Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18785 and EX31_RS18790 overlap by 4 nucleotides EX31_RS18790 and EX31_RS18795 are separated by 27 nucleotides EX31_RS18795 and EX31_RS18800 are separated by 3 nucleotides EX31_RS18800 and EX31_RS18805 are separated by 101 nucleotides
EX31_RS18785: EX31_RS18785 - DUF2384 domain-containing protein, at 342,848 to 343,309
_RS18785
EX31_RS18790: EX31_RS18790 - RES domain-containing protein, at 343,306 to 343,764
_RS18790
EX31_RS18795: EX31_RS18795 - DMT family transporter, at 343,792 to 344,244
_RS18795
EX31_RS18800: EX31_RS18800 - DMT family transporter, at 344,248 to 344,682
_RS18800
EX31_RS18805: EX31_RS18805 - LysR family transcriptional regulator, at 344,784 to 345,713
_RS18805
Position (kb) 343
344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 342.811 kb on + strand at 342.952 kb on - strand, within EX31_RS18785 at 342.982 kb on + strand, within EX31_RS18785 at 342.983 kb on - strand, within EX31_RS18785 at 342.983 kb on - strand, within EX31_RS18785 at 342.985 kb on + strand, within EX31_RS18785 at 342.985 kb on + strand, within EX31_RS18785 at 342.985 kb on + strand, within EX31_RS18785 at 342.986 kb on - strand, within EX31_RS18785 at 342.986 kb on - strand, within EX31_RS18785 at 342.997 kb on + strand, within EX31_RS18785 at 342.998 kb on - strand, within EX31_RS18785 at 343.000 kb on + strand, within EX31_RS18785 at 343.029 kb on + strand, within EX31_RS18785 at 343.061 kb on + strand, within EX31_RS18785 at 343.061 kb on + strand, within EX31_RS18785 at 343.061 kb on + strand, within EX31_RS18785 at 343.062 kb on - strand, within EX31_RS18785 at 343.062 kb on - strand, within EX31_RS18785 at 343.062 kb on - strand, within EX31_RS18785 at 343.062 kb on - strand, within EX31_RS18785 at 343.062 kb on - strand, within EX31_RS18785 at 343.062 kb on - strand, within EX31_RS18785 at 343.062 kb on - strand, within EX31_RS18785 at 343.092 kb on + strand, within EX31_RS18785 at 343.092 kb on + strand, within EX31_RS18785 at 343.321 kb on - strand at 343.376 kb on - strand, within EX31_RS18790 at 343.414 kb on + strand, within EX31_RS18790 at 343.414 kb on + strand, within EX31_RS18790 at 343.414 kb on + strand, within EX31_RS18790 at 343.490 kb on - strand, within EX31_RS18790 at 343.491 kb on + strand, within EX31_RS18790 at 343.491 kb on + strand, within EX31_RS18790 at 343.491 kb on + strand, within EX31_RS18790 at 343.492 kb on - strand, within EX31_RS18790 at 343.492 kb on - strand, within EX31_RS18790 at 343.627 kb on + strand, within EX31_RS18790 at 343.627 kb on + strand, within EX31_RS18790 at 343.627 kb on + strand, within EX31_RS18790 at 343.627 kb on + strand, within EX31_RS18790 at 343.628 kb on - strand, within EX31_RS18790 at 343.669 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.676 kb on + strand, within EX31_RS18790 at 343.677 kb on - strand, within EX31_RS18790 at 343.677 kb on - strand, within EX31_RS18790 at 343.679 kb on + strand, within EX31_RS18790 at 343.679 kb on + strand, within EX31_RS18790 at 343.679 kb on + strand, within EX31_RS18790 at 343.679 kb on + strand, within EX31_RS18790 at 343.679 kb on + strand, within EX31_RS18790 at 343.679 kb on + strand, within EX31_RS18790 at 343.679 kb on + strand, within EX31_RS18790 at 343.680 kb on - strand, within EX31_RS18790 at 343.680 kb on - strand, within EX31_RS18790 at 343.680 kb on - strand, within EX31_RS18790 at 343.683 kb on + strand, within EX31_RS18790 at 343.839 kb on + strand, within EX31_RS18795 at 343.839 kb on + strand, within EX31_RS18795 at 343.840 kb on - strand, within EX31_RS18795 at 344.006 kb on + strand, within EX31_RS18795 at 344.006 kb on + strand, within EX31_RS18795 at 344.006 kb on + strand, within EX31_RS18795 at 344.006 kb on + strand, within EX31_RS18795 at 344.006 kb on + strand, within EX31_RS18795 at 344.007 kb on - strand, within EX31_RS18795 at 344.007 kb on - strand, within EX31_RS18795 at 344.007 kb on - strand, within EX31_RS18795 at 344.020 kb on + strand, within EX31_RS18795 at 344.020 kb on + strand, within EX31_RS18795 at 344.104 kb on - strand, within EX31_RS18795 at 344.165 kb on - strand, within EX31_RS18795 at 344.191 kb on - strand, within EX31_RS18795 at 344.221 kb on + strand at 344.222 kb on - strand at 344.222 kb on - strand at 344.224 kb on + strand at 344.224 kb on + strand at 344.225 kb on - strand at 344.225 kb on - strand at 344.225 kb on - strand at 344.346 kb on - strand, within EX31_RS18800 at 344.447 kb on + strand, within EX31_RS18800 at 344.447 kb on + strand, within EX31_RS18800 at 344.447 kb on + strand, within EX31_RS18800 at 344.447 kb on + strand, within EX31_RS18800 at 344.448 kb on - strand, within EX31_RS18800 at 344.448 kb on - strand, within EX31_RS18800 at 344.448 kb on - strand, within EX31_RS18800 at 344.448 kb on - strand, within EX31_RS18800 at 344.448 kb on - strand, within EX31_RS18800 at 344.448 kb on - strand, within EX31_RS18800 at 344.448 kb on - strand, within EX31_RS18800 at 344.568 kb on + strand, within EX31_RS18800 at 344.568 kb on + strand, within EX31_RS18800 at 344.569 kb on - strand, within EX31_RS18800 at 344.718 kb on + strand at 344.718 kb on + strand at 344.720 kb on + strand at 344.720 kb on + strand at 344.720 kb on + strand at 344.720 kb on + strand at 344.721 kb on - strand at 344.721 kb on - strand at 344.762 kb on + strand at 344.763 kb on - strand at 344.775 kb on + strand at 344.795 kb on + strand at 344.807 kb on + strand at 344.808 kb on - strand at 344.808 kb on - strand at 344.819 kb on - strand at 344.826 kb on + strand at 344.826 kb on + strand at 344.826 kb on + strand at 344.826 kb on + strand at 344.826 kb on + strand at 344.827 kb on - strand at 344.929 kb on + strand, within EX31_RS18805 at 344.929 kb on + strand, within EX31_RS18805 at 344.929 kb on + strand, within EX31_RS18805 at 344.929 kb on + strand, within EX31_RS18805 at 344.929 kb on + strand, within EX31_RS18805 at 344.946 kb on + strand, within EX31_RS18805 at 345.143 kb on + strand, within EX31_RS18805 at 345.144 kb on - strand, within EX31_RS18805 at 345.192 kb on - strand, within EX31_RS18805
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 342,811 + -0.1 342,952 - EX31_RS18785 0.23 -0.3 342,982 + EX31_RS18785 0.29 -0.7 342,983 - EX31_RS18785 0.29 +1.8 342,983 - EX31_RS18785 0.29 +0.5 342,985 + EX31_RS18785 0.30 +1.0 342,985 + EX31_RS18785 0.30 +0.9 342,985 + EX31_RS18785 0.30 +1.5 342,986 - EX31_RS18785 0.30 -0.9 342,986 - EX31_RS18785 0.30 +0.3 342,997 + EX31_RS18785 0.32 +1.8 342,998 - EX31_RS18785 0.32 -0.1 343,000 + EX31_RS18785 0.33 +0.9 343,029 + EX31_RS18785 0.39 -0.3 343,061 + EX31_RS18785 0.46 +1.1 343,061 + EX31_RS18785 0.46 +1.1 343,061 + EX31_RS18785 0.46 +0.3 343,062 - EX31_RS18785 0.46 -0.1 343,062 - EX31_RS18785 0.46 +1.2 343,062 - EX31_RS18785 0.46 +0.1 343,062 - EX31_RS18785 0.46 +0.9 343,062 - EX31_RS18785 0.46 -2.2 343,062 - EX31_RS18785 0.46 +0.8 343,062 - EX31_RS18785 0.46 -0.2 343,092 + EX31_RS18785 0.53 +1.2 343,092 + EX31_RS18785 0.53 +0.3 343,321 - +1.2 343,376 - EX31_RS18790 0.15 +0.1 343,414 + EX31_RS18790 0.24 -0.2 343,414 + EX31_RS18790 0.24 -1.1 343,414 + EX31_RS18790 0.24 -0.0 343,490 - EX31_RS18790 0.40 +0.0 343,491 + EX31_RS18790 0.40 +0.8 343,491 + EX31_RS18790 0.40 -0.1 343,491 + EX31_RS18790 0.40 +0.2 343,492 - EX31_RS18790 0.41 +0.1 343,492 - EX31_RS18790 0.41 -0.2 343,627 + EX31_RS18790 0.70 -0.2 343,627 + EX31_RS18790 0.70 +0.1 343,627 + EX31_RS18790 0.70 -0.5 343,627 + EX31_RS18790 0.70 -0.5 343,628 - EX31_RS18790 0.70 +0.6 343,669 + EX31_RS18790 0.79 -0.3 343,676 + EX31_RS18790 0.81 +0.1 343,676 + EX31_RS18790 0.81 +0.2 343,676 + EX31_RS18790 0.81 +0.6 343,676 + EX31_RS18790 0.81 +0.5 343,676 + EX31_RS18790 0.81 +0.1 343,676 + EX31_RS18790 0.81 -0.5 343,676 + EX31_RS18790 0.81 -1.1 343,676 + EX31_RS18790 0.81 +0.2 343,677 - EX31_RS18790 0.81 +0.1 343,677 - EX31_RS18790 0.81 +1.0 343,679 + EX31_RS18790 0.81 +0.4 343,679 + EX31_RS18790 0.81 +0.2 343,679 + EX31_RS18790 0.81 +0.5 343,679 + EX31_RS18790 0.81 -0.2 343,679 + EX31_RS18790 0.81 +0.3 343,679 + EX31_RS18790 0.81 -0.3 343,679 + EX31_RS18790 0.81 +0.9 343,680 - EX31_RS18790 0.81 +0.3 343,680 - EX31_RS18790 0.81 -2.1 343,680 - EX31_RS18790 0.81 -0.1 343,683 + EX31_RS18790 0.82 -1.7 343,839 + EX31_RS18795 0.10 -0.2 343,839 + EX31_RS18795 0.10 -0.1 343,840 - EX31_RS18795 0.11 -0.4 344,006 + EX31_RS18795 0.47 -1.7 344,006 + EX31_RS18795 0.47 -0.9 344,006 + EX31_RS18795 0.47 -0.5 344,006 + EX31_RS18795 0.47 -0.4 344,006 + EX31_RS18795 0.47 -0.6 344,007 - EX31_RS18795 0.47 -0.5 344,007 - EX31_RS18795 0.47 -1.5 344,007 - EX31_RS18795 0.47 -2.0 344,020 + EX31_RS18795 0.50 -0.1 344,020 + EX31_RS18795 0.50 +0.6 344,104 - EX31_RS18795 0.69 -0.3 344,165 - EX31_RS18795 0.82 -1.2 344,191 - EX31_RS18795 0.88 +1.0 344,221 + +1.7 344,222 - +0.5 344,222 - +0.6 344,224 + +0.2 344,224 + -2.0 344,225 - +0.3 344,225 - -1.4 344,225 - -0.0 344,346 - EX31_RS18800 0.23 +0.1 344,447 + EX31_RS18800 0.46 +0.8 344,447 + EX31_RS18800 0.46 +0.5 344,447 + EX31_RS18800 0.46 -1.8 344,447 + EX31_RS18800 0.46 -0.6 344,448 - EX31_RS18800 0.46 -1.9 344,448 - EX31_RS18800 0.46 +0.7 344,448 - EX31_RS18800 0.46 +0.3 344,448 - EX31_RS18800 0.46 -0.6 344,448 - EX31_RS18800 0.46 +2.1 344,448 - EX31_RS18800 0.46 +0.4 344,448 - EX31_RS18800 0.46 +0.5 344,568 + EX31_RS18800 0.74 +1.2 344,568 + EX31_RS18800 0.74 -0.1 344,569 - EX31_RS18800 0.74 -0.9 344,718 + -0.1 344,718 + -0.5 344,720 + -0.2 344,720 + +0.2 344,720 + +0.3 344,720 + +0.1 344,721 - -0.2 344,721 - -0.3 344,762 + -0.5 344,763 - -1.1 344,775 + +1.6 344,795 + -0.1 344,807 + -0.6 344,808 - -2.4 344,808 - -0.7 344,819 - +0.9 344,826 + -1.0 344,826 + -0.1 344,826 + -0.2 344,826 + +0.1 344,826 + -0.7 344,827 - -0.8 344,929 + EX31_RS18805 0.16 -0.3 344,929 + EX31_RS18805 0.16 -0.1 344,929 + EX31_RS18805 0.16 +0.5 344,929 + EX31_RS18805 0.16 +0.4 344,929 + EX31_RS18805 0.16 -0.0 344,946 + EX31_RS18805 0.17 -0.1 345,143 + EX31_RS18805 0.39 +1.1 345,144 - EX31_RS18805 0.39 -0.3 345,192 - EX31_RS18805 0.44 -0.1
Or see this region's nucleotide sequence