Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16610 and EX31_RS16615 overlap by 4 nucleotides EX31_RS16615 and EX31_RS16620 are separated by 7 nucleotides EX31_RS16620 and EX31_RS16625 are separated by 192 nucleotides EX31_RS16625 and EX31_RS16630 are separated by 27 nucleotides
EX31_RS16610: EX31_RS16610 - glycosyltransferase family 2 protein, at 4,847 to 5,524
_RS16610
EX31_RS16615: EX31_RS16615 - membrane protein, at 5,521 to 6,090
_RS16615
EX31_RS16620: EX31_RS16620 - glycosyltransferase, at 6,098 to 7,258
_RS16620
EX31_RS16625: EX31_RS16625 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 7,451 to 8,089
_RS16625
EX31_RS16630: EX31_RS16630 - phosphogluconate dehydratase, at 8,117 to 9,931
_RS16630
Position (kb) 6
7
8 Strain fitness (log2 ratio) -2
-1
0
1 at 5.108 kb on + strand, within EX31_RS16610 at 5.108 kb on + strand, within EX31_RS16610 at 5.140 kb on + strand, within EX31_RS16610 at 5.141 kb on - strand, within EX31_RS16610 at 5.141 kb on - strand, within EX31_RS16610 at 5.241 kb on - strand, within EX31_RS16610 at 5.242 kb on + strand, within EX31_RS16610 at 5.242 kb on + strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.243 kb on - strand, within EX31_RS16610 at 5.328 kb on + strand, within EX31_RS16610 at 5.421 kb on - strand, within EX31_RS16610 at 5.544 kb on + strand at 5.544 kb on + strand at 5.683 kb on - strand, within EX31_RS16615 at 5.683 kb on - strand, within EX31_RS16615 at 5.684 kb on + strand, within EX31_RS16615 at 5.685 kb on - strand, within EX31_RS16615 at 5.908 kb on - strand, within EX31_RS16615 at 6.090 kb on + strand at 6.090 kb on + strand at 6.090 kb on + strand at 6.090 kb on + strand at 6.091 kb on - strand at 6.091 kb on - strand at 6.100 kb on - strand at 6.143 kb on + strand at 6.144 kb on - strand at 6.144 kb on - strand at 6.144 kb on - strand at 6.158 kb on + strand at 6.158 kb on + strand at 6.178 kb on + strand at 6.251 kb on - strand, within EX31_RS16620 at 6.688 kb on - strand, within EX31_RS16620 at 6.688 kb on - strand, within EX31_RS16620 at 6.803 kb on - strand, within EX31_RS16620 at 6.803 kb on - strand, within EX31_RS16620 at 6.822 kb on + strand, within EX31_RS16620 at 6.895 kb on + strand, within EX31_RS16620 at 7.094 kb on - strand, within EX31_RS16620 at 7.095 kb on + strand, within EX31_RS16620 at 7.217 kb on + strand at 7.281 kb on + strand at 7.328 kb on - strand at 7.328 kb on - strand at 7.328 kb on - strand at 7.328 kb on - strand at 7.337 kb on - strand at 7.337 kb on - strand at 7.408 kb on - strand at 7.429 kb on + strand at 7.432 kb on + strand at 7.452 kb on + strand at 7.489 kb on + strand at 7.490 kb on - strand at 7.493 kb on - strand at 7.493 kb on - strand at 7.576 kb on - strand, within EX31_RS16625 at 8.126 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 5,108 + EX31_RS16610 0.38 -0.4 5,108 + EX31_RS16610 0.38 +0.7 5,140 + EX31_RS16610 0.43 -1.5 5,141 - EX31_RS16610 0.43 +1.1 5,141 - EX31_RS16610 0.43 +1.6 5,241 - EX31_RS16610 0.58 -1.0 5,242 + EX31_RS16610 0.58 -0.3 5,242 + EX31_RS16610 0.58 -1.0 5,243 - EX31_RS16610 0.58 -0.7 5,243 - EX31_RS16610 0.58 +0.4 5,243 - EX31_RS16610 0.58 -0.3 5,243 - EX31_RS16610 0.58 +0.6 5,328 + EX31_RS16610 0.71 +0.7 5,421 - EX31_RS16610 0.85 +1.7 5,544 + -0.7 5,544 + +0.6 5,683 - EX31_RS16615 0.28 -0.7 5,683 - EX31_RS16615 0.28 -0.6 5,684 + EX31_RS16615 0.29 -0.4 5,685 - EX31_RS16615 0.29 -0.5 5,908 - EX31_RS16615 0.68 +1.0 6,090 + +0.5 6,090 + +0.3 6,090 + -0.1 6,090 + +0.8 6,091 - +1.3 6,091 - +0.1 6,100 - -0.6 6,143 + -1.7 6,144 - +0.3 6,144 - +0.8 6,144 - +1.0 6,158 + +0.7 6,158 + +0.2 6,178 + -0.5 6,251 - EX31_RS16620 0.13 -0.6 6,688 - EX31_RS16620 0.51 -1.2 6,688 - EX31_RS16620 0.51 -2.2 6,803 - EX31_RS16620 0.61 -0.7 6,803 - EX31_RS16620 0.61 +0.2 6,822 + EX31_RS16620 0.62 -0.4 6,895 + EX31_RS16620 0.69 +1.5 7,094 - EX31_RS16620 0.86 +0.0 7,095 + EX31_RS16620 0.86 -0.8 7,217 + -0.3 7,281 + -2.1 7,328 - -0.1 7,328 - +0.4 7,328 - -0.2 7,328 - +0.3 7,337 - +0.4 7,337 - +0.6 7,408 - +0.4 7,429 + -0.6 7,432 + +0.2 7,452 + +0.3 7,489 + +0.2 7,490 - -1.6 7,493 - +0.8 7,493 - -0.6 7,576 - EX31_RS16625 0.20 -0.6 8,126 - -1.2
Or see this region's nucleotide sequence