Strain Fitness in Rahnella sp. WP5 around EX31_RS19310

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS19305 and EX31_RS19310 are separated by 72 nucleotidesEX31_RS19310 and EX31_RS19315 are separated by 0 nucleotidesEX31_RS19315 and EX31_RS19320 are separated by 139 nucleotides EX31_RS19305: EX31_RS19305 - ribonucleoside-diphosphate reductase subunit alpha, at 485,193 to 487,475 _RS19305 EX31_RS19310: EX31_RS19310 - ribonucleotide-diphosphate reductase subunit beta, at 487,548 to 488,678 _RS19310 EX31_RS19315: EX31_RS19315 - 2Fe-2S ferredoxin-like protein, at 488,679 to 488,939 _RS19315 EX31_RS19320: EX31_RS19320 - nicotinamide mononucleotide deamidase-related protein YfaY, at 489,079 to 490,284 _RS19320 Position (kb) 487 488 489Strain fitness (log2 ratio) -2 -1 0 1at 486.578 kb on + strand, within EX31_RS19305at 486.578 kb on + strand, within EX31_RS19305at 486.578 kb on + strand, within EX31_RS19305at 486.578 kb on + strand, within EX31_RS19305at 486.578 kb on + strand, within EX31_RS19305at 486.578 kb on + strand, within EX31_RS19305at 486.725 kb on + strand, within EX31_RS19305at 486.725 kb on + strand, within EX31_RS19305at 486.725 kb on + strand, within EX31_RS19305at 486.725 kb on + strand, within EX31_RS19305at 486.726 kb on - strand, within EX31_RS19305at 486.746 kb on + strand, within EX31_RS19305at 486.746 kb on + strand, within EX31_RS19305at 486.746 kb on + strand, within EX31_RS19305at 486.750 kb on + strand, within EX31_RS19305at 486.750 kb on + strand, within EX31_RS19305at 486.750 kb on + strand, within EX31_RS19305at 486.750 kb on + strand, within EX31_RS19305at 486.756 kb on + strand, within EX31_RS19305at 486.756 kb on + strand, within EX31_RS19305at 486.756 kb on + strand, within EX31_RS19305at 486.759 kb on + strand, within EX31_RS19305at 486.759 kb on + strand, within EX31_RS19305at 486.759 kb on + strand, within EX31_RS19305at 486.837 kb on + strand, within EX31_RS19305at 486.837 kb on + strand, within EX31_RS19305at 486.837 kb on + strand, within EX31_RS19305at 486.837 kb on + strand, within EX31_RS19305at 486.837 kb on + strand, within EX31_RS19305at 486.840 kb on + strand, within EX31_RS19305at 486.840 kb on + strand, within EX31_RS19305at 486.909 kb on + strand, within EX31_RS19305at 486.909 kb on + strand, within EX31_RS19305at 486.935 kb on + strand, within EX31_RS19305at 486.939 kb on + strand, within EX31_RS19305at 486.939 kb on + strand, within EX31_RS19305at 486.939 kb on + strand, within EX31_RS19305at 486.939 kb on + strand, within EX31_RS19305at 486.939 kb on + strand, within EX31_RS19305at 486.939 kb on + strand, within EX31_RS19305at 486.959 kb on + strand, within EX31_RS19305at 486.959 kb on + strand, within EX31_RS19305at 486.959 kb on + strand, within EX31_RS19305at 487.017 kb on + strand, within EX31_RS19305at 487.017 kb on + strand, within EX31_RS19305at 487.017 kb on + strand, within EX31_RS19305at 487.028 kb on + strand, within EX31_RS19305at 487.028 kb on + strand, within EX31_RS19305at 487.167 kb on + strand, within EX31_RS19305at 487.224 kb on + strand, within EX31_RS19305at 487.243 kb on + strand, within EX31_RS19305at 487.287 kb on + strandat 487.287 kb on + strandat 487.287 kb on + strandat 487.380 kb on + strandat 487.380 kb on + strandat 487.380 kb on + strandat 487.380 kb on + strandat 487.383 kb on + strandat 487.383 kb on + strandat 487.383 kb on + strandat 487.383 kb on + strandat 487.383 kb on + strandat 487.383 kb on + strandat 487.414 kb on + strandat 487.414 kb on + strandat 487.554 kb on + strandat 487.555 kb on - strandat 487.898 kb on + strand, within EX31_RS19310at 487.914 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.922 kb on + strand, within EX31_RS19310at 487.923 kb on - strand, within EX31_RS19310at 487.925 kb on + strand, within EX31_RS19310at 487.931 kb on + strand, within EX31_RS19310at 488.019 kb on + strand, within EX31_RS19310at 488.019 kb on + strand, within EX31_RS19310at 488.046 kb on + strand, within EX31_RS19310at 488.046 kb on + strand, within EX31_RS19310at 488.046 kb on + strand, within EX31_RS19310at 488.047 kb on - strand, within EX31_RS19310at 488.049 kb on + strand, within EX31_RS19310at 488.049 kb on + strand, within EX31_RS19310at 488.050 kb on - strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.098 kb on + strand, within EX31_RS19310at 488.102 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.117 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.130 kb on + strand, within EX31_RS19310at 488.167 kb on + strand, within EX31_RS19310at 488.175 kb on + strand, within EX31_RS19310at 488.176 kb on - strand, within EX31_RS19310at 488.415 kb on + strand, within EX31_RS19310at 488.415 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.469 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.478 kb on + strand, within EX31_RS19310at 488.479 kb on - strand, within EX31_RS19310at 488.479 kb on - strand, within EX31_RS19310at 488.496 kb on - strand, within EX31_RS19310at 488.616 kb on + strandat 488.617 kb on - strandat 488.623 kb on + strandat 488.676 kb on + strandat 488.676 kb on + strandat 488.729 kb on + strand, within EX31_RS19315at 488.729 kb on + strand, within EX31_RS19315at 488.730 kb on - strand, within EX31_RS19315at 488.787 kb on + strand, within EX31_RS19315at 488.873 kb on + strand, within EX31_RS19315at 488.893 kb on + strand, within EX31_RS19315at 488.893 kb on + strand, within EX31_RS19315at 489.080 kb on + strandat 489.081 kb on - strandat 489.081 kb on - strandat 489.154 kb on - strandat 489.187 kb on + strandat 489.187 kb on + strandat 489.188 kb on - strandat 489.188 kb on - strandat 489.265 kb on + strand, within EX31_RS19320at 489.266 kb on - strand, within EX31_RS19320at 489.481 kb on + strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320at 489.482 kb on - strand, within EX31_RS19320

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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486,578 + EX31_RS19305 0.61 -0.6
486,578 + EX31_RS19305 0.61 -0.7
486,578 + EX31_RS19305 0.61 -1.6
486,578 + EX31_RS19305 0.61 +0.1
486,578 + EX31_RS19305 0.61 -1.0
486,578 + EX31_RS19305 0.61 -1.0
486,725 + EX31_RS19305 0.67 -0.5
486,725 + EX31_RS19305 0.67 -0.3
486,725 + EX31_RS19305 0.67 +0.0
486,725 + EX31_RS19305 0.67 -1.8
486,726 - EX31_RS19305 0.67 +0.7
486,746 + EX31_RS19305 0.68 -0.8
486,746 + EX31_RS19305 0.68 +0.8
486,746 + EX31_RS19305 0.68 -1.5
486,750 + EX31_RS19305 0.68 -0.9
486,750 + EX31_RS19305 0.68 -0.1
486,750 + EX31_RS19305 0.68 -1.3
486,750 + EX31_RS19305 0.68 -1.4
486,756 + EX31_RS19305 0.68 -0.6
486,756 + EX31_RS19305 0.68 -0.9
486,756 + EX31_RS19305 0.68 -2.1
486,759 + EX31_RS19305 0.69 -0.4
486,759 + EX31_RS19305 0.69 -1.6
486,759 + EX31_RS19305 0.69 -1.4
486,837 + EX31_RS19305 0.72 +0.5
486,837 + EX31_RS19305 0.72 -1.9
486,837 + EX31_RS19305 0.72 -1.0
486,837 + EX31_RS19305 0.72 -0.2
486,837 + EX31_RS19305 0.72 -1.0
486,840 + EX31_RS19305 0.72 -0.8
486,840 + EX31_RS19305 0.72 -0.2
486,909 + EX31_RS19305 0.75 +0.4
486,909 + EX31_RS19305 0.75 -2.4
486,935 + EX31_RS19305 0.76 -0.6
486,939 + EX31_RS19305 0.76 -2.3
486,939 + EX31_RS19305 0.76 -0.5
486,939 + EX31_RS19305 0.76 +0.0
486,939 + EX31_RS19305 0.76 +0.1
486,939 + EX31_RS19305 0.76 -2.1
486,939 + EX31_RS19305 0.76 -0.2
486,959 + EX31_RS19305 0.77 -0.8
486,959 + EX31_RS19305 0.77 +0.0
486,959 + EX31_RS19305 0.77 -0.5
487,017 + EX31_RS19305 0.80 -0.2
487,017 + EX31_RS19305 0.80 -0.9
487,017 + EX31_RS19305 0.80 -1.2
487,028 + EX31_RS19305 0.80 -0.5
487,028 + EX31_RS19305 0.80 -0.5
487,167 + EX31_RS19305 0.86 -0.6
487,224 + EX31_RS19305 0.89 -0.1
487,243 + EX31_RS19305 0.90 -0.5
487,287 + -1.2
487,287 + -1.3
487,287 + -1.2
487,380 + -0.6
487,380 + -0.4
487,380 + -0.9
487,380 + -0.6
487,383 + -2.3
487,383 + -0.5
487,383 + -1.0
487,383 + -1.1
487,383 + -0.7
487,383 + +0.7
487,414 + -0.1
487,414 + +0.4
487,554 + -2.7
487,555 - -0.5
487,898 + EX31_RS19310 0.31 -0.5
487,914 + EX31_RS19310 0.32 -0.5
487,922 + EX31_RS19310 0.33 -0.9
487,922 + EX31_RS19310 0.33 -1.3
487,922 + EX31_RS19310 0.33 -0.0
487,922 + EX31_RS19310 0.33 -1.3
487,922 + EX31_RS19310 0.33 -1.2
487,922 + EX31_RS19310 0.33 -1.0
487,923 - EX31_RS19310 0.33 -1.6
487,925 + EX31_RS19310 0.33 -0.9
487,931 + EX31_RS19310 0.34 -1.4
488,019 + EX31_RS19310 0.42 +0.1
488,019 + EX31_RS19310 0.42 -2.2
488,046 + EX31_RS19310 0.44 -1.1
488,046 + EX31_RS19310 0.44 +1.0
488,046 + EX31_RS19310 0.44 -1.2
488,047 - EX31_RS19310 0.44 -2.1
488,049 + EX31_RS19310 0.44 -0.0
488,049 + EX31_RS19310 0.44 -1.1
488,050 - EX31_RS19310 0.44 +0.0
488,098 + EX31_RS19310 0.49 -1.2
488,098 + EX31_RS19310 0.49 +0.3
488,098 + EX31_RS19310 0.49 -0.0
488,098 + EX31_RS19310 0.49 -1.3
488,098 + EX31_RS19310 0.49 -0.8
488,098 + EX31_RS19310 0.49 -0.4
488,102 + EX31_RS19310 0.49 -0.7
488,117 + EX31_RS19310 0.50 -0.4
488,117 + EX31_RS19310 0.50 -1.3
488,117 + EX31_RS19310 0.50 -0.6
488,117 + EX31_RS19310 0.50 -2.3
488,117 + EX31_RS19310 0.50 -0.8
488,117 + EX31_RS19310 0.50 -1.3
488,117 + EX31_RS19310 0.50 -0.8
488,117 + EX31_RS19310 0.50 -1.2
488,117 + EX31_RS19310 0.50 +0.3
488,130 + EX31_RS19310 0.51 -0.3
488,130 + EX31_RS19310 0.51 -0.4
488,130 + EX31_RS19310 0.51 -1.1
488,130 + EX31_RS19310 0.51 -0.3
488,130 + EX31_RS19310 0.51 +0.5
488,130 + EX31_RS19310 0.51 -1.0
488,130 + EX31_RS19310 0.51 -0.8
488,167 + EX31_RS19310 0.55 -1.1
488,175 + EX31_RS19310 0.55 -0.3
488,176 - EX31_RS19310 0.56 -1.4
488,415 + EX31_RS19310 0.77 +0.0
488,415 + EX31_RS19310 0.77 -0.7
488,469 + EX31_RS19310 0.81 -1.7
488,469 + EX31_RS19310 0.81 -0.5
488,469 + EX31_RS19310 0.81 -0.5
488,469 + EX31_RS19310 0.81 -0.2
488,478 + EX31_RS19310 0.82 -2.2
488,478 + EX31_RS19310 0.82 -1.1
488,478 + EX31_RS19310 0.82 -0.7
488,478 + EX31_RS19310 0.82 -0.5
488,479 - EX31_RS19310 0.82 -0.6
488,479 - EX31_RS19310 0.82 -0.4
488,496 - EX31_RS19310 0.84 +0.1
488,616 + -0.2
488,617 - +0.4
488,623 + -1.0
488,676 + -0.3
488,676 + -0.7
488,729 + EX31_RS19315 0.19 -0.1
488,729 + EX31_RS19315 0.19 -0.2
488,730 - EX31_RS19315 0.20 +0.6
488,787 + EX31_RS19315 0.41 -0.1
488,873 + EX31_RS19315 0.74 -0.6
488,893 + EX31_RS19315 0.82 -0.4
488,893 + EX31_RS19315 0.82 -0.2
489,080 + -0.3
489,081 - -0.8
489,081 - -0.9
489,154 - +0.1
489,187 + +1.1
489,187 + -0.3
489,188 - -0.2
489,188 - +1.3
489,265 + EX31_RS19320 0.15 +0.5
489,266 - EX31_RS19320 0.16 +0.5
489,481 + EX31_RS19320 0.33 +0.5
489,482 - EX31_RS19320 0.33 +0.0
489,482 - EX31_RS19320 0.33 +0.5
489,482 - EX31_RS19320 0.33 +0.5
489,482 - EX31_RS19320 0.33 +0.1

Or see this region's nucleotide sequence