Strain Fitness in Rahnella sp. WP5 around EX31_RS15685

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15670 and EX31_RS15675 are separated by 84 nucleotidesEX31_RS15675 and EX31_RS15680 overlap by 1 nucleotidesEX31_RS15680 and EX31_RS15685 are separated by 89 nucleotidesEX31_RS15685 and EX31_RS15690 are separated by 232 nucleotides EX31_RS15665: EX31_RS15665 - YcjX family protein, at 32,575 to 33,972 _RS15665 EX31_RS15670: EX31_RS15670 - phage-shock protein, at 33,953 to 34,198 _RS15670 EX31_RS15675: EX31_RS15675 - envelope stress response membrane protein PspC, at 34,283 to 34,642 _RS15675 EX31_RS15680: EX31_RS15680 - envelope stress response membrane protein PspB, at 34,642 to 34,869 _RS15680 EX31_RS15685: EX31_RS15685 - phage shock protein PspA, at 34,959 to 35,630 _RS15685 EX31_RS15690: EX31_RS15690 - phage shock protein operon transcriptional activator, at 35,863 to 36,870 _RS15690 Position (kb) 34 35 36Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 34.013 kb on - strand, within EX31_RS15670at 34.013 kb on - strand, within EX31_RS15670at 34.013 kb on - strand, within EX31_RS15670at 34.034 kb on + strand, within EX31_RS15670at 34.034 kb on + strand, within EX31_RS15670at 34.035 kb on - strand, within EX31_RS15670at 34.035 kb on - strand, within EX31_RS15670at 34.038 kb on - strand, within EX31_RS15670at 34.038 kb on - strand, within EX31_RS15670at 34.043 kb on + strand, within EX31_RS15670at 34.044 kb on - strand, within EX31_RS15670at 34.051 kb on - strand, within EX31_RS15670at 34.051 kb on - strand, within EX31_RS15670at 34.051 kb on - strand, within EX31_RS15670at 34.127 kb on - strand, within EX31_RS15670at 34.198 kb on + strandat 34.284 kb on + strandat 34.285 kb on - strandat 34.285 kb on - strandat 34.332 kb on + strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.333 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.429 kb on - strand, within EX31_RS15675at 34.458 kb on + strand, within EX31_RS15675at 34.471 kb on + strand, within EX31_RS15675at 34.472 kb on - strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.473 kb on + strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.474 kb on - strand, within EX31_RS15675at 34.586 kb on + strand, within EX31_RS15675at 34.587 kb on - strand, within EX31_RS15675at 34.644 kb on - strandat 34.644 kb on - strandat 34.644 kb on - strandat 34.698 kb on + strand, within EX31_RS15680at 34.699 kb on - strand, within EX31_RS15680at 34.699 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.711 kb on - strand, within EX31_RS15680at 34.762 kb on - strand, within EX31_RS15680at 34.793 kb on + strand, within EX31_RS15680at 34.825 kb on + strand, within EX31_RS15680at 34.826 kb on - strand, within EX31_RS15680at 34.826 kb on - strand, within EX31_RS15680at 34.826 kb on - strand, within EX31_RS15680at 34.880 kb on + strandat 34.881 kb on - strandat 34.881 kb on - strandat 34.881 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.890 kb on - strandat 34.893 kb on + strandat 34.894 kb on - strandat 34.960 kb on + strandat 34.961 kb on - strandat 34.961 kb on - strandat 34.961 kb on - strandat 35.100 kb on - strand, within EX31_RS15685at 35.208 kb on + strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.209 kb on - strand, within EX31_RS15685at 35.299 kb on - strand, within EX31_RS15685at 35.720 kb on + strandat 35.721 kb on - strandat 35.722 kb on + strandat 35.755 kb on - strandat 35.796 kb on - strandat 35.950 kb on - strandat 36.013 kb on + strand, within EX31_RS15690at 36.013 kb on + strand, within EX31_RS15690at 36.013 kb on + strand, within EX31_RS15690at 36.014 kb on - strand, within EX31_RS15690at 36.014 kb on - strand, within EX31_RS15690at 36.173 kb on + strand, within EX31_RS15690at 36.173 kb on + strand, within EX31_RS15690at 36.174 kb on - strand, within EX31_RS15690at 36.174 kb on - strand, within EX31_RS15690at 36.238 kb on + strand, within EX31_RS15690at 36.317 kb on + strand, within EX31_RS15690at 36.496 kb on + strand, within EX31_RS15690at 36.496 kb on + strand, within EX31_RS15690at 36.609 kb on + strand, within EX31_RS15690at 36.610 kb on - strand, within EX31_RS15690

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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34,013 - EX31_RS15670 0.24 -0.0
34,013 - EX31_RS15670 0.24 +0.7
34,013 - EX31_RS15670 0.24 -0.0
34,034 + EX31_RS15670 0.33 -2.1
34,034 + EX31_RS15670 0.33 -0.0
34,035 - EX31_RS15670 0.33 +0.2
34,035 - EX31_RS15670 0.33 +0.6
34,038 - EX31_RS15670 0.35 -0.6
34,038 - EX31_RS15670 0.35 -0.3
34,043 + EX31_RS15670 0.37 -0.2
34,044 - EX31_RS15670 0.37 +0.4
34,051 - EX31_RS15670 0.40 -1.3
34,051 - EX31_RS15670 0.40 +0.5
34,051 - EX31_RS15670 0.40 +0.3
34,127 - EX31_RS15670 0.71 +0.9
34,198 + +0.9
34,284 + +1.1
34,285 - +0.8
34,285 - -1.0
34,332 + EX31_RS15675 0.14 +0.5
34,333 - EX31_RS15675 0.14 -2.3
34,333 - EX31_RS15675 0.14 -2.9
34,333 - EX31_RS15675 0.14 +0.6
34,333 - EX31_RS15675 0.14 +0.8
34,333 - EX31_RS15675 0.14 -0.7
34,429 - EX31_RS15675 0.41 +0.5
34,429 - EX31_RS15675 0.41 -0.2
34,429 - EX31_RS15675 0.41 -0.2
34,429 - EX31_RS15675 0.41 +0.5
34,429 - EX31_RS15675 0.41 -0.0
34,429 - EX31_RS15675 0.41 -0.4
34,458 + EX31_RS15675 0.49 -1.8
34,471 + EX31_RS15675 0.52 +1.4
34,472 - EX31_RS15675 0.53 +0.5
34,473 + EX31_RS15675 0.53 +0.7
34,473 + EX31_RS15675 0.53 +0.6
34,473 + EX31_RS15675 0.53 -0.1
34,473 + EX31_RS15675 0.53 +0.1
34,473 + EX31_RS15675 0.53 +0.4
34,473 + EX31_RS15675 0.53 -1.8
34,474 - EX31_RS15675 0.53 +0.3
34,474 - EX31_RS15675 0.53 -0.3
34,474 - EX31_RS15675 0.53 -2.1
34,474 - EX31_RS15675 0.53 +0.3
34,586 + EX31_RS15675 0.84 -1.6
34,587 - EX31_RS15675 0.84 -0.6
34,644 - -0.6
34,644 - +0.5
34,644 - +1.0
34,698 + EX31_RS15680 0.25 +0.6
34,699 - EX31_RS15680 0.25 +0.5
34,699 - EX31_RS15680 0.25 -0.5
34,711 - EX31_RS15680 0.30 -0.7
34,711 - EX31_RS15680 0.30 -0.3
34,711 - EX31_RS15680 0.30 +0.3
34,711 - EX31_RS15680 0.30 -0.4
34,762 - EX31_RS15680 0.53 +1.4
34,793 + EX31_RS15680 0.66 +1.3
34,825 + EX31_RS15680 0.80 +1.8
34,826 - EX31_RS15680 0.81 -1.6
34,826 - EX31_RS15680 0.81 +0.2
34,826 - EX31_RS15680 0.81 -1.1
34,880 + +0.3
34,881 - -0.7
34,881 - +0.6
34,881 - -0.5
34,890 - -0.6
34,890 - -0.0
34,890 - +0.1
34,890 - -0.2
34,890 - -0.6
34,893 + +0.3
34,894 - -0.3
34,960 + +0.8
34,961 - -0.8
34,961 - -0.5
34,961 - -1.3
35,100 - EX31_RS15685 0.21 +0.0
35,208 + EX31_RS15685 0.37 -0.8
35,209 - EX31_RS15685 0.37 +0.1
35,209 - EX31_RS15685 0.37 -1.0
35,209 - EX31_RS15685 0.37 -0.1
35,209 - EX31_RS15685 0.37 -0.3
35,209 - EX31_RS15685 0.37 -0.4
35,299 - EX31_RS15685 0.51 -2.3
35,720 + +0.6
35,721 - +0.6
35,722 + -0.9
35,755 - -0.6
35,796 - -1.3
35,950 - -0.7
36,013 + EX31_RS15690 0.15 +0.9
36,013 + EX31_RS15690 0.15 +0.3
36,013 + EX31_RS15690 0.15 +1.3
36,014 - EX31_RS15690 0.15 +1.2
36,014 - EX31_RS15690 0.15 +0.1
36,173 + EX31_RS15690 0.31 +0.7
36,173 + EX31_RS15690 0.31 -1.0
36,174 - EX31_RS15690 0.31 +1.7
36,174 - EX31_RS15690 0.31 +0.0
36,238 + EX31_RS15690 0.37 -2.0
36,317 + EX31_RS15690 0.45 -0.8
36,496 + EX31_RS15690 0.63 -0.0
36,496 + EX31_RS15690 0.63 +0.7
36,609 + EX31_RS15690 0.74 +0.5
36,610 - EX31_RS15690 0.74 +0.5

Or see this region's nucleotide sequence