Strain Fitness in Rahnella sp. WP5 around EX31_RS18720

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18715 and EX31_RS18720 are separated by 11 nucleotidesEX31_RS18720 and EX31_RS18725 are separated by 63 nucleotidesEX31_RS18725 and EX31_RS18730 are separated by 8 nucleotides EX31_RS18715: EX31_RS18715 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 323,876 to 325,000 _RS18715 EX31_RS18720: EX31_RS18720 - S-formylglutathione hydrolase, at 325,012 to 325,869 _RS18720 EX31_RS18725: EX31_RS18725 - glutathione ABC transporter permease GsiD, at 325,933 to 326,853 _RS18725 EX31_RS18730: EX31_RS18730 - glutathione ABC transporter permease GsiC, at 326,862 to 327,782 _RS18730 Position (kb) 325 326Strain fitness (log2 ratio) -2 -1 0 1 2at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.017 kb on + strand, within EX31_RS18715at 324.018 kb on - strand, within EX31_RS18715at 324.146 kb on + strand, within EX31_RS18715at 324.146 kb on + strand, within EX31_RS18715at 324.146 kb on + strand, within EX31_RS18715at 324.147 kb on - strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.169 kb on + strand, within EX31_RS18715at 324.170 kb on - strand, within EX31_RS18715at 324.227 kb on - strand, within EX31_RS18715at 324.227 kb on - strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.287 kb on + strand, within EX31_RS18715at 324.288 kb on - strand, within EX31_RS18715at 324.288 kb on - strand, within EX31_RS18715at 324.288 kb on - strand, within EX31_RS18715at 324.314 kb on + strand, within EX31_RS18715at 324.673 kb on + strand, within EX31_RS18715at 324.673 kb on + strand, within EX31_RS18715at 324.674 kb on - strand, within EX31_RS18715at 324.674 kb on - strand, within EX31_RS18715at 324.872 kb on + strand, within EX31_RS18715at 324.873 kb on - strand, within EX31_RS18715at 324.970 kb on + strandat 324.970 kb on + strandat 324.971 kb on - strandat 324.991 kb on + strandat 324.994 kb on + strandat 324.994 kb on + strandat 324.994 kb on + strandat 324.994 kb on + strandat 324.994 kb on + strandat 324.995 kb on - strandat 324.995 kb on - strandat 324.995 kb on - strandat 324.995 kb on - strandat 324.995 kb on - strandat 324.995 kb on - strandat 324.995 kb on - strandat 324.995 kb on - strandat 324.998 kb on + strandat 324.998 kb on + strandat 324.998 kb on + strandat 324.998 kb on + strandat 324.999 kb on - strandat 324.999 kb on - strandat 324.999 kb on - strandat 324.999 kb on - strandat 324.999 kb on - strandat 325.031 kb on + strandat 325.031 kb on + strandat 325.031 kb on + strandat 325.032 kb on - strandat 325.080 kb on + strandat 325.081 kb on - strandat 325.081 kb on - strandat 325.120 kb on + strand, within EX31_RS18720at 325.120 kb on + strand, within EX31_RS18720at 325.121 kb on - strand, within EX31_RS18720at 325.121 kb on - strand, within EX31_RS18720at 325.162 kb on + strand, within EX31_RS18720at 325.185 kb on + strand, within EX31_RS18720at 325.375 kb on + strand, within EX31_RS18720at 325.375 kb on + strand, within EX31_RS18720at 325.375 kb on + strand, within EX31_RS18720at 325.375 kb on + strand, within EX31_RS18720at 325.376 kb on - strand, within EX31_RS18720at 325.376 kb on - strand, within EX31_RS18720at 325.381 kb on + strand, within EX31_RS18720at 325.381 kb on + strand, within EX31_RS18720at 325.566 kb on + strand, within EX31_RS18720at 325.567 kb on - strand, within EX31_RS18720at 325.567 kb on - strand, within EX31_RS18720at 325.567 kb on - strand, within EX31_RS18720at 325.567 kb on - strand, within EX31_RS18720at 325.583 kb on - strand, within EX31_RS18720at 325.611 kb on - strand, within EX31_RS18720at 325.615 kb on + strand, within EX31_RS18720at 325.615 kb on + strand, within EX31_RS18720at 325.715 kb on + strand, within EX31_RS18720at 325.715 kb on + strand, within EX31_RS18720at 325.715 kb on + strand, within EX31_RS18720at 325.716 kb on - strand, within EX31_RS18720at 325.787 kb on - strandat 325.798 kb on + strandat 325.799 kb on - strandat 325.803 kb on + strandat 325.803 kb on + strandat 325.804 kb on - strandat 325.881 kb on + strandat 325.881 kb on + strandat 325.881 kb on + strandat 325.887 kb on + strandat 325.887 kb on + strandat 325.997 kb on - strandat 326.027 kb on - strand, within EX31_RS18725at 326.053 kb on - strand, within EX31_RS18725at 326.172 kb on - strand, within EX31_RS18725at 326.172 kb on - strand, within EX31_RS18725at 326.260 kb on - strand, within EX31_RS18725at 326.260 kb on - strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.261 kb on + strand, within EX31_RS18725at 326.262 kb on - strand, within EX31_RS18725at 326.262 kb on - strand, within EX31_RS18725at 326.262 kb on - strand, within EX31_RS18725at 326.459 kb on + strand, within EX31_RS18725at 326.460 kb on - strand, within EX31_RS18725at 326.460 kb on - strand, within EX31_RS18725at 326.460 kb on - strand, within EX31_RS18725at 326.460 kb on - strand, within EX31_RS18725at 326.460 kb on - strand, within EX31_RS18725at 326.568 kb on + strand, within EX31_RS18725at 326.569 kb on - strand, within EX31_RS18725at 326.634 kb on - strand, within EX31_RS18725at 326.859 kb on + strandat 326.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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324,017 + EX31_RS18715 0.13 -0.1
324,017 + EX31_RS18715 0.13 -0.1
324,017 + EX31_RS18715 0.13 -1.8
324,017 + EX31_RS18715 0.13 +0.1
324,017 + EX31_RS18715 0.13 +0.4
324,017 + EX31_RS18715 0.13 -0.9
324,017 + EX31_RS18715 0.13 -0.3
324,017 + EX31_RS18715 0.13 +0.2
324,018 - EX31_RS18715 0.13 -0.9
324,146 + EX31_RS18715 0.24 +0.4
324,146 + EX31_RS18715 0.24 +0.7
324,146 + EX31_RS18715 0.24 -0.7
324,147 - EX31_RS18715 0.24 +0.8
324,169 + EX31_RS18715 0.26 -0.5
324,169 + EX31_RS18715 0.26 +1.5
324,169 + EX31_RS18715 0.26 -0.8
324,169 + EX31_RS18715 0.26 -0.2
324,169 + EX31_RS18715 0.26 -0.7
324,169 + EX31_RS18715 0.26 +0.4
324,170 - EX31_RS18715 0.26 -0.0
324,227 - EX31_RS18715 0.31 +0.4
324,227 - EX31_RS18715 0.31 -0.4
324,287 + EX31_RS18715 0.37 +1.5
324,287 + EX31_RS18715 0.37 +0.1
324,287 + EX31_RS18715 0.37 +0.6
324,287 + EX31_RS18715 0.37 +0.2
324,287 + EX31_RS18715 0.37 +1.0
324,288 - EX31_RS18715 0.37 +0.5
324,288 - EX31_RS18715 0.37 -1.3
324,288 - EX31_RS18715 0.37 +0.6
324,314 + EX31_RS18715 0.39 -0.8
324,673 + EX31_RS18715 0.71 -0.7
324,673 + EX31_RS18715 0.71 -0.5
324,674 - EX31_RS18715 0.71 +0.6
324,674 - EX31_RS18715 0.71 -0.3
324,872 + EX31_RS18715 0.89 +0.4
324,873 - EX31_RS18715 0.89 -1.1
324,970 + +0.9
324,970 + +1.9
324,971 - +2.0
324,991 + -0.5
324,994 + -0.0
324,994 + +0.1
324,994 + -0.3
324,994 + -0.5
324,994 + +0.4
324,995 - -1.4
324,995 - +0.1
324,995 - -0.5
324,995 - +0.3
324,995 - -0.3
324,995 - +0.8
324,995 - +1.2
324,995 - +1.0
324,998 + +0.2
324,998 + +0.2
324,998 + +0.1
324,998 + +0.4
324,999 - +0.8
324,999 - +0.1
324,999 - -0.3
324,999 - +0.2
324,999 - -0.4
325,031 + +0.0
325,031 + -0.3
325,031 + -0.3
325,032 - -0.4
325,080 + +0.4
325,081 - -0.7
325,081 - -0.4
325,120 + EX31_RS18720 0.13 +0.8
325,120 + EX31_RS18720 0.13 -0.9
325,121 - EX31_RS18720 0.13 +0.8
325,121 - EX31_RS18720 0.13 -0.3
325,162 + EX31_RS18720 0.17 +0.3
325,185 + EX31_RS18720 0.20 +0.2
325,375 + EX31_RS18720 0.42 +0.2
325,375 + EX31_RS18720 0.42 -0.2
325,375 + EX31_RS18720 0.42 -0.4
325,375 + EX31_RS18720 0.42 -0.6
325,376 - EX31_RS18720 0.42 -1.3
325,376 - EX31_RS18720 0.42 +1.4
325,381 + EX31_RS18720 0.43 -0.8
325,381 + EX31_RS18720 0.43 -1.4
325,566 + EX31_RS18720 0.65 +0.2
325,567 - EX31_RS18720 0.65 +0.7
325,567 - EX31_RS18720 0.65 -0.7
325,567 - EX31_RS18720 0.65 +0.5
325,567 - EX31_RS18720 0.65 +1.9
325,583 - EX31_RS18720 0.67 -0.2
325,611 - EX31_RS18720 0.70 -0.0
325,615 + EX31_RS18720 0.70 +0.2
325,615 + EX31_RS18720 0.70 -0.7
325,715 + EX31_RS18720 0.82 -0.8
325,715 + EX31_RS18720 0.82 +0.3
325,715 + EX31_RS18720 0.82 -1.1
325,716 - EX31_RS18720 0.82 +0.7
325,787 - -0.0
325,798 + -0.1
325,799 - +0.3
325,803 + -0.5
325,803 + -0.6
325,804 - +1.6
325,881 + +0.3
325,881 + -0.5
325,881 + -0.3
325,887 + -0.1
325,887 + +0.0
325,997 - +0.1
326,027 - EX31_RS18725 0.10 -1.0
326,053 - EX31_RS18725 0.13 -0.4
326,172 - EX31_RS18725 0.26 -1.4
326,172 - EX31_RS18725 0.26 +0.7
326,260 - EX31_RS18725 0.36 -0.7
326,260 - EX31_RS18725 0.36 -0.3
326,261 + EX31_RS18725 0.36 +0.8
326,261 + EX31_RS18725 0.36 -0.8
326,261 + EX31_RS18725 0.36 -0.7
326,261 + EX31_RS18725 0.36 -0.5
326,261 + EX31_RS18725 0.36 -1.0
326,261 + EX31_RS18725 0.36 +0.2
326,261 + EX31_RS18725 0.36 -0.6
326,261 + EX31_RS18725 0.36 -0.0
326,261 + EX31_RS18725 0.36 +0.5
326,262 - EX31_RS18725 0.36 -0.8
326,262 - EX31_RS18725 0.36 -0.8
326,262 - EX31_RS18725 0.36 -0.4
326,459 + EX31_RS18725 0.57 -2.7
326,460 - EX31_RS18725 0.57 -0.5
326,460 - EX31_RS18725 0.57 -0.2
326,460 - EX31_RS18725 0.57 -0.6
326,460 - EX31_RS18725 0.57 +0.5
326,460 - EX31_RS18725 0.57 +0.4
326,568 + EX31_RS18725 0.69 +0.2
326,569 - EX31_RS18725 0.69 -0.6
326,634 - EX31_RS18725 0.76 +1.4
326,859 + -1.3
326,860 - +1.0

Or see this region's nucleotide sequence