Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19340 and EX31_RS19345 overlap by 1 nucleotides EX31_RS19345 and EX31_RS19350 overlap by 14 nucleotides EX31_RS19350 and EX31_RS19355 overlap by 4 nucleotides
EX31_RS19340: EX31_RS19340 - o-succinylbenzoate synthase, at 494,119 to 495,120
_RS19340
EX31_RS19345: EX31_RS19345 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 495,120 to 495,977
_RS19345
EX31_RS19350: EX31_RS19350 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 495,964 to 496,761
_RS19350
EX31_RS19355: EX31_RS19355 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 496,758 to 498,431
_RS19355
Position (kb) 495
496
497 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 494.967 kb on + strand, within EX31_RS19340 at 494.967 kb on + strand, within EX31_RS19340 at 494.968 kb on - strand, within EX31_RS19340 at 494.968 kb on - strand, within EX31_RS19340 at 494.968 kb on - strand, within EX31_RS19340 at 495.096 kb on - strand at 495.122 kb on - strand at 495.128 kb on + strand at 495.129 kb on - strand at 495.129 kb on - strand at 495.129 kb on - strand at 495.205 kb on + strand at 495.205 kb on + strand at 495.205 kb on + strand at 495.205 kb on + strand at 495.205 kb on + strand at 495.205 kb on + strand at 495.205 kb on + strand at 495.206 kb on - strand, within EX31_RS19345 at 495.206 kb on - strand, within EX31_RS19345 at 495.206 kb on - strand, within EX31_RS19345 at 495.206 kb on - strand, within EX31_RS19345 at 495.366 kb on + strand, within EX31_RS19345 at 495.366 kb on + strand, within EX31_RS19345 at 495.366 kb on + strand, within EX31_RS19345 at 495.367 kb on - strand, within EX31_RS19345 at 495.367 kb on - strand, within EX31_RS19345 at 495.367 kb on - strand, within EX31_RS19345 at 495.410 kb on - strand, within EX31_RS19345 at 495.410 kb on - strand, within EX31_RS19345 at 495.468 kb on - strand, within EX31_RS19345 at 495.468 kb on - strand, within EX31_RS19345 at 495.468 kb on - strand, within EX31_RS19345 at 495.469 kb on + strand, within EX31_RS19345 at 495.469 kb on + strand, within EX31_RS19345 at 495.469 kb on + strand, within EX31_RS19345 at 495.469 kb on + strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.470 kb on - strand, within EX31_RS19345 at 495.533 kb on + strand, within EX31_RS19345 at 495.563 kb on + strand, within EX31_RS19345 at 495.563 kb on + strand, within EX31_RS19345 at 495.564 kb on - strand, within EX31_RS19345 at 495.564 kb on - strand, within EX31_RS19345 at 495.564 kb on - strand, within EX31_RS19345 at 495.564 kb on - strand, within EX31_RS19345 at 495.564 kb on - strand, within EX31_RS19345 at 495.872 kb on + strand, within EX31_RS19345 at 495.905 kb on + strand at 495.906 kb on - strand at 495.906 kb on - strand at 495.906 kb on - strand at 495.924 kb on - strand at 495.924 kb on - strand at 495.949 kb on + strand at 495.970 kb on + strand at 495.971 kb on - strand at 496.005 kb on + strand at 496.005 kb on + strand at 496.005 kb on + strand at 496.006 kb on - strand at 496.008 kb on + strand at 496.008 kb on + strand at 496.008 kb on + strand at 496.084 kb on + strand, within EX31_RS19350 at 496.084 kb on + strand, within EX31_RS19350 at 496.117 kb on - strand, within EX31_RS19350 at 496.183 kb on + strand, within EX31_RS19350 at 496.184 kb on - strand, within EX31_RS19350 at 496.342 kb on + strand, within EX31_RS19350 at 496.342 kb on + strand, within EX31_RS19350 at 496.343 kb on - strand, within EX31_RS19350 at 496.455 kb on + strand, within EX31_RS19350 at 496.456 kb on - strand, within EX31_RS19350 at 496.660 kb on + strand, within EX31_RS19350 at 496.660 kb on + strand, within EX31_RS19350 at 496.660 kb on + strand, within EX31_RS19350 at 496.660 kb on + strand, within EX31_RS19350 at 496.661 kb on - strand, within EX31_RS19350 at 496.661 kb on - strand, within EX31_RS19350 at 496.725 kb on + strand at 497.036 kb on + strand, within EX31_RS19355 at 497.036 kb on + strand, within EX31_RS19355 at 497.036 kb on + strand, within EX31_RS19355 at 497.037 kb on - strand, within EX31_RS19355 at 497.089 kb on + strand, within EX31_RS19355 at 497.090 kb on - strand, within EX31_RS19355 at 497.090 kb on - strand, within EX31_RS19355 at 497.102 kb on + strand, within EX31_RS19355 at 497.178 kb on - strand, within EX31_RS19355 at 497.271 kb on + strand, within EX31_RS19355 at 497.272 kb on - strand, within EX31_RS19355 at 497.290 kb on - strand, within EX31_RS19355 at 497.292 kb on + strand, within EX31_RS19355 at 497.293 kb on - strand, within EX31_RS19355 at 497.293 kb on - strand, within EX31_RS19355 at 497.331 kb on + strand, within EX31_RS19355 at 497.332 kb on - strand, within EX31_RS19355 at 497.332 kb on - strand, within EX31_RS19355 at 497.361 kb on + strand, within EX31_RS19355 at 497.361 kb on + strand, within EX31_RS19355 at 497.361 kb on + strand, within EX31_RS19355 at 497.361 kb on + strand, within EX31_RS19355 at 497.362 kb on - strand, within EX31_RS19355 at 497.362 kb on - strand, within EX31_RS19355 at 497.362 kb on - strand, within EX31_RS19355 at 497.431 kb on - strand, within EX31_RS19355 at 497.516 kb on - strand, within EX31_RS19355 at 497.516 kb on - strand, within EX31_RS19355 at 497.608 kb on - strand, within EX31_RS19355
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 494,967 + EX31_RS19340 0.85 +1.2 494,967 + EX31_RS19340 0.85 +1.0 494,968 - EX31_RS19340 0.85 +0.1 494,968 - EX31_RS19340 0.85 +1.0 494,968 - EX31_RS19340 0.85 +0.4 495,096 - -0.8 495,122 - -0.7 495,128 + +0.1 495,129 - -0.3 495,129 - -1.2 495,129 - -0.1 495,205 + -0.2 495,205 + -0.2 495,205 + -0.6 495,205 + -1.3 495,205 + +0.5 495,205 + -0.7 495,205 + -0.1 495,206 - EX31_RS19345 0.10 -0.3 495,206 - EX31_RS19345 0.10 +0.8 495,206 - EX31_RS19345 0.10 -0.2 495,206 - EX31_RS19345 0.10 -0.1 495,366 + EX31_RS19345 0.29 -0.6 495,366 + EX31_RS19345 0.29 -0.4 495,366 + EX31_RS19345 0.29 +0.8 495,367 - EX31_RS19345 0.29 +1.5 495,367 - EX31_RS19345 0.29 +0.1 495,367 - EX31_RS19345 0.29 -2.0 495,410 - EX31_RS19345 0.34 +0.5 495,410 - EX31_RS19345 0.34 -0.3 495,468 - EX31_RS19345 0.41 +0.6 495,468 - EX31_RS19345 0.41 -0.0 495,468 - EX31_RS19345 0.41 -0.6 495,469 + EX31_RS19345 0.41 -1.7 495,469 + EX31_RS19345 0.41 +0.2 495,469 + EX31_RS19345 0.41 -1.0 495,469 + EX31_RS19345 0.41 +0.3 495,470 - EX31_RS19345 0.41 +0.2 495,470 - EX31_RS19345 0.41 -1.5 495,470 - EX31_RS19345 0.41 +0.2 495,470 - EX31_RS19345 0.41 +0.1 495,470 - EX31_RS19345 0.41 -0.3 495,470 - EX31_RS19345 0.41 -0.2 495,470 - EX31_RS19345 0.41 +0.7 495,470 - EX31_RS19345 0.41 +0.0 495,470 - EX31_RS19345 0.41 +0.4 495,470 - EX31_RS19345 0.41 +0.8 495,470 - EX31_RS19345 0.41 +0.4 495,470 - EX31_RS19345 0.41 +1.1 495,470 - EX31_RS19345 0.41 +0.7 495,533 + EX31_RS19345 0.48 -0.5 495,563 + EX31_RS19345 0.52 -0.1 495,563 + EX31_RS19345 0.52 +0.6 495,564 - EX31_RS19345 0.52 +0.3 495,564 - EX31_RS19345 0.52 -0.1 495,564 - EX31_RS19345 0.52 -1.0 495,564 - EX31_RS19345 0.52 +0.3 495,564 - EX31_RS19345 0.52 +0.1 495,872 + EX31_RS19345 0.88 -0.5 495,905 + +1.3 495,906 - +1.2 495,906 - -0.3 495,906 - +0.9 495,924 - -0.2 495,924 - -0.9 495,949 + +0.1 495,970 + +1.2 495,971 - +0.5 496,005 + +2.8 496,005 + -0.2 496,005 + +0.6 496,006 - +0.4 496,008 + +0.6 496,008 + -0.3 496,008 + -2.7 496,084 + EX31_RS19350 0.15 -2.5 496,084 + EX31_RS19350 0.15 -0.1 496,117 - EX31_RS19350 0.19 -1.4 496,183 + EX31_RS19350 0.27 -0.4 496,184 - EX31_RS19350 0.28 -1.9 496,342 + EX31_RS19350 0.47 +0.1 496,342 + EX31_RS19350 0.47 -1.0 496,343 - EX31_RS19350 0.47 +0.1 496,455 + EX31_RS19350 0.62 +0.8 496,456 - EX31_RS19350 0.62 -0.7 496,660 + EX31_RS19350 0.87 -1.9 496,660 + EX31_RS19350 0.87 +1.2 496,660 + EX31_RS19350 0.87 -0.0 496,660 + EX31_RS19350 0.87 -0.4 496,661 - EX31_RS19350 0.87 -0.2 496,661 - EX31_RS19350 0.87 -1.7 496,725 + -0.5 497,036 + EX31_RS19355 0.17 -0.9 497,036 + EX31_RS19355 0.17 +1.2 497,036 + EX31_RS19355 0.17 +0.6 497,037 - EX31_RS19355 0.17 -1.0 497,089 + EX31_RS19355 0.20 +1.2 497,090 - EX31_RS19355 0.20 +0.8 497,090 - EX31_RS19355 0.20 -0.5 497,102 + EX31_RS19355 0.21 +0.4 497,178 - EX31_RS19355 0.25 -0.3 497,271 + EX31_RS19355 0.31 +0.2 497,272 - EX31_RS19355 0.31 +0.8 497,290 - EX31_RS19355 0.32 +0.3 497,292 + EX31_RS19355 0.32 +0.7 497,293 - EX31_RS19355 0.32 +0.3 497,293 - EX31_RS19355 0.32 -0.5 497,331 + EX31_RS19355 0.34 +0.5 497,332 - EX31_RS19355 0.34 -0.6 497,332 - EX31_RS19355 0.34 -1.6 497,361 + EX31_RS19355 0.36 -1.5 497,361 + EX31_RS19355 0.36 -0.0 497,361 + EX31_RS19355 0.36 +0.1 497,361 + EX31_RS19355 0.36 +0.6 497,362 - EX31_RS19355 0.36 +0.4 497,362 - EX31_RS19355 0.36 +0.9 497,362 - EX31_RS19355 0.36 +0.0 497,431 - EX31_RS19355 0.40 +0.5 497,516 - EX31_RS19355 0.45 -0.4 497,516 - EX31_RS19355 0.45 +0.3 497,608 - EX31_RS19355 0.51 +0.7
Or see this region's nucleotide sequence