Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16380 and EX31_RS16385 overlap by 14 nucleotides
EX31_RS16380: EX31_RS16380 - radical SAM protein, at 25,586 to 26,974
_RS16380
EX31_RS16385: EX31_RS16385 - adenosylmethionine decarboxylase, at 26,961 to 27,383
_RS16385
Position (kb) 26
27
28 Strain fitness (log2 ratio) -2
-1
0
1
2 at 25.967 kb on - strand, within EX31_RS16380 at 25.967 kb on - strand, within EX31_RS16380 at 25.969 kb on + strand, within EX31_RS16380 at 26.035 kb on - strand, within EX31_RS16380 at 26.040 kb on + strand, within EX31_RS16380 at 26.041 kb on - strand, within EX31_RS16380 at 26.043 kb on - strand, within EX31_RS16380 at 26.043 kb on - strand, within EX31_RS16380 at 26.043 kb on - strand, within EX31_RS16380 at 26.065 kb on + strand, within EX31_RS16380 at 26.067 kb on + strand, within EX31_RS16380 at 26.101 kb on + strand, within EX31_RS16380 at 26.112 kb on + strand, within EX31_RS16380 at 26.125 kb on + strand, within EX31_RS16380 at 26.125 kb on + strand, within EX31_RS16380 at 26.125 kb on + strand, within EX31_RS16380 at 26.134 kb on + strand, within EX31_RS16380 at 26.154 kb on + strand, within EX31_RS16380 at 26.171 kb on - strand, within EX31_RS16380 at 26.222 kb on + strand, within EX31_RS16380 at 26.231 kb on - strand, within EX31_RS16380 at 26.231 kb on - strand, within EX31_RS16380 at 26.231 kb on - strand, within EX31_RS16380 at 26.231 kb on - strand, within EX31_RS16380 at 26.263 kb on + strand, within EX31_RS16380 at 26.268 kb on + strand, within EX31_RS16380 at 26.269 kb on - strand, within EX31_RS16380 at 26.272 kb on + strand, within EX31_RS16380 at 26.272 kb on + strand, within EX31_RS16380 at 26.272 kb on + strand, within EX31_RS16380 at 26.272 kb on + strand, within EX31_RS16380 at 26.273 kb on - strand, within EX31_RS16380 at 26.273 kb on - strand, within EX31_RS16380 at 26.276 kb on + strand, within EX31_RS16380 at 26.276 kb on + strand, within EX31_RS16380 at 26.276 kb on + strand, within EX31_RS16380 at 26.276 kb on + strand, within EX31_RS16380 at 26.276 kb on + strand, within EX31_RS16380 at 26.276 kb on + strand, within EX31_RS16380 at 26.277 kb on - strand, within EX31_RS16380 at 26.277 kb on - strand, within EX31_RS16380 at 26.277 kb on - strand, within EX31_RS16380 at 26.284 kb on + strand, within EX31_RS16380 at 26.284 kb on + strand, within EX31_RS16380 at 26.285 kb on - strand, within EX31_RS16380 at 26.352 kb on + strand, within EX31_RS16380 at 26.352 kb on + strand, within EX31_RS16380 at 26.352 kb on + strand, within EX31_RS16380 at 26.352 kb on + strand, within EX31_RS16380 at 26.352 kb on + strand, within EX31_RS16380 at 26.352 kb on + strand, within EX31_RS16380 at 26.353 kb on - strand, within EX31_RS16380 at 26.353 kb on - strand, within EX31_RS16380 at 26.353 kb on - strand, within EX31_RS16380 at 26.353 kb on - strand, within EX31_RS16380 at 26.406 kb on + strand, within EX31_RS16380 at 26.407 kb on - strand, within EX31_RS16380 at 26.411 kb on + strand, within EX31_RS16380 at 26.411 kb on + strand, within EX31_RS16380 at 26.411 kb on + strand, within EX31_RS16380 at 26.411 kb on + strand, within EX31_RS16380 at 26.411 kb on + strand, within EX31_RS16380 at 26.411 kb on + strand, within EX31_RS16380 at 26.441 kb on + strand, within EX31_RS16380 at 26.442 kb on - strand, within EX31_RS16380 at 26.442 kb on - strand, within EX31_RS16380 at 26.594 kb on + strand, within EX31_RS16380 at 26.594 kb on + strand, within EX31_RS16380 at 26.594 kb on + strand, within EX31_RS16380 at 26.595 kb on - strand, within EX31_RS16380 at 26.596 kb on + strand, within EX31_RS16380 at 26.706 kb on - strand, within EX31_RS16380 at 26.706 kb on - strand, within EX31_RS16380 at 26.734 kb on + strand, within EX31_RS16380 at 26.735 kb on - strand, within EX31_RS16380 at 26.736 kb on + strand, within EX31_RS16380 at 26.792 kb on - strand, within EX31_RS16380 at 26.824 kb on - strand, within EX31_RS16380 at 26.842 kb on + strand at 26.862 kb on + strand at 26.863 kb on - strand at 26.951 kb on - strand at 26.951 kb on - strand at 27.038 kb on + strand, within EX31_RS16385 at 27.039 kb on - strand, within EX31_RS16385 at 27.138 kb on + strand, within EX31_RS16385 at 27.151 kb on - strand, within EX31_RS16385 at 27.151 kb on - strand, within EX31_RS16385 at 27.307 kb on - strand, within EX31_RS16385 at 27.341 kb on + strand at 27.351 kb on - strand at 27.355 kb on - strand at 27.436 kb on + strand at 27.579 kb on + strand at 27.584 kb on + strand at 27.585 kb on - strand at 27.585 kb on - strand at 27.585 kb on - strand at 27.585 kb on - strand at 27.634 kb on + strand at 27.634 kb on + strand at 27.634 kb on + strand at 27.634 kb on + strand at 27.643 kb on + strand at 27.644 kb on - strand at 27.644 kb on - strand at 27.654 kb on + strand at 27.655 kb on - strand at 27.677 kb on - strand at 27.753 kb on + strand at 27.807 kb on + strand at 27.811 kb on + strand at 27.811 kb on + strand at 27.812 kb on - strand at 27.816 kb on + strand at 27.820 kb on + strand at 27.820 kb on + strand at 27.820 kb on + strand at 27.821 kb on - strand at 27.906 kb on + strand at 27.906 kb on + strand at 27.906 kb on + strand at 27.906 kb on + strand at 27.906 kb on + strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.907 kb on - strand at 27.913 kb on + strand at 27.936 kb on + strand at 27.936 kb on + strand at 27.936 kb on + strand at 27.937 kb on - strand at 27.937 kb on - strand at 27.937 kb on - strand at 27.937 kb on - strand at 27.948 kb on + strand at 27.948 kb on + strand at 27.980 kb on + strand at 28.045 kb on + strand at 28.045 kb on + strand at 28.045 kb on + strand at 28.045 kb on + strand at 28.045 kb on + strand at 28.045 kb on + strand at 28.046 kb on - strand at 28.049 kb on + strand at 28.049 kb on + strand at 28.050 kb on - strand at 28.059 kb on + strand at 28.059 kb on + strand at 28.059 kb on + strand at 28.059 kb on + strand at 28.060 kb on - strand at 28.060 kb on - strand at 28.060 kb on - strand at 28.060 kb on - strand at 28.072 kb on - strand at 28.090 kb on + strand at 28.090 kb on + strand at 28.090 kb on + strand at 28.090 kb on + strand at 28.091 kb on - strand at 28.091 kb on - strand at 28.091 kb on - strand at 28.091 kb on - strand at 28.101 kb on + strand at 28.147 kb on + strand at 28.150 kb on + strand at 28.151 kb on - strand at 28.151 kb on - strand at 28.151 kb on - strand at 28.163 kb on + strand at 28.163 kb on + strand at 28.164 kb on - strand at 28.164 kb on - strand at 28.190 kb on + strand at 28.190 kb on + strand at 28.191 kb on - strand at 28.240 kb on + strand at 28.342 kb on + strand at 28.342 kb on + strand at 28.342 kb on + strand at 28.343 kb on - strand at 28.343 kb on - strand at 28.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 25,967 - EX31_RS16380 0.27 +1.2 25,967 - EX31_RS16380 0.27 +0.1 25,969 + EX31_RS16380 0.28 +0.4 26,035 - EX31_RS16380 0.32 +0.3 26,040 + EX31_RS16380 0.33 +0.9 26,041 - EX31_RS16380 0.33 -0.0 26,043 - EX31_RS16380 0.33 +0.8 26,043 - EX31_RS16380 0.33 +0.3 26,043 - EX31_RS16380 0.33 +0.2 26,065 + EX31_RS16380 0.34 -0.2 26,067 + EX31_RS16380 0.35 -0.1 26,101 + EX31_RS16380 0.37 -0.2 26,112 + EX31_RS16380 0.38 +0.0 26,125 + EX31_RS16380 0.39 +1.0 26,125 + EX31_RS16380 0.39 +0.9 26,125 + EX31_RS16380 0.39 -1.0 26,134 + EX31_RS16380 0.39 -2.2 26,154 + EX31_RS16380 0.41 -0.6 26,171 - EX31_RS16380 0.42 +0.1 26,222 + EX31_RS16380 0.46 +0.4 26,231 - EX31_RS16380 0.46 -0.8 26,231 - EX31_RS16380 0.46 -1.5 26,231 - EX31_RS16380 0.46 +0.1 26,231 - EX31_RS16380 0.46 -0.4 26,263 + EX31_RS16380 0.49 -0.5 26,268 + EX31_RS16380 0.49 +0.4 26,269 - EX31_RS16380 0.49 +0.6 26,272 + EX31_RS16380 0.49 -0.8 26,272 + EX31_RS16380 0.49 -0.6 26,272 + EX31_RS16380 0.49 +0.1 26,272 + EX31_RS16380 0.49 -2.4 26,273 - EX31_RS16380 0.49 +0.5 26,273 - EX31_RS16380 0.49 +0.5 26,276 + EX31_RS16380 0.50 -0.7 26,276 + EX31_RS16380 0.50 -0.7 26,276 + EX31_RS16380 0.50 +0.1 26,276 + EX31_RS16380 0.50 +0.0 26,276 + EX31_RS16380 0.50 +0.9 26,276 + EX31_RS16380 0.50 -0.3 26,277 - EX31_RS16380 0.50 +0.4 26,277 - EX31_RS16380 0.50 +0.8 26,277 - EX31_RS16380 0.50 -0.7 26,284 + EX31_RS16380 0.50 +0.5 26,284 + EX31_RS16380 0.50 +0.1 26,285 - EX31_RS16380 0.50 +0.8 26,352 + EX31_RS16380 0.55 +1.0 26,352 + EX31_RS16380 0.55 -0.7 26,352 + EX31_RS16380 0.55 +1.0 26,352 + EX31_RS16380 0.55 -0.2 26,352 + EX31_RS16380 0.55 +0.9 26,352 + EX31_RS16380 0.55 +0.5 26,353 - EX31_RS16380 0.55 -0.5 26,353 - EX31_RS16380 0.55 +0.0 26,353 - EX31_RS16380 0.55 -0.2 26,353 - EX31_RS16380 0.55 +0.2 26,406 + EX31_RS16380 0.59 -0.1 26,407 - EX31_RS16380 0.59 +0.0 26,411 + EX31_RS16380 0.59 +1.0 26,411 + EX31_RS16380 0.59 +0.2 26,411 + EX31_RS16380 0.59 +0.3 26,411 + EX31_RS16380 0.59 -2.1 26,411 + EX31_RS16380 0.59 +1.5 26,411 + EX31_RS16380 0.59 +0.5 26,441 + EX31_RS16380 0.62 +1.7 26,442 - EX31_RS16380 0.62 +0.1 26,442 - EX31_RS16380 0.62 +0.6 26,594 + EX31_RS16380 0.73 +0.8 26,594 + EX31_RS16380 0.73 +0.4 26,594 + EX31_RS16380 0.73 -0.7 26,595 - EX31_RS16380 0.73 -1.3 26,596 + EX31_RS16380 0.73 -1.7 26,706 - EX31_RS16380 0.81 -0.5 26,706 - EX31_RS16380 0.81 +0.1 26,734 + EX31_RS16380 0.83 +0.9 26,735 - EX31_RS16380 0.83 +0.7 26,736 + EX31_RS16380 0.83 +0.0 26,792 - EX31_RS16380 0.87 +0.9 26,824 - EX31_RS16380 0.89 +0.2 26,842 + +0.5 26,862 + +1.0 26,863 - -0.7 26,951 - +0.0 26,951 - +0.5 27,038 + EX31_RS16385 0.18 +0.3 27,039 - EX31_RS16385 0.18 -0.4 27,138 + EX31_RS16385 0.42 -2.1 27,151 - EX31_RS16385 0.45 -0.9 27,151 - EX31_RS16385 0.45 -1.9 27,307 - EX31_RS16385 0.82 -0.0 27,341 + -0.3 27,351 - -0.9 27,355 - -0.7 27,436 + -1.1 27,579 + +0.7 27,584 + -0.7 27,585 - -0.5 27,585 - +0.7 27,585 - -0.4 27,585 - -1.1 27,634 + -1.1 27,634 + -0.1 27,634 + +0.9 27,634 + +1.0 27,643 + +0.2 27,644 - +0.0 27,644 - -1.5 27,654 + +0.3 27,655 - +0.7 27,677 - +0.7 27,753 + +0.2 27,807 + -0.5 27,811 + +0.2 27,811 + +0.0 27,812 - -0.4 27,816 + +0.7 27,820 + -1.1 27,820 + +1.1 27,820 + +0.4 27,821 - +0.6 27,906 + -1.5 27,906 + +0.6 27,906 + +0.6 27,906 + -0.2 27,906 + +0.0 27,907 - -0.5 27,907 - +1.5 27,907 - +0.6 27,907 - +0.3 27,907 - -1.1 27,907 - +0.7 27,907 - +0.4 27,913 + -0.7 27,936 + +0.4 27,936 + +0.4 27,936 + -0.5 27,937 - +0.1 27,937 - -0.7 27,937 - -0.1 27,937 - -0.2 27,948 + +0.2 27,948 + -0.1 27,980 + -0.3 28,045 + +0.4 28,045 + -0.4 28,045 + +2.5 28,045 + +1.0 28,045 + -0.1 28,045 + +0.1 28,046 - -0.3 28,049 + +0.7 28,049 + -0.0 28,050 - +0.8 28,059 + -2.0 28,059 + +0.6 28,059 + +0.3 28,059 + -0.3 28,060 - -1.9 28,060 - -0.8 28,060 - +1.1 28,060 - +0.5 28,072 - -0.3 28,090 + +0.2 28,090 + -0.4 28,090 + +0.2 28,090 + -0.0 28,091 - +2.4 28,091 - -0.3 28,091 - +0.2 28,091 - -0.4 28,101 + +0.4 28,147 + -0.1 28,150 + -1.5 28,151 - +0.7 28,151 - +0.3 28,151 - +0.8 28,163 + -0.1 28,163 + -0.1 28,164 - +0.4 28,164 - +1.0 28,190 + +0.9 28,190 + -0.3 28,191 - -0.2 28,240 + +0.3 28,342 + -0.6 28,342 + -1.4 28,342 + +0.0 28,343 - +1.1 28,343 - -1.0 28,347 - -0.5
Or see this region's nucleotide sequence