Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS20715 and EX31_RS20720 are separated by 87 nucleotides EX31_RS20720 and EX31_RS26095 overlap by 7 nucleotides EX31_RS26095 and EX31_RS20725 are separated by 174 nucleotides EX31_RS20725 and EX31_RS20730 are separated by 20 nucleotides EX31_RS20730 and EX31_RS20735 overlap by 4 nucleotides
EX31_RS20715: EX31_RS20715 - MFS transporter, at 785,367 to 786,611
_RS20715
EX31_RS20720: EX31_RS20720 - hypothetical protein, at 786,699 to 786,887
_RS20720
EX31_RS26095: EX31_RS26095 - hypothetical protein, at 786,881 to 786,988
_RS26095
EX31_RS20725: EX31_RS20725 - hypothetical protein, at 787,163 to 787,354
_RS20725
EX31_RS20730: EX31_RS20730 - exodeoxyribonuclease V subunit alpha, at 787,375 to 789,429
_RS20730
EX31_RS20735: EX31_RS20735 - exodeoxyribonuclease V subunit beta, at 789,426 to 793,109
_RS20735
Position (kb) 787
788
789
790 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 786.495 kb on - strand at 786.550 kb on + strand at 786.550 kb on + strand at 786.550 kb on + strand at 786.551 kb on - strand at 786.556 kb on + strand at 786.556 kb on + strand at 786.556 kb on + strand at 786.607 kb on + strand at 786.607 kb on + strand at 786.607 kb on + strand at 786.607 kb on + strand at 786.608 kb on - strand at 786.608 kb on - strand at 786.608 kb on - strand at 786.608 kb on - strand at 786.609 kb on + strand at 786.609 kb on + strand at 786.609 kb on + strand at 786.609 kb on + strand at 786.609 kb on + strand at 786.610 kb on - strand at 786.616 kb on + strand at 786.617 kb on - strand at 786.675 kb on + strand at 786.715 kb on + strand at 786.715 kb on + strand at 786.715 kb on + strand at 786.716 kb on - strand at 786.716 kb on - strand at 786.733 kb on + strand, within EX31_RS20720 at 786.733 kb on + strand, within EX31_RS20720 at 786.734 kb on - strand, within EX31_RS20720 at 786.746 kb on + strand, within EX31_RS20720 at 786.746 kb on + strand, within EX31_RS20720 at 786.746 kb on + strand, within EX31_RS20720 at 786.747 kb on - strand, within EX31_RS20720 at 786.747 kb on - strand, within EX31_RS20720 at 786.747 kb on - strand, within EX31_RS20720 at 786.831 kb on + strand, within EX31_RS20720 at 786.831 kb on + strand, within EX31_RS20720 at 786.831 kb on + strand, within EX31_RS20720 at 786.831 kb on + strand, within EX31_RS20720 at 786.832 kb on - strand, within EX31_RS20720 at 786.924 kb on + strand, within EX31_RS26095 at 786.924 kb on + strand, within EX31_RS26095 at 786.924 kb on + strand, within EX31_RS26095 at 786.924 kb on + strand, within EX31_RS26095 at 786.924 kb on + strand, within EX31_RS26095 at 786.924 kb on + strand, within EX31_RS26095 at 786.924 kb on + strand, within EX31_RS26095 at 786.925 kb on - strand, within EX31_RS26095 at 786.925 kb on - strand, within EX31_RS26095 at 786.925 kb on - strand, within EX31_RS26095 at 786.925 kb on - strand, within EX31_RS26095 at 786.925 kb on - strand, within EX31_RS26095 at 786.927 kb on + strand, within EX31_RS26095 at 786.927 kb on + strand, within EX31_RS26095 at 786.927 kb on + strand, within EX31_RS26095 at 786.927 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.937 kb on + strand, within EX31_RS26095 at 786.938 kb on - strand, within EX31_RS26095 at 786.938 kb on - strand, within EX31_RS26095 at 786.938 kb on - strand, within EX31_RS26095 at 786.938 kb on - strand, within EX31_RS26095 at 786.938 kb on - strand, within EX31_RS26095 at 786.938 kb on - strand, within EX31_RS26095 at 786.960 kb on + strand, within EX31_RS26095 at 786.961 kb on - strand, within EX31_RS26095 at 786.991 kb on + strand at 786.991 kb on + strand at 786.991 kb on + strand at 786.991 kb on + strand at 786.992 kb on - strand at 786.992 kb on - strand at 786.992 kb on - strand at 787.001 kb on + strand at 787.001 kb on + strand at 787.002 kb on - strand at 787.010 kb on + strand at 787.011 kb on - strand at 787.011 kb on - strand at 787.020 kb on + strand at 787.020 kb on + strand at 787.024 kb on + strand at 787.024 kb on + strand at 787.076 kb on - strand at 787.092 kb on - strand at 787.119 kb on + strand at 787.119 kb on + strand at 787.122 kb on + strand at 787.122 kb on + strand at 787.122 kb on + strand at 787.122 kb on + strand at 787.122 kb on + strand at 787.154 kb on + strand at 787.154 kb on + strand at 787.154 kb on + strand at 787.154 kb on + strand at 787.154 kb on + strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.155 kb on - strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.157 kb on + strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.158 kb on - strand at 787.217 kb on + strand, within EX31_RS20725 at 787.238 kb on + strand, within EX31_RS20725 at 787.238 kb on + strand, within EX31_RS20725 at 787.238 kb on + strand, within EX31_RS20725 at 787.317 kb on + strand, within EX31_RS20725 at 787.317 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.321 kb on + strand, within EX31_RS20725 at 787.322 kb on - strand, within EX31_RS20725 at 787.322 kb on - strand, within EX31_RS20725 at 787.322 kb on - strand, within EX31_RS20725 at 787.369 kb on + strand at 787.406 kb on - strand at 787.432 kb on + strand at 787.499 kb on + strand at 787.500 kb on - strand at 787.555 kb on - strand at 787.560 kb on + strand at 787.600 kb on + strand, within EX31_RS20730 at 787.600 kb on + strand, within EX31_RS20730 at 787.600 kb on + strand, within EX31_RS20730 at 787.600 kb on + strand, within EX31_RS20730 at 787.600 kb on + strand, within EX31_RS20730 at 787.699 kb on - strand, within EX31_RS20730 at 787.766 kb on + strand, within EX31_RS20730 at 787.767 kb on - strand, within EX31_RS20730 at 787.822 kb on - strand, within EX31_RS20730 at 787.894 kb on + strand, within EX31_RS20730 at 787.895 kb on - strand, within EX31_RS20730 at 788.009 kb on + strand, within EX31_RS20730 at 788.009 kb on + strand, within EX31_RS20730 at 788.009 kb on + strand, within EX31_RS20730 at 788.009 kb on + strand, within EX31_RS20730 at 788.010 kb on - strand, within EX31_RS20730 at 788.010 kb on - strand, within EX31_RS20730 at 788.010 kb on - strand, within EX31_RS20730 at 788.010 kb on - strand, within EX31_RS20730 at 788.010 kb on - strand, within EX31_RS20730 at 788.035 kb on + strand, within EX31_RS20730 at 788.036 kb on - strand, within EX31_RS20730 at 788.036 kb on - strand, within EX31_RS20730 at 788.036 kb on - strand, within EX31_RS20730 at 788.147 kb on + strand, within EX31_RS20730 at 788.148 kb on - strand, within EX31_RS20730 at 788.148 kb on - strand, within EX31_RS20730 at 788.148 kb on - strand, within EX31_RS20730 at 788.195 kb on - strand, within EX31_RS20730 at 788.260 kb on + strand, within EX31_RS20730 at 788.261 kb on - strand, within EX31_RS20730 at 788.261 kb on - strand, within EX31_RS20730 at 788.261 kb on - strand, within EX31_RS20730 at 788.358 kb on - strand, within EX31_RS20730 at 788.358 kb on - strand, within EX31_RS20730 at 788.384 kb on - strand, within EX31_RS20730 at 788.384 kb on - strand, within EX31_RS20730 at 788.626 kb on - strand, within EX31_RS20730 at 788.783 kb on - strand, within EX31_RS20730 at 788.783 kb on - strand, within EX31_RS20730 at 788.842 kb on - strand, within EX31_RS20730 at 789.042 kb on - strand, within EX31_RS20730 at 789.538 kb on - strand at 789.542 kb on - strand at 789.569 kb on - strand at 790.231 kb on - strand, within EX31_RS20735 at 790.235 kb on - strand, within EX31_RS20735 at 790.235 kb on - strand, within EX31_RS20735 at 790.235 kb on - strand, within EX31_RS20735 at 790.235 kb on - strand, within EX31_RS20735 at 790.235 kb on - strand, within EX31_RS20735 at 790.300 kb on + strand, within EX31_RS20735 at 790.301 kb on - strand, within EX31_RS20735 at 790.301 kb on - strand, within EX31_RS20735 at 790.301 kb on - strand, within EX31_RS20735 at 790.301 kb on - strand, within EX31_RS20735 at 790.301 kb on - strand, within EX31_RS20735 at 790.301 kb on - strand, within EX31_RS20735 at 790.301 kb on - strand, within EX31_RS20735 at 790.418 kb on - strand, within EX31_RS20735
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 786,495 - +0.4 786,550 + +0.5 786,550 + +0.2 786,550 + -0.0 786,551 - +1.2 786,556 + +0.4 786,556 + -0.2 786,556 + +0.4 786,607 + -0.1 786,607 + -0.4 786,607 + -0.4 786,607 + +1.0 786,608 - +0.9 786,608 - +0.4 786,608 - +1.6 786,608 - +0.6 786,609 + +0.3 786,609 + -0.8 786,609 + +0.5 786,609 + +0.5 786,609 + -0.1 786,610 - -0.7 786,616 + +0.3 786,617 - +0.2 786,675 + -0.9 786,715 + -1.3 786,715 + +0.0 786,715 + -0.5 786,716 - -1.4 786,716 - -1.1 786,733 + EX31_RS20720 0.18 -0.6 786,733 + EX31_RS20720 0.18 -0.5 786,734 - EX31_RS20720 0.19 +0.4 786,746 + EX31_RS20720 0.25 -0.8 786,746 + EX31_RS20720 0.25 +0.3 786,746 + EX31_RS20720 0.25 +0.5 786,747 - EX31_RS20720 0.25 -0.8 786,747 - EX31_RS20720 0.25 -0.1 786,747 - EX31_RS20720 0.25 +0.3 786,831 + EX31_RS20720 0.70 -0.0 786,831 + EX31_RS20720 0.70 -1.0 786,831 + EX31_RS20720 0.70 -0.9 786,831 + EX31_RS20720 0.70 -0.2 786,832 - EX31_RS20720 0.70 -0.2 786,924 + EX31_RS26095 0.40 +0.9 786,924 + EX31_RS26095 0.40 +0.7 786,924 + EX31_RS26095 0.40 +0.9 786,924 + EX31_RS26095 0.40 +0.0 786,924 + EX31_RS26095 0.40 -0.1 786,924 + EX31_RS26095 0.40 -0.5 786,924 + EX31_RS26095 0.40 -0.0 786,925 - EX31_RS26095 0.41 +0.4 786,925 - EX31_RS26095 0.41 -0.7 786,925 - EX31_RS26095 0.41 -0.2 786,925 - EX31_RS26095 0.41 +0.9 786,925 - EX31_RS26095 0.41 -0.3 786,927 + EX31_RS26095 0.43 +0.9 786,927 + EX31_RS26095 0.43 -0.0 786,927 + EX31_RS26095 0.43 -0.1 786,927 + EX31_RS26095 0.43 -0.4 786,937 + EX31_RS26095 0.52 -1.8 786,937 + EX31_RS26095 0.52 +0.1 786,937 + EX31_RS26095 0.52 +1.0 786,937 + EX31_RS26095 0.52 +0.4 786,937 + EX31_RS26095 0.52 +0.8 786,937 + EX31_RS26095 0.52 +0.9 786,937 + EX31_RS26095 0.52 -0.5 786,937 + EX31_RS26095 0.52 +0.3 786,937 + EX31_RS26095 0.52 +1.2 786,937 + EX31_RS26095 0.52 +0.2 786,938 - EX31_RS26095 0.53 -0.7 786,938 - EX31_RS26095 0.53 -1.2 786,938 - EX31_RS26095 0.53 -0.1 786,938 - EX31_RS26095 0.53 +1.2 786,938 - EX31_RS26095 0.53 +1.2 786,938 - EX31_RS26095 0.53 -2.7 786,960 + EX31_RS26095 0.73 +0.5 786,961 - EX31_RS26095 0.74 +2.7 786,991 + -0.5 786,991 + +0.2 786,991 + -1.3 786,991 + +0.1 786,992 - +0.8 786,992 - -0.4 786,992 - -1.5 787,001 + +0.2 787,001 + +0.1 787,002 - -0.0 787,010 + +0.6 787,011 - -2.1 787,011 - -0.4 787,020 + -0.5 787,020 + +0.6 787,024 + +1.6 787,024 + +1.0 787,076 - -1.8 787,092 - -0.9 787,119 + -0.5 787,119 + +0.1 787,122 + -0.3 787,122 + +0.8 787,122 + +0.5 787,122 + +0.2 787,122 + -0.0 787,154 + -0.4 787,154 + +1.0 787,154 + -0.2 787,154 + +1.0 787,154 + +0.7 787,155 - -0.5 787,155 - -2.9 787,155 - +0.6 787,155 - -0.4 787,155 - +0.0 787,155 - +0.4 787,155 - +0.2 787,155 - -0.3 787,155 - -0.5 787,155 - -0.3 787,155 - -0.2 787,155 - +1.1 787,155 - -0.1 787,157 + +0.4 787,157 + -0.0 787,157 + -0.1 787,157 + -0.3 787,157 + +0.1 787,157 + -0.2 787,157 + -0.2 787,157 + +1.3 787,157 + +0.2 787,157 + +0.1 787,157 + -1.1 787,157 + +0.2 787,157 + +0.9 787,157 + +0.5 787,157 + +0.1 787,157 + -0.9 787,157 + -1.3 787,157 + -0.7 787,157 + +0.5 787,157 + -0.3 787,157 + -0.3 787,157 + -0.7 787,158 - +0.5 787,158 - -0.1 787,158 - -0.6 787,158 - +0.2 787,158 - +0.9 787,158 - +0.9 787,158 - -0.5 787,158 - -0.8 787,158 - -0.3 787,158 - +0.9 787,158 - +0.1 787,158 - +1.3 787,158 - +0.9 787,158 - +0.2 787,158 - -0.1 787,158 - -0.8 787,217 + EX31_RS20725 0.28 -0.3 787,238 + EX31_RS20725 0.39 +0.6 787,238 + EX31_RS20725 0.39 +0.5 787,238 + EX31_RS20725 0.39 -0.5 787,317 + EX31_RS20725 0.80 -0.2 787,317 + EX31_RS20725 0.80 +0.2 787,321 + EX31_RS20725 0.82 -0.1 787,321 + EX31_RS20725 0.82 +0.5 787,321 + EX31_RS20725 0.82 -0.3 787,321 + EX31_RS20725 0.82 +0.9 787,321 + EX31_RS20725 0.82 +0.2 787,321 + EX31_RS20725 0.82 -0.5 787,321 + EX31_RS20725 0.82 -1.1 787,321 + EX31_RS20725 0.82 +0.5 787,321 + EX31_RS20725 0.82 +0.2 787,322 - EX31_RS20725 0.83 +0.2 787,322 - EX31_RS20725 0.83 +0.2 787,322 - EX31_RS20725 0.83 +0.1 787,369 + -0.8 787,406 - +0.4 787,432 + -1.0 787,499 + -1.9 787,500 - -0.9 787,555 - +1.4 787,560 + -0.1 787,600 + EX31_RS20730 0.11 +0.5 787,600 + EX31_RS20730 0.11 -1.3 787,600 + EX31_RS20730 0.11 -1.0 787,600 + EX31_RS20730 0.11 -0.5 787,600 + EX31_RS20730 0.11 -0.5 787,699 - EX31_RS20730 0.16 +0.5 787,766 + EX31_RS20730 0.19 +0.2 787,767 - EX31_RS20730 0.19 +0.5 787,822 - EX31_RS20730 0.22 -0.1 787,894 + EX31_RS20730 0.25 +1.4 787,895 - EX31_RS20730 0.25 -0.1 788,009 + EX31_RS20730 0.31 -2.5 788,009 + EX31_RS20730 0.31 -0.1 788,009 + EX31_RS20730 0.31 -0.6 788,009 + EX31_RS20730 0.31 -1.0 788,010 - EX31_RS20730 0.31 -1.0 788,010 - EX31_RS20730 0.31 +0.4 788,010 - EX31_RS20730 0.31 -0.3 788,010 - EX31_RS20730 0.31 +0.3 788,010 - EX31_RS20730 0.31 -0.4 788,035 + EX31_RS20730 0.32 -1.6 788,036 - EX31_RS20730 0.32 -2.3 788,036 - EX31_RS20730 0.32 +0.3 788,036 - EX31_RS20730 0.32 +0.2 788,147 + EX31_RS20730 0.38 -0.3 788,148 - EX31_RS20730 0.38 -0.7 788,148 - EX31_RS20730 0.38 -1.2 788,148 - EX31_RS20730 0.38 -0.1 788,195 - EX31_RS20730 0.40 +0.3 788,260 + EX31_RS20730 0.43 -0.0 788,261 - EX31_RS20730 0.43 -0.8 788,261 - EX31_RS20730 0.43 -0.3 788,261 - EX31_RS20730 0.43 -0.5 788,358 - EX31_RS20730 0.48 +0.1 788,358 - EX31_RS20730 0.48 -0.1 788,384 - EX31_RS20730 0.49 -2.7 788,384 - EX31_RS20730 0.49 -1.0 788,626 - EX31_RS20730 0.61 -0.3 788,783 - EX31_RS20730 0.69 -0.8 788,783 - EX31_RS20730 0.69 -0.2 788,842 - EX31_RS20730 0.71 -0.3 789,042 - EX31_RS20730 0.81 +0.0 789,538 - +2.9 789,542 - +1.6 789,569 - +0.9 790,231 - EX31_RS20735 0.22 +0.5 790,235 - EX31_RS20735 0.22 -1.0 790,235 - EX31_RS20735 0.22 -0.5 790,235 - EX31_RS20735 0.22 +0.3 790,235 - EX31_RS20735 0.22 -1.7 790,235 - EX31_RS20735 0.22 +0.0 790,300 + EX31_RS20735 0.24 +1.9 790,301 - EX31_RS20735 0.24 +0.5 790,301 - EX31_RS20735 0.24 +0.0 790,301 - EX31_RS20735 0.24 -0.5 790,301 - EX31_RS20735 0.24 +1.5 790,301 - EX31_RS20735 0.24 +2.0 790,301 - EX31_RS20735 0.24 -0.1 790,301 - EX31_RS20735 0.24 -0.5 790,418 - EX31_RS20735 0.27 -0.8
Or see this region's nucleotide sequence