Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17485 and EX31_RS17490 are separated by 46 nucleotides EX31_RS17490 and EX31_RS17495 are separated by 10 nucleotides EX31_RS17495 and EX31_RS17500 are separated by 83 nucleotides
EX31_RS17485: EX31_RS17485 - ABC transporter substrate-binding protein, at 49,210 to 50,028
_RS17485
EX31_RS17490: EX31_RS17490 - amino acid ABC transporter permease, at 50,075 to 50,788
_RS17490
EX31_RS17495: EX31_RS17495 - amino acid ABC transporter ATP-binding protein, at 50,799 to 51,542
_RS17495
EX31_RS17500: EX31_RS17500 - M20 family metallopeptidase, at 51,626 to 52,789
_RS17500
Position (kb) 50
51 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.118 kb on + strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.119 kb on - strand at 49.314 kb on + strand, within EX31_RS17485 at 49.315 kb on - strand, within EX31_RS17485 at 49.330 kb on + strand, within EX31_RS17485 at 49.331 kb on - strand, within EX31_RS17485 at 49.331 kb on - strand, within EX31_RS17485 at 49.366 kb on - strand, within EX31_RS17485 at 49.519 kb on + strand, within EX31_RS17485 at 49.519 kb on + strand, within EX31_RS17485 at 49.519 kb on + strand, within EX31_RS17485 at 49.519 kb on + strand, within EX31_RS17485 at 49.519 kb on + strand, within EX31_RS17485 at 49.520 kb on - strand, within EX31_RS17485 at 49.520 kb on - strand, within EX31_RS17485 at 49.520 kb on - strand, within EX31_RS17485 at 49.520 kb on - strand, within EX31_RS17485 at 49.520 kb on - strand, within EX31_RS17485 at 49.520 kb on - strand, within EX31_RS17485 at 49.909 kb on - strand, within EX31_RS17485 at 49.975 kb on + strand at 50.040 kb on + strand at 50.040 kb on + strand at 50.040 kb on + strand at 50.040 kb on + strand at 50.041 kb on - strand at 50.041 kb on - strand at 50.041 kb on - strand at 50.045 kb on - strand at 50.099 kb on + strand at 50.099 kb on + strand at 50.133 kb on + strand at 50.246 kb on + strand, within EX31_RS17490 at 50.247 kb on - strand, within EX31_RS17490 at 50.247 kb on - strand, within EX31_RS17490 at 50.288 kb on - strand, within EX31_RS17490 at 50.364 kb on + strand, within EX31_RS17490 at 50.364 kb on + strand, within EX31_RS17490 at 50.365 kb on - strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.378 kb on + strand, within EX31_RS17490 at 50.379 kb on - strand, within EX31_RS17490 at 50.379 kb on - strand, within EX31_RS17490 at 50.379 kb on - strand, within EX31_RS17490 at 50.380 kb on + strand, within EX31_RS17490 at 50.380 kb on + strand, within EX31_RS17490 at 50.381 kb on - strand, within EX31_RS17490 at 50.381 kb on - strand, within EX31_RS17490 at 50.394 kb on + strand, within EX31_RS17490 at 50.416 kb on - strand, within EX31_RS17490 at 50.627 kb on + strand, within EX31_RS17490 at 50.657 kb on + strand, within EX31_RS17490 at 50.657 kb on + strand, within EX31_RS17490 at 50.658 kb on - strand, within EX31_RS17490 at 50.679 kb on + strand, within EX31_RS17490 at 50.867 kb on + strand at 51.036 kb on - strand, within EX31_RS17495 at 51.040 kb on + strand, within EX31_RS17495 at 51.062 kb on - strand, within EX31_RS17495 at 51.072 kb on + strand, within EX31_RS17495 at 51.072 kb on + strand, within EX31_RS17495 at 51.073 kb on - strand, within EX31_RS17495 at 51.073 kb on - strand, within EX31_RS17495 at 51.286 kb on + strand, within EX31_RS17495 at 51.286 kb on + strand, within EX31_RS17495 at 51.287 kb on - strand, within EX31_RS17495 at 51.287 kb on - strand, within EX31_RS17495 at 51.287 kb on - strand, within EX31_RS17495 at 51.287 kb on - strand, within EX31_RS17495 at 51.287 kb on - strand, within EX31_RS17495 at 51.287 kb on - strand, within EX31_RS17495 at 51.523 kb on + strand at 51.523 kb on + strand at 51.523 kb on + strand at 51.524 kb on - strand at 51.535 kb on + strand at 51.536 kb on - strand at 51.568 kb on + strand at 51.569 kb on - strand at 51.569 kb on - strand at 51.569 kb on - strand at 51.569 kb on - strand at 51.569 kb on - strand at 51.569 kb on - strand at 51.569 kb on - strand at 51.646 kb on + strand at 51.733 kb on + strand at 51.734 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 49,118 + +0.2 49,118 + +0.2 49,118 + -0.1 49,118 + +0.1 49,118 + -0.2 49,118 + -1.2 49,118 + -0.9 49,118 + -0.8 49,118 + -0.5 49,118 + +0.6 49,118 + -1.0 49,118 + +2.0 49,118 + -0.2 49,118 + -0.4 49,118 + -0.7 49,118 + +0.2 49,118 + -0.6 49,118 + -0.0 49,118 + -0.7 49,118 + -0.2 49,118 + +1.2 49,119 - -0.1 49,119 - -0.9 49,119 - +1.2 49,119 - -0.7 49,119 - +1.0 49,119 - -0.7 49,119 - +0.4 49,119 - +0.5 49,119 - -0.6 49,119 - -0.5 49,119 - -0.6 49,119 - -0.2 49,119 - -0.6 49,119 - +0.9 49,119 - -0.4 49,119 - -0.6 49,119 - -2.5 49,119 - -1.0 49,119 - -0.4 49,119 - +0.2 49,119 - -0.3 49,119 - -0.7 49,119 - +1.0 49,119 - -0.0 49,119 - -0.8 49,119 - +0.5 49,119 - -1.0 49,119 - -1.9 49,119 - -1.1 49,119 - +0.2 49,119 - +0.7 49,119 - +0.9 49,119 - -0.1 49,119 - -0.2 49,314 + EX31_RS17485 0.13 -0.3 49,315 - EX31_RS17485 0.13 -0.0 49,330 + EX31_RS17485 0.15 -0.2 49,331 - EX31_RS17485 0.15 -0.6 49,331 - EX31_RS17485 0.15 -0.9 49,366 - EX31_RS17485 0.19 -0.6 49,519 + EX31_RS17485 0.38 +0.2 49,519 + EX31_RS17485 0.38 +0.8 49,519 + EX31_RS17485 0.38 -0.4 49,519 + EX31_RS17485 0.38 -1.7 49,519 + EX31_RS17485 0.38 -0.4 49,520 - EX31_RS17485 0.38 -0.5 49,520 - EX31_RS17485 0.38 -0.7 49,520 - EX31_RS17485 0.38 -0.5 49,520 - EX31_RS17485 0.38 -0.7 49,520 - EX31_RS17485 0.38 -0.8 49,520 - EX31_RS17485 0.38 -0.5 49,909 - EX31_RS17485 0.85 -0.2 49,975 + -0.3 50,040 + +0.8 50,040 + -2.8 50,040 + +0.2 50,040 + -1.3 50,041 - -0.6 50,041 - +0.2 50,041 - +0.2 50,045 - +1.0 50,099 + +1.2 50,099 + +0.5 50,133 + +0.0 50,246 + EX31_RS17490 0.24 -1.5 50,247 - EX31_RS17490 0.24 -2.2 50,247 - EX31_RS17490 0.24 -0.6 50,288 - EX31_RS17490 0.30 +0.5 50,364 + EX31_RS17490 0.40 +0.1 50,364 + EX31_RS17490 0.40 -1.2 50,365 - EX31_RS17490 0.41 -3.2 50,378 + EX31_RS17490 0.42 +0.4 50,378 + EX31_RS17490 0.42 +0.7 50,378 + EX31_RS17490 0.42 -0.1 50,378 + EX31_RS17490 0.42 -0.9 50,378 + EX31_RS17490 0.42 +0.8 50,378 + EX31_RS17490 0.42 -0.6 50,378 + EX31_RS17490 0.42 -0.4 50,378 + EX31_RS17490 0.42 -0.2 50,378 + EX31_RS17490 0.42 +0.3 50,379 - EX31_RS17490 0.43 -0.2 50,379 - EX31_RS17490 0.43 -0.7 50,379 - EX31_RS17490 0.43 -0.5 50,380 + EX31_RS17490 0.43 -0.4 50,380 + EX31_RS17490 0.43 +0.5 50,381 - EX31_RS17490 0.43 -1.1 50,381 - EX31_RS17490 0.43 -0.3 50,394 + EX31_RS17490 0.45 +0.4 50,416 - EX31_RS17490 0.48 -1.2 50,627 + EX31_RS17490 0.77 -1.3 50,657 + EX31_RS17490 0.82 -1.3 50,657 + EX31_RS17490 0.82 -0.3 50,658 - EX31_RS17490 0.82 -0.4 50,679 + EX31_RS17490 0.85 +0.2 50,867 + -0.6 51,036 - EX31_RS17495 0.32 -0.7 51,040 + EX31_RS17495 0.32 -0.4 51,062 - EX31_RS17495 0.35 -0.8 51,072 + EX31_RS17495 0.37 -0.8 51,072 + EX31_RS17495 0.37 +0.1 51,073 - EX31_RS17495 0.37 -0.1 51,073 - EX31_RS17495 0.37 -0.5 51,286 + EX31_RS17495 0.65 +0.3 51,286 + EX31_RS17495 0.65 +0.9 51,287 - EX31_RS17495 0.66 -0.1 51,287 - EX31_RS17495 0.66 -0.2 51,287 - EX31_RS17495 0.66 +0.7 51,287 - EX31_RS17495 0.66 +0.6 51,287 - EX31_RS17495 0.66 -0.1 51,287 - EX31_RS17495 0.66 +0.8 51,523 + +1.4 51,523 + -1.9 51,523 + -0.5 51,524 - +1.1 51,535 + +0.4 51,536 - -1.3 51,568 + +0.2 51,569 - +1.0 51,569 - -0.6 51,569 - +1.0 51,569 - +0.8 51,569 - -0.6 51,569 - +0.5 51,569 - -0.7 51,646 + -0.3 51,733 + +0.9 51,734 - -1.7
Or see this region's nucleotide sequence