Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15555 and EX31_RS15560 are separated by 109 nucleotides EX31_RS15560 and EX31_RS15565 are separated by 237 nucleotides EX31_RS15565 and EX31_RS15570 are separated by 29 nucleotides
EX31_RS15555: EX31_RS15555 - amino acid ABC transporter ATP-binding protein, at 6,706 to 7,443
_RS15555
EX31_RS15560: EX31_RS15560 - hypothetical protein, at 7,553 to 7,906
_RS15560
EX31_RS15565: EX31_RS15565 - NmrA/HSCARG family protein, at 8,144 to 9,013
_RS15565
EX31_RS15570: EX31_RS15570 - NADP-dependent oxidoreductase, at 9,043 to 9,978
_RS15570
Position (kb) 8
9
10 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 7.272 kb on + strand, within EX31_RS15555 at 7.273 kb on - strand, within EX31_RS15555 at 7.338 kb on + strand, within EX31_RS15555 at 7.422 kb on - strand at 7.442 kb on - strand at 7.446 kb on - strand at 7.458 kb on + strand at 7.458 kb on + strand at 7.508 kb on + strand at 7.508 kb on + strand at 7.508 kb on + strand at 7.526 kb on + strand at 7.526 kb on + strand at 7.526 kb on + strand at 7.527 kb on - strand at 7.530 kb on + strand at 7.530 kb on + strand at 7.531 kb on - strand at 7.531 kb on - strand at 7.531 kb on - strand at 7.531 kb on - strand at 7.546 kb on + strand at 7.546 kb on + strand at 7.547 kb on - strand at 7.548 kb on + strand at 7.548 kb on + strand at 7.548 kb on + strand at 7.551 kb on + strand at 7.552 kb on - strand at 7.552 kb on - strand at 7.646 kb on - strand, within EX31_RS15560 at 7.646 kb on - strand, within EX31_RS15560 at 7.651 kb on + strand, within EX31_RS15560 at 7.656 kb on + strand, within EX31_RS15560 at 7.656 kb on + strand, within EX31_RS15560 at 7.656 kb on + strand, within EX31_RS15560 at 7.657 kb on - strand, within EX31_RS15560 at 7.657 kb on - strand, within EX31_RS15560 at 7.685 kb on + strand, within EX31_RS15560 at 7.686 kb on - strand, within EX31_RS15560 at 7.724 kb on + strand, within EX31_RS15560 at 7.725 kb on - strand, within EX31_RS15560 at 7.725 kb on - strand, within EX31_RS15560 at 7.725 kb on - strand, within EX31_RS15560 at 7.725 kb on - strand, within EX31_RS15560 at 7.795 kb on + strand, within EX31_RS15560 at 7.838 kb on - strand, within EX31_RS15560 at 7.865 kb on - strand, within EX31_RS15560 at 7.865 kb on - strand, within EX31_RS15560 at 7.865 kb on - strand, within EX31_RS15560 at 7.866 kb on + strand, within EX31_RS15560 at 7.866 kb on + strand, within EX31_RS15560 at 7.866 kb on + strand, within EX31_RS15560 at 7.867 kb on - strand, within EX31_RS15560 at 7.867 kb on - strand, within EX31_RS15560 at 7.906 kb on + strand at 7.907 kb on - strand at 7.930 kb on - strand at 7.931 kb on + strand at 7.931 kb on + strand at 7.932 kb on - strand at 8.027 kb on - strand at 8.030 kb on + strand at 8.031 kb on - strand at 8.031 kb on - strand at 8.031 kb on - strand at 8.031 kb on - strand at 8.062 kb on + strand at 8.063 kb on - strand at 8.063 kb on - strand at 8.120 kb on + strand at 8.181 kb on + strand at 8.182 kb on - strand at 8.182 kb on - strand at 8.182 kb on - strand at 8.213 kb on + strand at 8.261 kb on - strand, within EX31_RS15565 at 8.286 kb on + strand, within EX31_RS15565 at 8.287 kb on - strand, within EX31_RS15565 at 8.308 kb on - strand, within EX31_RS15565 at 8.308 kb on - strand, within EX31_RS15565 at 8.308 kb on - strand, within EX31_RS15565 at 8.352 kb on + strand, within EX31_RS15565 at 8.357 kb on - strand, within EX31_RS15565 at 8.562 kb on + strand, within EX31_RS15565 at 8.607 kb on + strand, within EX31_RS15565 at 8.608 kb on - strand, within EX31_RS15565 at 8.665 kb on + strand, within EX31_RS15565 at 8.724 kb on + strand, within EX31_RS15565 at 8.922 kb on - strand, within EX31_RS15565 at 8.968 kb on + strand at 9.014 kb on - strand at 9.017 kb on + strand at 9.018 kb on - strand at 9.018 kb on - strand at 9.032 kb on - strand at 9.093 kb on + strand at 9.094 kb on - strand at 9.094 kb on - strand at 9.094 kb on - strand at 9.094 kb on - strand at 9.094 kb on - strand at 9.131 kb on - strand at 9.151 kb on + strand, within EX31_RS15570 at 9.152 kb on - strand, within EX31_RS15570 at 9.152 kb on - strand, within EX31_RS15570 at 9.152 kb on - strand, within EX31_RS15570 at 9.191 kb on - strand, within EX31_RS15570 at 9.208 kb on - strand, within EX31_RS15570 at 9.335 kb on + strand, within EX31_RS15570 at 9.336 kb on - strand, within EX31_RS15570 at 9.352 kb on + strand, within EX31_RS15570 at 9.352 kb on + strand, within EX31_RS15570 at 9.352 kb on + strand, within EX31_RS15570 at 9.352 kb on + strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.353 kb on - strand, within EX31_RS15570 at 9.401 kb on + strand, within EX31_RS15570 at 9.402 kb on - strand, within EX31_RS15570 at 9.402 kb on - strand, within EX31_RS15570 at 9.402 kb on - strand, within EX31_RS15570 at 9.402 kb on - strand, within EX31_RS15570 at 9.495 kb on - strand, within EX31_RS15570 at 9.565 kb on + strand, within EX31_RS15570 at 9.565 kb on + strand, within EX31_RS15570 at 9.566 kb on - strand, within EX31_RS15570 at 9.566 kb on - strand, within EX31_RS15570 at 9.566 kb on - strand, within EX31_RS15570 at 9.811 kb on - strand, within EX31_RS15570 at 9.815 kb on - strand, within EX31_RS15570 at 9.815 kb on - strand, within EX31_RS15570 at 9.815 kb on - strand, within EX31_RS15570 at 9.967 kb on + strand at 9.968 kb on - strand at 9.991 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 7,272 + EX31_RS15555 0.77 +0.2 7,273 - EX31_RS15555 0.77 -0.0 7,338 + EX31_RS15555 0.86 -0.6 7,422 - -0.3 7,442 - -0.3 7,446 - +0.7 7,458 + +0.0 7,458 + +1.6 7,508 + -0.5 7,508 + -0.3 7,508 + -0.2 7,526 + +0.3 7,526 + +0.4 7,526 + -0.0 7,527 - +0.7 7,530 + +0.5 7,530 + +0.1 7,531 - +0.0 7,531 - -1.0 7,531 - -0.5 7,531 - -0.1 7,546 + -1.3 7,546 + +1.0 7,547 - -0.7 7,548 + +0.2 7,548 + -1.4 7,548 + +0.7 7,551 + +0.5 7,552 - -0.6 7,552 - +0.3 7,646 - EX31_RS15560 0.26 +0.2 7,646 - EX31_RS15560 0.26 +0.2 7,651 + EX31_RS15560 0.28 +0.5 7,656 + EX31_RS15560 0.29 +0.6 7,656 + EX31_RS15560 0.29 +1.6 7,656 + EX31_RS15560 0.29 +0.9 7,657 - EX31_RS15560 0.29 +1.0 7,657 - EX31_RS15560 0.29 -1.2 7,685 + EX31_RS15560 0.37 -0.3 7,686 - EX31_RS15560 0.38 -0.3 7,724 + EX31_RS15560 0.48 -0.5 7,725 - EX31_RS15560 0.49 +0.1 7,725 - EX31_RS15560 0.49 -0.7 7,725 - EX31_RS15560 0.49 +0.3 7,725 - EX31_RS15560 0.49 -0.9 7,795 + EX31_RS15560 0.68 -0.9 7,838 - EX31_RS15560 0.81 -0.4 7,865 - EX31_RS15560 0.88 -0.2 7,865 - EX31_RS15560 0.88 +0.1 7,865 - EX31_RS15560 0.88 -0.1 7,866 + EX31_RS15560 0.88 +0.4 7,866 + EX31_RS15560 0.88 +1.5 7,866 + EX31_RS15560 0.88 -0.1 7,867 - EX31_RS15560 0.89 -0.3 7,867 - EX31_RS15560 0.89 -0.5 7,906 + +0.4 7,907 - -1.0 7,930 - +0.1 7,931 + -0.2 7,931 + -0.3 7,932 - -1.8 8,027 - -0.1 8,030 + -0.5 8,031 - +0.9 8,031 - +0.2 8,031 - -0.8 8,031 - +0.4 8,062 + -1.2 8,063 - -2.0 8,063 - +0.7 8,120 + -1.1 8,181 + -1.1 8,182 - +0.8 8,182 - -1.2 8,182 - -1.2 8,213 + -0.3 8,261 - EX31_RS15565 0.13 +0.5 8,286 + EX31_RS15565 0.16 -0.9 8,287 - EX31_RS15565 0.16 -0.2 8,308 - EX31_RS15565 0.19 -0.4 8,308 - EX31_RS15565 0.19 -0.5 8,308 - EX31_RS15565 0.19 -0.0 8,352 + EX31_RS15565 0.24 -0.3 8,357 - EX31_RS15565 0.24 -1.8 8,562 + EX31_RS15565 0.48 -0.5 8,607 + EX31_RS15565 0.53 -0.3 8,608 - EX31_RS15565 0.53 -2.0 8,665 + EX31_RS15565 0.60 -0.6 8,724 + EX31_RS15565 0.67 -0.4 8,922 - EX31_RS15565 0.89 -0.2 8,968 + -0.9 9,014 - +0.2 9,017 + -0.6 9,018 - -2.9 9,018 - +0.1 9,032 - +1.1 9,093 + +0.7 9,094 - +0.7 9,094 - +0.8 9,094 - -0.6 9,094 - +0.1 9,094 - -0.5 9,131 - +0.0 9,151 + EX31_RS15570 0.12 +0.1 9,152 - EX31_RS15570 0.12 +0.8 9,152 - EX31_RS15570 0.12 +1.0 9,152 - EX31_RS15570 0.12 -1.8 9,191 - EX31_RS15570 0.16 +0.3 9,208 - EX31_RS15570 0.18 +0.2 9,335 + EX31_RS15570 0.31 -0.1 9,336 - EX31_RS15570 0.31 +0.0 9,352 + EX31_RS15570 0.33 +0.7 9,352 + EX31_RS15570 0.33 -3.3 9,352 + EX31_RS15570 0.33 +1.3 9,352 + EX31_RS15570 0.33 -0.1 9,353 - EX31_RS15570 0.33 -1.6 9,353 - EX31_RS15570 0.33 -1.3 9,353 - EX31_RS15570 0.33 +0.2 9,353 - EX31_RS15570 0.33 -1.3 9,353 - EX31_RS15570 0.33 +0.3 9,353 - EX31_RS15570 0.33 -0.3 9,353 - EX31_RS15570 0.33 -0.4 9,353 - EX31_RS15570 0.33 +0.9 9,401 + EX31_RS15570 0.38 +0.4 9,402 - EX31_RS15570 0.38 -3.3 9,402 - EX31_RS15570 0.38 +0.9 9,402 - EX31_RS15570 0.38 +0.3 9,402 - EX31_RS15570 0.38 -0.0 9,495 - EX31_RS15570 0.48 -0.0 9,565 + EX31_RS15570 0.56 -0.3 9,565 + EX31_RS15570 0.56 +0.4 9,566 - EX31_RS15570 0.56 +0.4 9,566 - EX31_RS15570 0.56 -0.3 9,566 - EX31_RS15570 0.56 +0.9 9,811 - EX31_RS15570 0.82 +0.3 9,815 - EX31_RS15570 0.82 -0.0 9,815 - EX31_RS15570 0.82 +1.2 9,815 - EX31_RS15570 0.82 +1.9 9,967 + -0.5 9,968 - -0.4 9,991 + +0.8
Or see this region's nucleotide sequence