Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17445 and EX31_RS17450 are separated by 367 nucleotides EX31_RS17450 and EX31_RS17455 are separated by 286 nucleotides
EX31_RS17445: EX31_RS17445 - PLP-dependent aminotransferase family protein, at 40,391 to 41,824
_RS17445
EX31_RS17450: EX31_RS17450 - ATP-independent periplasmic protein-refolding chaperone, at 42,192 to 42,701
_RS17450
EX31_RS17455: EX31_RS17455 - carbon starvation protein A, at 42,988 to 45,054
_RS17455
Position (kb) 42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 41.204 kb on + strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.205 kb on - strand, within EX31_RS17445 at 41.256 kb on - strand, within EX31_RS17445 at 41.256 kb on - strand, within EX31_RS17445 at 41.256 kb on - strand, within EX31_RS17445 at 41.299 kb on + strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.300 kb on - strand, within EX31_RS17445 at 41.329 kb on + strand, within EX31_RS17445 at 41.330 kb on - strand, within EX31_RS17445 at 41.344 kb on - strand, within EX31_RS17445 at 41.577 kb on + strand, within EX31_RS17445 at 41.578 kb on - strand, within EX31_RS17445 at 41.609 kb on + strand, within EX31_RS17445 at 41.609 kb on + strand, within EX31_RS17445 at 41.610 kb on - strand, within EX31_RS17445 at 41.610 kb on - strand, within EX31_RS17445 at 41.626 kb on - strand, within EX31_RS17445 at 41.679 kb on + strand, within EX31_RS17445 at 41.679 kb on + strand, within EX31_RS17445 at 41.680 kb on - strand, within EX31_RS17445 at 41.726 kb on - strand at 41.726 kb on - strand at 41.726 kb on - strand at 41.733 kb on - strand at 41.733 kb on - strand at 41.733 kb on - strand at 41.824 kb on + strand at 41.825 kb on - strand at 41.869 kb on - strand at 41.869 kb on - strand at 41.901 kb on - strand at 41.901 kb on - strand at 41.940 kb on + strand at 41.964 kb on + strand at 41.966 kb on - strand at 41.966 kb on - strand at 41.986 kb on + strand at 42.042 kb on - strand at 42.042 kb on - strand at 42.095 kb on - strand at 42.110 kb on + strand at 42.113 kb on + strand at 42.113 kb on + strand at 42.114 kb on - strand at 42.114 kb on - strand at 42.191 kb on + strand at 42.192 kb on - strand at 42.192 kb on - strand at 42.197 kb on + strand at 42.327 kb on - strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.341 kb on + strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.342 kb on - strand, within EX31_RS17450 at 42.518 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.545 kb on + strand, within EX31_RS17450 at 42.579 kb on + strand, within EX31_RS17450 at 42.579 kb on + strand, within EX31_RS17450 at 42.580 kb on - strand, within EX31_RS17450 at 42.580 kb on - strand, within EX31_RS17450 at 42.699 kb on + strand at 42.754 kb on - strand at 42.831 kb on + strand at 42.840 kb on - strand at 42.852 kb on - strand at 42.861 kb on - strand at 42.873 kb on + strand at 42.914 kb on + strand at 42.915 kb on - strand at 42.915 kb on - strand at 42.922 kb on + strand at 42.922 kb on + strand at 42.922 kb on + strand at 42.922 kb on + strand at 42.923 kb on - strand at 42.923 kb on - strand at 42.923 kb on - strand at 42.936 kb on + strand at 42.936 kb on + strand at 42.937 kb on - strand at 42.937 kb on - strand at 42.937 kb on - strand at 42.940 kb on + strand at 42.940 kb on + strand at 42.972 kb on + strand at 42.972 kb on + strand at 42.982 kb on + strand at 42.982 kb on + strand at 42.983 kb on - strand at 42.983 kb on - strand at 42.983 kb on - strand at 42.983 kb on - strand at 42.983 kb on - strand at 43.121 kb on - strand at 43.141 kb on + strand at 43.142 kb on - strand at 43.225 kb on + strand, within EX31_RS17455 at 43.225 kb on + strand, within EX31_RS17455 at 43.226 kb on - strand, within EX31_RS17455 at 43.503 kb on + strand, within EX31_RS17455 at 43.503 kb on + strand, within EX31_RS17455 at 43.503 kb on + strand, within EX31_RS17455 at 43.504 kb on - strand, within EX31_RS17455 at 43.602 kb on + strand, within EX31_RS17455 at 43.602 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.612 kb on + strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.613 kb on - strand, within EX31_RS17455 at 43.614 kb on + strand, within EX31_RS17455 at 43.614 kb on + strand, within EX31_RS17455 at 43.615 kb on - strand, within EX31_RS17455
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 41,204 + EX31_RS17445 0.57 +0.6 41,205 - EX31_RS17445 0.57 +0.3 41,205 - EX31_RS17445 0.57 -0.7 41,205 - EX31_RS17445 0.57 +0.0 41,205 - EX31_RS17445 0.57 +0.3 41,256 - EX31_RS17445 0.60 +1.1 41,256 - EX31_RS17445 0.60 +0.9 41,256 - EX31_RS17445 0.60 +0.6 41,299 + EX31_RS17445 0.63 -0.2 41,300 - EX31_RS17445 0.63 -0.4 41,300 - EX31_RS17445 0.63 +1.1 41,300 - EX31_RS17445 0.63 -0.5 41,300 - EX31_RS17445 0.63 -0.2 41,300 - EX31_RS17445 0.63 -0.3 41,329 + EX31_RS17445 0.65 -0.9 41,330 - EX31_RS17445 0.65 +0.5 41,344 - EX31_RS17445 0.66 +0.7 41,577 + EX31_RS17445 0.83 +0.5 41,578 - EX31_RS17445 0.83 -0.2 41,609 + EX31_RS17445 0.85 +0.5 41,609 + EX31_RS17445 0.85 -1.0 41,610 - EX31_RS17445 0.85 -2.0 41,610 - EX31_RS17445 0.85 +0.4 41,626 - EX31_RS17445 0.86 +0.1 41,679 + EX31_RS17445 0.90 -0.2 41,679 + EX31_RS17445 0.90 -1.0 41,680 - EX31_RS17445 0.90 +0.1 41,726 - -0.4 41,726 - +0.1 41,726 - -0.1 41,733 - -0.1 41,733 - +0.0 41,733 - +0.7 41,824 + +1.4 41,825 - +0.0 41,869 - -1.4 41,869 - +0.0 41,901 - -0.1 41,901 - +0.1 41,940 + +1.6 41,964 + -0.3 41,966 - -0.6 41,966 - -0.1 41,986 + +1.0 42,042 - +0.5 42,042 - -0.4 42,095 - +0.7 42,110 + -0.4 42,113 + -1.7 42,113 + -0.0 42,114 - +0.1 42,114 - +0.0 42,191 + +2.1 42,192 - -0.3 42,192 - -1.4 42,197 + +1.4 42,327 - EX31_RS17450 0.26 -2.1 42,341 + EX31_RS17450 0.29 -1.3 42,341 + EX31_RS17450 0.29 +0.1 42,341 + EX31_RS17450 0.29 -0.7 42,341 + EX31_RS17450 0.29 -0.5 42,341 + EX31_RS17450 0.29 -0.4 42,341 + EX31_RS17450 0.29 -0.6 42,341 + EX31_RS17450 0.29 -0.2 42,342 - EX31_RS17450 0.29 -0.8 42,342 - EX31_RS17450 0.29 -0.5 42,342 - EX31_RS17450 0.29 +0.5 42,342 - EX31_RS17450 0.29 -0.8 42,342 - EX31_RS17450 0.29 +0.4 42,342 - EX31_RS17450 0.29 -0.7 42,342 - EX31_RS17450 0.29 +0.6 42,342 - EX31_RS17450 0.29 -0.1 42,518 + EX31_RS17450 0.64 -0.8 42,545 + EX31_RS17450 0.69 -1.4 42,545 + EX31_RS17450 0.69 +0.2 42,545 + EX31_RS17450 0.69 +0.2 42,545 + EX31_RS17450 0.69 -0.1 42,579 + EX31_RS17450 0.76 +0.7 42,579 + EX31_RS17450 0.76 -1.5 42,580 - EX31_RS17450 0.76 -1.6 42,580 - EX31_RS17450 0.76 -0.5 42,699 + -0.1 42,754 - +0.4 42,831 + +1.0 42,840 - +0.6 42,852 - -0.4 42,861 - -0.1 42,873 + +0.0 42,914 + -1.1 42,915 - +1.1 42,915 - +0.6 42,922 + +0.3 42,922 + -0.7 42,922 + -0.0 42,922 + -0.3 42,923 - -0.9 42,923 - -0.1 42,923 - +0.2 42,936 + +2.1 42,936 + +0.2 42,937 - -0.8 42,937 - -0.2 42,937 - +0.1 42,940 + -0.4 42,940 + -0.2 42,972 + +0.7 42,972 + +0.2 42,982 + -0.6 42,982 + +0.3 42,983 - -0.1 42,983 - -0.8 42,983 - -0.3 42,983 - -0.3 42,983 - +0.7 43,121 - -0.0 43,141 + -0.4 43,142 - -0.3 43,225 + EX31_RS17455 0.11 +0.5 43,225 + EX31_RS17455 0.11 -0.1 43,226 - EX31_RS17455 0.12 -0.7 43,503 + EX31_RS17455 0.25 +0.5 43,503 + EX31_RS17455 0.25 -0.2 43,503 + EX31_RS17455 0.25 -1.5 43,504 - EX31_RS17455 0.25 -0.7 43,602 + EX31_RS17455 0.30 -0.2 43,602 + EX31_RS17455 0.30 -0.2 43,612 + EX31_RS17455 0.30 +1.2 43,612 + EX31_RS17455 0.30 -0.3 43,612 + EX31_RS17455 0.30 +0.5 43,612 + EX31_RS17455 0.30 -2.2 43,612 + EX31_RS17455 0.30 -0.1 43,612 + EX31_RS17455 0.30 -0.0 43,612 + EX31_RS17455 0.30 -1.2 43,612 + EX31_RS17455 0.30 -0.7 43,612 + EX31_RS17455 0.30 -0.4 43,612 + EX31_RS17455 0.30 +0.2 43,612 + EX31_RS17455 0.30 -0.5 43,612 + EX31_RS17455 0.30 -0.3 43,612 + EX31_RS17455 0.30 -1.2 43,612 + EX31_RS17455 0.30 -0.2 43,612 + EX31_RS17455 0.30 -0.6 43,612 + EX31_RS17455 0.30 -0.9 43,612 + EX31_RS17455 0.30 -0.6 43,612 + EX31_RS17455 0.30 +0.3 43,612 + EX31_RS17455 0.30 +0.3 43,612 + EX31_RS17455 0.30 +0.5 43,613 - EX31_RS17455 0.30 -1.7 43,613 - EX31_RS17455 0.30 -3.0 43,613 - EX31_RS17455 0.30 +0.1 43,613 - EX31_RS17455 0.30 +1.6 43,613 - EX31_RS17455 0.30 +0.1 43,613 - EX31_RS17455 0.30 -0.2 43,613 - EX31_RS17455 0.30 +0.3 43,613 - EX31_RS17455 0.30 -0.5 43,613 - EX31_RS17455 0.30 -0.1 43,613 - EX31_RS17455 0.30 -0.5 43,613 - EX31_RS17455 0.30 +0.9 43,613 - EX31_RS17455 0.30 -0.5 43,613 - EX31_RS17455 0.30 +0.3 43,613 - EX31_RS17455 0.30 -0.7 43,614 + EX31_RS17455 0.30 -1.2 43,614 + EX31_RS17455 0.30 +0.4 43,615 - EX31_RS17455 0.30 +0.5
Or see this region's nucleotide sequence