Strain Fitness in Rahnella sp. WP5 around EX31_RS20190

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS20185 and EX31_RS20190 are separated by 48 nucleotidesEX31_RS20190 and EX31_RS20195 are separated by 56 nucleotides EX31_RS20185: EX31_RS20185 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 665,114 to 666,841 _RS20185 EX31_RS20190: EX31_RS20190 - PTS glucose transporter subunit IIA, at 666,890 to 667,399 _RS20190 EX31_RS20195: EX31_RS20195 - HAMP domain-containing protein, at 667,456 to 668,805 _RS20195 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 666.062 kb on + strand, within EX31_RS20185at 666.062 kb on + strand, within EX31_RS20185at 666.064 kb on + strand, within EX31_RS20185at 666.105 kb on + strand, within EX31_RS20185at 666.105 kb on + strand, within EX31_RS20185at 666.143 kb on + strand, within EX31_RS20185at 666.143 kb on + strand, within EX31_RS20185at 666.144 kb on - strand, within EX31_RS20185at 666.196 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.490 kb on + strand, within EX31_RS20185at 666.491 kb on - strand, within EX31_RS20185at 666.533 kb on + strand, within EX31_RS20185at 666.533 kb on + strand, within EX31_RS20185at 666.555 kb on + strand, within EX31_RS20185at 666.568 kb on + strand, within EX31_RS20185at 666.568 kb on + strand, within EX31_RS20185at 666.578 kb on - strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.646 kb on + strand, within EX31_RS20185at 666.657 kb on + strand, within EX31_RS20185at 666.672 kb on + strandat 666.694 kb on + strandat 666.694 kb on + strandat 666.781 kb on + strandat 666.839 kb on + strandat 666.856 kb on + strandat 666.856 kb on + strandat 666.871 kb on + strandat 666.878 kb on + strandat 666.949 kb on + strand, within EX31_RS20190at 667.045 kb on + strand, within EX31_RS20190at 667.046 kb on - strand, within EX31_RS20190at 667.315 kb on + strand, within EX31_RS20190at 667.354 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.397 kb on + strandat 667.416 kb on + strandat 667.416 kb on + strandat 667.416 kb on + strandat 667.522 kb on + strandat 667.522 kb on + strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.523 kb on - strandat 667.627 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.639 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.686 kb on - strand, within EX31_RS20195at 667.716 kb on + strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.717 kb on - strand, within EX31_RS20195at 667.749 kb on + strand, within EX31_RS20195at 667.749 kb on + strand, within EX31_RS20195at 667.750 kb on - strand, within EX31_RS20195at 667.791 kb on + strand, within EX31_RS20195at 667.792 kb on - strand, within EX31_RS20195at 667.805 kb on + strand, within EX31_RS20195at 667.806 kb on - strand, within EX31_RS20195at 667.806 kb on - strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.812 kb on + strand, within EX31_RS20195at 667.813 kb on - strand, within EX31_RS20195at 667.813 kb on - strand, within EX31_RS20195at 667.916 kb on + strand, within EX31_RS20195at 667.948 kb on - strand, within EX31_RS20195at 668.005 kb on + strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.006 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.158 kb on - strand, within EX31_RS20195at 668.214 kb on + strand, within EX31_RS20195at 668.231 kb on - strand, within EX31_RS20195at 668.263 kb on - strand, within EX31_RS20195at 668.263 kb on - strand, within EX31_RS20195at 668.302 kb on + strand, within EX31_RS20195at 668.303 kb on - strand, within EX31_RS20195at 668.318 kb on - strand, within EX31_RS20195at 668.359 kb on - strand, within EX31_RS20195at 668.391 kb on - strand, within EX31_RS20195

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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666,062 + EX31_RS20185 0.55 +0.8
666,062 + EX31_RS20185 0.55 +1.9
666,064 + EX31_RS20185 0.55 -1.1
666,105 + EX31_RS20185 0.57 +0.5
666,105 + EX31_RS20185 0.57 +0.2
666,143 + EX31_RS20185 0.60 -1.1
666,143 + EX31_RS20185 0.60 +0.5
666,144 - EX31_RS20185 0.60 +2.9
666,196 + EX31_RS20185 0.63 -0.2
666,490 + EX31_RS20185 0.80 +0.3
666,490 + EX31_RS20185 0.80 +2.9
666,490 + EX31_RS20185 0.80 +1.6
666,491 - EX31_RS20185 0.80 +0.3
666,533 + EX31_RS20185 0.82 -0.5
666,533 + EX31_RS20185 0.82 +0.8
666,555 + EX31_RS20185 0.83 -1.1
666,568 + EX31_RS20185 0.84 +0.9
666,568 + EX31_RS20185 0.84 -1.0
666,578 - EX31_RS20185 0.85 +0.3
666,646 + EX31_RS20185 0.89 -1.7
666,646 + EX31_RS20185 0.89 -1.8
666,646 + EX31_RS20185 0.89 +0.5
666,657 + EX31_RS20185 0.89 -0.8
666,672 + +0.9
666,694 + -0.3
666,694 + +0.3
666,781 + -0.2
666,839 + +0.2
666,856 + -0.7
666,856 + +0.3
666,871 + +0.5
666,878 + -1.2
666,949 + EX31_RS20190 0.12 -1.3
667,045 + EX31_RS20190 0.30 -0.7
667,046 - EX31_RS20190 0.31 +2.3
667,315 + EX31_RS20190 0.83 -1.9
667,354 + -0.9
667,397 + -0.4
667,397 + +0.5
667,397 + +0.2
667,397 + +0.0
667,416 + +1.6
667,416 + +0.9
667,416 + -1.5
667,522 + -0.1
667,522 + +0.8
667,523 - +0.2
667,523 - +0.0
667,523 - +0.2
667,523 - +0.0
667,523 - -0.6
667,523 - -2.7
667,627 - EX31_RS20195 0.13 -0.6
667,639 - EX31_RS20195 0.14 +0.4
667,639 - EX31_RS20195 0.14 +1.1
667,639 - EX31_RS20195 0.14 -0.5
667,639 - EX31_RS20195 0.14 +0.4
667,639 - EX31_RS20195 0.14 +0.2
667,686 - EX31_RS20195 0.17 -0.5
667,686 - EX31_RS20195 0.17 +1.0
667,686 - EX31_RS20195 0.17 +0.6
667,686 - EX31_RS20195 0.17 -0.2
667,686 - EX31_RS20195 0.17 +0.5
667,716 + EX31_RS20195 0.19 +1.5
667,717 - EX31_RS20195 0.19 -0.3
667,717 - EX31_RS20195 0.19 +1.2
667,717 - EX31_RS20195 0.19 -0.4
667,717 - EX31_RS20195 0.19 +0.6
667,717 - EX31_RS20195 0.19 +1.0
667,717 - EX31_RS20195 0.19 -0.2
667,749 + EX31_RS20195 0.22 +0.3
667,749 + EX31_RS20195 0.22 -0.5
667,750 - EX31_RS20195 0.22 -0.6
667,791 + EX31_RS20195 0.25 +0.1
667,792 - EX31_RS20195 0.25 -1.2
667,805 + EX31_RS20195 0.26 +0.7
667,806 - EX31_RS20195 0.26 +0.2
667,806 - EX31_RS20195 0.26 +0.2
667,812 + EX31_RS20195 0.26 -0.8
667,812 + EX31_RS20195 0.26 +0.9
667,812 + EX31_RS20195 0.26 -0.4
667,813 - EX31_RS20195 0.26 -1.1
667,813 - EX31_RS20195 0.26 +1.0
667,916 + EX31_RS20195 0.34 +0.9
667,948 - EX31_RS20195 0.36 +1.0
668,005 + EX31_RS20195 0.41 -1.4
668,006 - EX31_RS20195 0.41 +0.3
668,006 - EX31_RS20195 0.41 +0.4
668,006 - EX31_RS20195 0.41 +0.2
668,006 - EX31_RS20195 0.41 -0.4
668,006 - EX31_RS20195 0.41 -0.3
668,006 - EX31_RS20195 0.41 +0.6
668,006 - EX31_RS20195 0.41 +0.0
668,158 - EX31_RS20195 0.52 +0.1
668,158 - EX31_RS20195 0.52 -0.3
668,158 - EX31_RS20195 0.52 -1.0
668,158 - EX31_RS20195 0.52 -0.7
668,158 - EX31_RS20195 0.52 -0.5
668,214 + EX31_RS20195 0.56 +0.2
668,231 - EX31_RS20195 0.57 +0.1
668,263 - EX31_RS20195 0.60 -0.5
668,263 - EX31_RS20195 0.60 -0.0
668,302 + EX31_RS20195 0.63 +1.2
668,303 - EX31_RS20195 0.63 -0.4
668,318 - EX31_RS20195 0.64 +1.0
668,359 - EX31_RS20195 0.67 -0.3
668,391 - EX31_RS20195 0.69 +0.3

Or see this region's nucleotide sequence