Strain Fitness in Rahnella sp. WP5 around EX31_RS16625

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16620 and EX31_RS16625 are separated by 192 nucleotidesEX31_RS16625 and EX31_RS16630 are separated by 27 nucleotides EX31_RS16620: EX31_RS16620 - glycosyltransferase, at 6,098 to 7,258 _RS16620 EX31_RS16625: EX31_RS16625 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 7,451 to 8,089 _RS16625 EX31_RS16630: EX31_RS16630 - phosphogluconate dehydratase, at 8,117 to 9,931 _RS16630 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1at 6.688 kb on - strand, within EX31_RS16620at 6.688 kb on - strand, within EX31_RS16620at 6.803 kb on - strand, within EX31_RS16620at 6.803 kb on - strand, within EX31_RS16620at 6.822 kb on + strand, within EX31_RS16620at 6.895 kb on + strand, within EX31_RS16620at 7.094 kb on - strand, within EX31_RS16620at 7.095 kb on + strand, within EX31_RS16620at 7.217 kb on + strandat 7.281 kb on + strandat 7.328 kb on - strandat 7.328 kb on - strandat 7.328 kb on - strandat 7.328 kb on - strandat 7.337 kb on - strandat 7.337 kb on - strandat 7.408 kb on - strandat 7.429 kb on + strandat 7.432 kb on + strandat 7.452 kb on + strandat 7.489 kb on + strandat 7.490 kb on - strandat 7.493 kb on - strandat 7.493 kb on - strandat 7.576 kb on - strand, within EX31_RS16625at 8.126 kb on - strandat 8.438 kb on + strand, within EX31_RS16630at 8.438 kb on + strand, within EX31_RS16630at 8.465 kb on - strand, within EX31_RS16630at 8.465 kb on - strand, within EX31_RS16630at 8.831 kb on + strand, within EX31_RS16630at 8.832 kb on - strand, within EX31_RS16630at 8.832 kb on - strand, within EX31_RS16630at 8.832 kb on - strand, within EX31_RS16630at 8.900 kb on - strand, within EX31_RS16630at 8.924 kb on - strand, within EX31_RS16630at 8.924 kb on - strand, within EX31_RS16630

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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6,688 - EX31_RS16620 0.51 -1.2
6,688 - EX31_RS16620 0.51 -2.2
6,803 - EX31_RS16620 0.61 -0.7
6,803 - EX31_RS16620 0.61 +0.2
6,822 + EX31_RS16620 0.62 -0.4
6,895 + EX31_RS16620 0.69 +1.5
7,094 - EX31_RS16620 0.86 +0.0
7,095 + EX31_RS16620 0.86 -0.8
7,217 + -0.3
7,281 + -2.1
7,328 - -0.1
7,328 - +0.4
7,328 - -0.2
7,328 - +0.3
7,337 - +0.4
7,337 - +0.6
7,408 - +0.4
7,429 + -0.6
7,432 + +0.2
7,452 + +0.3
7,489 + +0.2
7,490 - -1.6
7,493 - +0.8
7,493 - -0.6
7,576 - EX31_RS16625 0.20 -0.6
8,126 - -1.2
8,438 + EX31_RS16630 0.18 +0.3
8,438 + EX31_RS16630 0.18 +0.9
8,465 - EX31_RS16630 0.19 +0.2
8,465 - EX31_RS16630 0.19 +0.1
8,831 + EX31_RS16630 0.39 -1.6
8,832 - EX31_RS16630 0.39 +0.8
8,832 - EX31_RS16630 0.39 +0.6
8,832 - EX31_RS16630 0.39 -1.2
8,900 - EX31_RS16630 0.43 -0.9
8,924 - EX31_RS16630 0.44 +0.7
8,924 - EX31_RS16630 0.44 +0.2

Or see this region's nucleotide sequence