strand, within EX31_RS21015 at 847.193 kb on - strand, within EX31_RS21015 at 847.193 kb on - strand, within EX31_RS21015 at 847.235 kb on + strand, within EX31_RS21015 at 847.274 kb on + strand, within EX31_RS21015 at 847.275 kb on - strand, within EX31_RS21015 at 847.275 kb on - strand, within EX31_RS21015 at 847.306 kb on + strand, within EX31_RS21015 at 847.337 kb on + strand, within EX31_RS21015 at 847.337 kb on + strand, within EX31_RS21015 at 847.338 kb on - strand, within EX31_RS21015 at 847.364 kb on + strand, within EX31_RS21015 at 847.384 kb on + strand, within EX31_RS21015 at 847.409 kb on + strand, within EX31_RS21015 at 847.440 kb on + strand at 847.533 kb on + strand at 847.533 kb on + strand at 847.534 kb on - strand at 847.534 kb on - strand at 847.706 kb on - strand, within EX31_RS21020 at 847.819 kb on - strand, within EX31_RS21020 at 847.819 kb on - strand, within EX31_RS21020 at 847.819 kb on - strand, within EX31_RS21020 at 847.819 kb on - strand, within EX31_RS21020 at 848.036 kb on - strand, within EX31_RS21020 at 848.113 kb on + strand at 848.114 kb on - strand at 848.114 kb on - strand at 848.166 kb on + strand at 848.167 kb on - strand at 848.167 kb on - strand at 848.238 kb on - strand at 848.289 kb on + strand at 848.289 kb on + strand at 848.290 kb on - strand at 848.292 kb on + strand at 848.292 kb on + strand at 848.293 kb on - strand at 848.296 kb on + strand at 848.297 kb on - strand at 848.297 kb on - strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.336 kb on + strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.337 kb on - strand at 848.338 kb on + strand at 848.338 kb on + strand at 848.338 kb on + strand at 848.344 kb on + strand at 848.366 kb on + strand at 848.367 kb on - strand at 848.379 kb on + strand at 848.379 kb on + strand at 848.379 kb on + strand at 848.379 kb on + strand at 848.379 kb on + strand at 848.380 kb on - strand at 848.380 kb on - strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.382 kb on + strand at 848.383 kb on - strand at 848.383 kb on - strand at 848.383 kb on - strand at 848.394 kb on + strand at 848.394 kb on + strand at 848.395 kb on - strand at 848.395 kb on - strand at 848.395 kb on - strand at 848.434 kb on + strand at 848.434 kb on + strand at 848.435 kb on - strand at 848.435 kb on - strand at 848.435 kb on - strand at 848.435 kb on - strand at 848.502 kb on + strand at 848.525 kb on + strand at 848.525 kb on + strand at 848.525 kb on + strand at 848.526 kb on - strand at 848.526 kb on - strand at 848.764 kb on - strand, within EX31_RS21025 at 848.793 kb on + strand, within EX31_RS21025 at 848.854 kb on + strand, within EX31_RS21025 at 848.855 kb on - strand, within EX31_RS21025 at 848.889 kb on + strand, within EX31_RS21025 at 848.890 kb on - strand, within EX31_RS21025 at 848.923 kb on + strand, within EX31_RS21025 at 848.924 kb on - strand, within EX31_RS21025 at 849.017 kb on + strand, within EX31_RS21025 at 849.018 kb on - strand, within EX31_RS21025 at 849.028 kb on + strand, within EX31_RS21025 at 849.055 kb on + strand, within EX31_RS21025 at 849.055 kb on + strand, within EX31_RS21025 at 849.056 kb on - strand, within EX31_RS21025
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 846,551 + EX31_RS21010 0.70 -0.4 846,551 + EX31_RS21010 0.70 -0.4 846,551 + EX31_RS21010 0.70 -0.3 846,551 + EX31_RS21010 0.70 +0.4 846,597 - EX31_RS21010 0.76 +0.7 846,609 + EX31_RS21010 0.78 -1.8 846,609 + EX31_RS21010 0.78 -1.8 846,609 + EX31_RS21010 0.78 +0.6 846,609 + EX31_RS21010 0.78 +0.1 846,609 + EX31_RS21010 0.78 -0.3 846,609 + EX31_RS21010 0.78 +0.6 846,610 - EX31_RS21010 0.78 -0.1 846,610 - EX31_RS21010 0.78 +0.2 846,610 - EX31_RS21010 0.78 -0.0 846,610 - EX31_RS21010 0.78 +0.2 846,610 - EX31_RS21010 0.78 -0.8 846,612 + EX31_RS21010 0.79 +0.6 846,613 - EX31_RS21010 0.79 +0.6 846,631 + EX31_RS21010 0.81 +0.4 846,632 - EX31_RS21010 0.81 -0.1 846,648 + EX31_RS21010 0.83 -0.0 846,648 + EX31_RS21010 0.83 +0.5 846,648 + EX31_RS21010 0.83 +0.3 846,648 + EX31_RS21010 0.83 +0.9 846,648 + EX31_RS21010 0.83 -0.1 846,649 - EX31_RS21010 0.84 -0.2 846,695 + -0.3 846,696 - -0.3 846,696 - +0.2 846,696 - -0.1 846,699 + -0.1 846,699 + +0.0 846,699 + +0.3 846,699 + -0.3 846,699 + +0.2 846,700 - -0.4 846,700 - -0.0 846,700 - +0.5 846,700 - +0.3 846,700 - +0.0 846,709 + +1.1 846,709 + +0.4 846,709 + -0.2 846,709 + +0.3 846,709 + -0.7 846,710 - +0.2 846,710 - -0.1 846,710 - +0.5 846,766 - +0.4 846,766 - -0.2 846,766 - -0.6 846,953 - EX31_RS21015 0.28 +0.2 846,990 - EX31_RS21015 0.33 +0.4 846,990 - EX31_RS21015 0.33 -0.1 846,990 - EX31_RS21015 0.33 +0.1 846,990 - EX31_RS21015 0.33 -1.2 846,990 - EX31_RS21015 0.33 +0.3 847,008 + EX31_RS21015 0.35 +0.4 847,008 + EX31_RS21015 0.35 +0.7 847,031 + EX31_RS21015 0.38 +0.7 847,031 + EX31_RS21015 0.38 -0.2 847,032 - EX31_RS21015 0.38 +0.2 847,032 - EX31_RS21015 0.38 +0.3 847,032 - EX31_RS21015 0.38 -0.2 847,032 - EX31_RS21015 0.38 +1.5 847,032 - EX31_RS21015 0.38 -0.4 847,032 - EX31_RS21015 0.38 -1.0 847,032 - EX31_RS21015 0.38 -0.4 847,033 + EX31_RS21015 0.38 +0.7 847,034 - EX31_RS21015 0.39 -0.0 847,034 - EX31_RS21015 0.39 +0.7 847,034 - EX31_RS21015 0.39 -0.6 847,034 - EX31_RS21015 0.39 +0.4 847,112 - EX31_RS21015 0.49 +0.5 847,192 + EX31_RS21015 0.59 -0.2 847,192 + EX31_RS21015 0.59 +0.8 847,192 + EX31_RS21015 0.59 +0.5 847,192 + EX31_RS21015 0.59 -1.1 847,192 + EX31_RS21015 0.59 -0.7 847,192 + EX31_RS21015 0.59 -3.0 847,193 - EX31_RS21015 0.59 +0.9 847,193 - EX31_RS21015 0.59 +1.1 847,193 - EX31_RS21015 0.59 -1.1 847,235 + EX31_RS21015 0.65 +1.1 847,274 + EX31_RS21015 0.70 -0.1 847,275 - EX31_RS21015 0.70 +0.0 847,275 - EX31_RS21015 0.70 -1.0 847,306 + EX31_RS21015 0.74 +0.9 847,337 + EX31_RS21015 0.78 -0.3 847,337 + EX31_RS21015 0.78 +1.2 847,338 - EX31_RS21015 0.78 -0.2 847,364 + EX31_RS21015 0.82 -2.3 847,384 + EX31_RS21015 0.84 -0.6 847,409 + EX31_RS21015 0.87 +2.7 847,440 + +1.5 847,533 + +1.3 847,533 + +0.1 847,534 - -0.1 847,534 - +0.3 847,706 - EX31_RS21020 0.30 -1.0 847,819 - EX31_RS21020 0.49 -2.3 847,819 - EX31_RS21020 0.49 -0.6 847,819 - EX31_RS21020 0.49 -0.1 847,819 - EX31_RS21020 0.49 -0.1 848,036 - EX31_RS21020 0.87 +0.2 848,113 + -0.9 848,114 - +1.7 848,114 - +0.9 848,166 + +0.0 848,167 - -0.4 848,167 - +0.3 848,238 - -1.3 848,289 + -0.2 848,289 + -0.6 848,290 - -0.2 848,292 + +1.4 848,292 + +0.4 848,293 - -0.1 848,296 + -0.0 848,297 - +0.4 848,297 - +0.0 848,336 + +0.6 848,336 + -0.9 848,336 + +0.4 848,336 + -0.4 848,336 + -0.7 848,336 + -2.4 848,336 + +1.2 848,336 + -0.1 848,336 + +0.9 848,337 - -0.1 848,337 - +1.4 848,337 - -0.4 848,337 - +1.9 848,337 - -0.4 848,337 - -0.2 848,337 - +0.6 848,337 - -1.1 848,337 - -0.8 848,338 + -0.8 848,338 + +0.1 848,338 + +0.5 848,344 + +0.4 848,366 + -1.1 848,367 - -1.4 848,379 + +0.2 848,379 + -0.6 848,379 + -0.1 848,379 + -0.5 848,379 + +0.6 848,380 - +0.1 848,380 - -0.5 848,382 + +0.0 848,382 + -0.7 848,382 + -0.0 848,382 + +1.0 848,382 + +0.3 848,382 + +0.8 848,382 + -0.3 848,382 + +1.3 848,382 + -2.5 848,383 - +0.6 848,383 - +0.7 848,383 - +0.1 848,394 + +0.9 848,394 + -0.6 848,395 - +0.6 848,395 - +0.4 848,395 - +0.2 848,434 + -0.5 848,434 + -0.3 848,435 - +0.4 848,435 - +0.1 848,435 - -0.3 848,435 - -0.1 848,502 + +0.4 848,525 + -1.6 848,525 + +0.4 848,525 + +0.3 848,526 - +0.1 848,526 - -0.5 848,764 - EX31_RS21025 0.15 +0.3 848,793 + EX31_RS21025 0.17 +0.5 848,854 + EX31_RS21025 0.19 -0.3 848,855 - EX31_RS21025 0.19 +0.2 848,889 + EX31_RS21025 0.20 -0.2 848,890 - EX31_RS21025 0.21 +0.4 848,923 + EX31_RS21025 0.22 +1.0 848,924 - EX31_RS21025 0.22 -0.2 849,017 + EX31_RS21025 0.26 -0.4 849,018 - EX31_RS21025 0.26 +0.3 849,028 + EX31_RS21025 0.26 -0.9 849,055 + EX31_RS21025 0.27 +0.0 849,055 + EX31_RS21025 0.27 -0.9 849,056 - EX31_RS21025 0.27 +0.8
Or see this region's nucleotide sequence