Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18355 and EX31_RS18360 overlap by 4 nucleotides EX31_RS18360 and EX31_RS18365 overlap by 17 nucleotides EX31_RS18365 and EX31_RS18370 are separated by 2 nucleotides EX31_RS18370 and EX31_RS18375 overlap by 1 nucleotides EX31_RS18375 and EX31_RS18380 are separated by 95 nucleotides
EX31_RS18355: EX31_RS18355 - LysB family phage lysis regulatory protein, at 243,405 to 243,827
_RS18355
EX31_RS18360: EX31_RS18360 - lysozyme, at 243,824 to 244,333
_RS18360
EX31_RS18365: EX31_RS18365 - hypothetical protein, at 244,317 to 244,526
_RS18365
EX31_RS18370: EX31_RS18370 - tail protein X, at 244,529 to 244,732
_RS18370
EX31_RS18375: EX31_RS18375 - head completion/stabilization protein, at 244,732 to 245,226
_RS18375
EX31_RS18380: EX31_RS18380 - terminase, at 245,322 to 246,068
_RS18380
Position (kb) 244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.581 kb on + strand, within EX31_RS18355 at 243.581 kb on + strand, within EX31_RS18355 at 243.582 kb on - strand, within EX31_RS18355 at 243.582 kb on - strand, within EX31_RS18355 at 243.721 kb on - strand, within EX31_RS18355 at 243.721 kb on - strand, within EX31_RS18355 at 243.750 kb on + strand, within EX31_RS18355 at 243.751 kb on - strand, within EX31_RS18355 at 243.751 kb on - strand, within EX31_RS18355 at 243.751 kb on - strand, within EX31_RS18355 at 243.804 kb on + strand at 243.820 kb on + strand at 243.820 kb on + strand at 243.820 kb on + strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.821 kb on - strand at 243.852 kb on - strand at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.903 kb on + strand, within EX31_RS18360 at 243.904 kb on - strand, within EX31_RS18360 at 243.904 kb on - strand, within EX31_RS18360 at 243.904 kb on - strand, within EX31_RS18360 at 243.904 kb on - strand, within EX31_RS18360 at 243.960 kb on + strand, within EX31_RS18360 at 243.976 kb on + strand, within EX31_RS18360 at 244.026 kb on + strand, within EX31_RS18360 at 244.027 kb on - strand, within EX31_RS18360 at 244.027 kb on - strand, within EX31_RS18360 at 244.027 kb on - strand, within EX31_RS18360 at 244.027 kb on - strand, within EX31_RS18360 at 244.027 kb on - strand, within EX31_RS18360 at 244.061 kb on - strand, within EX31_RS18360 at 244.061 kb on - strand, within EX31_RS18360 at 244.123 kb on + strand, within EX31_RS18360 at 244.123 kb on + strand, within EX31_RS18360 at 244.375 kb on + strand, within EX31_RS18365 at 244.515 kb on + strand at 244.516 kb on - strand at 244.539 kb on - strand at 244.644 kb on - strand, within EX31_RS18370 at 244.677 kb on + strand, within EX31_RS18370 at 244.677 kb on + strand, within EX31_RS18370 at 244.678 kb on - strand, within EX31_RS18370 at 244.810 kb on + strand, within EX31_RS18375 at 244.810 kb on + strand, within EX31_RS18375 at 244.862 kb on + strand, within EX31_RS18375 at 244.862 kb on + strand, within EX31_RS18375 at 244.863 kb on - strand, within EX31_RS18375 at 244.863 kb on - strand, within EX31_RS18375 at 244.863 kb on - strand, within EX31_RS18375 at 244.881 kb on - strand, within EX31_RS18375 at 244.980 kb on + strand, within EX31_RS18375 at 245.015 kb on + strand, within EX31_RS18375 at 245.015 kb on + strand, within EX31_RS18375 at 245.015 kb on + strand, within EX31_RS18375 at 245.016 kb on - strand, within EX31_RS18375 at 245.016 kb on - strand, within EX31_RS18375 at 245.049 kb on + strand, within EX31_RS18375 at 245.049 kb on + strand, within EX31_RS18375 at 245.049 kb on + strand, within EX31_RS18375 at 245.050 kb on - strand, within EX31_RS18375 at 245.080 kb on + strand, within EX31_RS18375 at 245.080 kb on + strand, within EX31_RS18375 at 245.080 kb on + strand, within EX31_RS18375 at 245.080 kb on + strand, within EX31_RS18375 at 245.081 kb on - strand, within EX31_RS18375 at 245.081 kb on - strand, within EX31_RS18375 at 245.097 kb on + strand, within EX31_RS18375 at 245.098 kb on - strand, within EX31_RS18375 at 245.142 kb on + strand, within EX31_RS18375 at 245.142 kb on + strand, within EX31_RS18375 at 245.143 kb on - strand, within EX31_RS18375 at 245.185 kb on + strand at 245.221 kb on - strand at 245.241 kb on + strand at 245.241 kb on + strand at 245.241 kb on + strand at 245.242 kb on - strand at 245.242 kb on - strand at 245.242 kb on - strand at 245.324 kb on - strand at 245.375 kb on + strand at 245.375 kb on + strand at 245.376 kb on - strand at 245.376 kb on - strand at 245.451 kb on + strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.452 kb on - strand, within EX31_RS18380 at 245.499 kb on + strand, within EX31_RS18380 at 245.499 kb on + strand, within EX31_RS18380 at 245.499 kb on + strand, within EX31_RS18380 at 245.507 kb on + strand, within EX31_RS18380 at 245.507 kb on + strand, within EX31_RS18380 at 245.553 kb on - strand, within EX31_RS18380 at 245.606 kb on + strand, within EX31_RS18380 at 245.622 kb on + strand, within EX31_RS18380 at 245.622 kb on + strand, within EX31_RS18380 at 245.622 kb on + strand, within EX31_RS18380 at 245.622 kb on + strand, within EX31_RS18380 at 245.695 kb on - strand, within EX31_RS18380 at 245.695 kb on - strand, within EX31_RS18380 at 245.698 kb on + strand, within EX31_RS18380 at 245.699 kb on - strand, within EX31_RS18380 at 245.699 kb on - strand, within EX31_RS18380 at 245.699 kb on - strand, within EX31_RS18380
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 243,581 + EX31_RS18355 0.42 -0.1 243,581 + EX31_RS18355 0.42 -1.2 243,582 - EX31_RS18355 0.42 -0.6 243,582 - EX31_RS18355 0.42 -0.2 243,721 - EX31_RS18355 0.75 +0.8 243,721 - EX31_RS18355 0.75 -0.1 243,750 + EX31_RS18355 0.82 -0.1 243,751 - EX31_RS18355 0.82 -0.8 243,751 - EX31_RS18355 0.82 -0.4 243,751 - EX31_RS18355 0.82 -0.3 243,804 + -1.7 243,820 + +0.0 243,820 + -0.7 243,820 + -0.1 243,821 - -2.3 243,821 - -1.5 243,821 - +1.5 243,821 - +2.0 243,821 - +0.3 243,821 - -1.1 243,821 - +1.5 243,852 - -0.4 243,903 + EX31_RS18360 0.15 +0.0 243,903 + EX31_RS18360 0.15 +0.5 243,903 + EX31_RS18360 0.15 +0.9 243,903 + EX31_RS18360 0.15 +0.5 243,903 + EX31_RS18360 0.15 +0.8 243,903 + EX31_RS18360 0.15 +0.6 243,903 + EX31_RS18360 0.15 -1.0 243,903 + EX31_RS18360 0.15 +0.9 243,903 + EX31_RS18360 0.15 -0.6 243,903 + EX31_RS18360 0.15 +0.3 243,903 + EX31_RS18360 0.15 -0.2 243,903 + EX31_RS18360 0.15 +0.5 243,904 - EX31_RS18360 0.16 +0.7 243,904 - EX31_RS18360 0.16 -0.6 243,904 - EX31_RS18360 0.16 -1.1 243,904 - EX31_RS18360 0.16 -0.5 243,960 + EX31_RS18360 0.27 +0.4 243,976 + EX31_RS18360 0.30 +0.5 244,026 + EX31_RS18360 0.40 +1.5 244,027 - EX31_RS18360 0.40 -0.8 244,027 - EX31_RS18360 0.40 +1.5 244,027 - EX31_RS18360 0.40 -0.5 244,027 - EX31_RS18360 0.40 +0.3 244,027 - EX31_RS18360 0.40 -0.0 244,061 - EX31_RS18360 0.46 -0.1 244,061 - EX31_RS18360 0.46 -0.4 244,123 + EX31_RS18360 0.59 -1.0 244,123 + EX31_RS18360 0.59 -0.3 244,375 + EX31_RS18365 0.28 +0.5 244,515 + -0.9 244,516 - +1.8 244,539 - -1.0 244,644 - EX31_RS18370 0.56 -1.9 244,677 + EX31_RS18370 0.73 -0.7 244,677 + EX31_RS18370 0.73 -0.2 244,678 - EX31_RS18370 0.73 -0.3 244,810 + EX31_RS18375 0.16 -0.0 244,810 + EX31_RS18375 0.16 -1.2 244,862 + EX31_RS18375 0.26 +1.7 244,862 + EX31_RS18375 0.26 +0.2 244,863 - EX31_RS18375 0.26 +0.5 244,863 - EX31_RS18375 0.26 +0.4 244,863 - EX31_RS18375 0.26 +1.2 244,881 - EX31_RS18375 0.30 -0.1 244,980 + EX31_RS18375 0.50 -0.5 245,015 + EX31_RS18375 0.57 +0.5 245,015 + EX31_RS18375 0.57 -0.4 245,015 + EX31_RS18375 0.57 -0.4 245,016 - EX31_RS18375 0.57 -0.5 245,016 - EX31_RS18375 0.57 +0.4 245,049 + EX31_RS18375 0.64 +0.3 245,049 + EX31_RS18375 0.64 +0.5 245,049 + EX31_RS18375 0.64 +0.2 245,050 - EX31_RS18375 0.64 -1.5 245,080 + EX31_RS18375 0.70 -1.3 245,080 + EX31_RS18375 0.70 +0.3 245,080 + EX31_RS18375 0.70 -0.7 245,080 + EX31_RS18375 0.70 -0.6 245,081 - EX31_RS18375 0.71 +0.0 245,081 - EX31_RS18375 0.71 -0.2 245,097 + EX31_RS18375 0.74 +0.7 245,098 - EX31_RS18375 0.74 +0.1 245,142 + EX31_RS18375 0.83 -1.1 245,142 + EX31_RS18375 0.83 -0.7 245,143 - EX31_RS18375 0.83 -0.8 245,185 + -0.0 245,221 - +0.9 245,241 + -0.1 245,241 + -0.4 245,241 + +1.5 245,242 - +0.8 245,242 - -0.0 245,242 - +0.7 245,324 - +0.2 245,375 + -0.1 245,375 + +0.3 245,376 - -0.2 245,376 - +0.9 245,451 + EX31_RS18380 0.17 -0.3 245,452 - EX31_RS18380 0.17 +0.3 245,452 - EX31_RS18380 0.17 -0.2 245,452 - EX31_RS18380 0.17 -0.7 245,452 - EX31_RS18380 0.17 +0.6 245,452 - EX31_RS18380 0.17 +0.8 245,452 - EX31_RS18380 0.17 +1.1 245,452 - EX31_RS18380 0.17 -0.3 245,452 - EX31_RS18380 0.17 +1.3 245,452 - EX31_RS18380 0.17 +1.0 245,452 - EX31_RS18380 0.17 -0.1 245,499 + EX31_RS18380 0.24 +0.4 245,499 + EX31_RS18380 0.24 +0.9 245,499 + EX31_RS18380 0.24 +1.4 245,507 + EX31_RS18380 0.25 +0.2 245,507 + EX31_RS18380 0.25 +0.6 245,553 - EX31_RS18380 0.31 +0.7 245,606 + EX31_RS18380 0.38 +0.3 245,622 + EX31_RS18380 0.40 +0.4 245,622 + EX31_RS18380 0.40 +0.6 245,622 + EX31_RS18380 0.40 -0.4 245,622 + EX31_RS18380 0.40 -1.2 245,695 - EX31_RS18380 0.50 +0.5 245,695 - EX31_RS18380 0.50 +1.0 245,698 + EX31_RS18380 0.50 -0.7 245,699 - EX31_RS18380 0.50 +0.7 245,699 - EX31_RS18380 0.50 +1.2 245,699 - EX31_RS18380 0.50 -0.6
Or see this region's nucleotide sequence