Strain Fitness in Rahnella sp. WP5 around EX31_RS14405

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14400 and EX31_RS14405 overlap by 1 nucleotidesEX31_RS14405 and EX31_RS14410 are separated by 2 nucleotides EX31_RS14400: EX31_RS14400 - ADP-heptose--LPS heptosyltransferase RfaF, at 61,775 to 62,824 _RS14400 EX31_RS14405: EX31_RS14405 - lipopolysaccharide heptosyltransferase RfaC, at 62,824 to 63,807 _RS14405 EX31_RS14410: EX31_RS14410 - glycosyltransferase family 9 protein, at 63,810 to 64,907 _RS14410 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2 3at 61.905 kb on + strand, within EX31_RS14400at 61.905 kb on + strand, within EX31_RS14400at 61.905 kb on + strand, within EX31_RS14400at 61.926 kb on + strand, within EX31_RS14400at 61.926 kb on + strand, within EX31_RS14400at 61.927 kb on - strand, within EX31_RS14400at 61.927 kb on - strand, within EX31_RS14400at 62.015 kb on + strand, within EX31_RS14400at 62.015 kb on + strand, within EX31_RS14400at 62.015 kb on + strand, within EX31_RS14400at 62.178 kb on - strand, within EX31_RS14400at 62.253 kb on + strand, within EX31_RS14400at 62.284 kb on + strand, within EX31_RS14400at 62.306 kb on - strand, within EX31_RS14400at 62.372 kb on + strand, within EX31_RS14400at 62.372 kb on + strand, within EX31_RS14400at 62.575 kb on + strand, within EX31_RS14400at 62.688 kb on + strand, within EX31_RS14400at 62.688 kb on + strand, within EX31_RS14400at 62.688 kb on + strand, within EX31_RS14400at 62.689 kb on - strand, within EX31_RS14400at 62.689 kb on - strand, within EX31_RS14400at 62.710 kb on + strand, within EX31_RS14400at 62.711 kb on - strand, within EX31_RS14400at 62.755 kb on - strandat 62.761 kb on + strandat 63.171 kb on + strand, within EX31_RS14405at 63.206 kb on - strand, within EX31_RS14405at 63.310 kb on + strand, within EX31_RS14405at 63.310 kb on + strand, within EX31_RS14405at 63.310 kb on + strand, within EX31_RS14405at 63.315 kb on + strand, within EX31_RS14405at 63.743 kb on + strandat 63.743 kb on + strandat 63.816 kb on + strandat 63.816 kb on + strandat 63.816 kb on + strandat 63.816 kb on + strandat 63.816 kb on + strandat 63.816 kb on + strandat 63.816 kb on + strandat 63.816 kb on + strandat 63.817 kb on - strandat 63.817 kb on - strandat 63.825 kb on - strandat 63.898 kb on + strandat 63.898 kb on + strandat 63.898 kb on + strandat 63.899 kb on - strandat 63.899 kb on - strandat 63.929 kb on + strand, within EX31_RS14410at 63.940 kb on + strand, within EX31_RS14410at 63.953 kb on - strand, within EX31_RS14410at 63.978 kb on - strand, within EX31_RS14410at 64.022 kb on + strand, within EX31_RS14410at 64.022 kb on + strand, within EX31_RS14410at 64.023 kb on - strand, within EX31_RS14410at 64.023 kb on - strand, within EX31_RS14410at 64.023 kb on - strand, within EX31_RS14410at 64.023 kb on - strand, within EX31_RS14410at 64.023 kb on - strand, within EX31_RS14410at 64.027 kb on - strand, within EX31_RS14410at 64.027 kb on - strand, within EX31_RS14410at 64.103 kb on + strand, within EX31_RS14410at 64.103 kb on + strand, within EX31_RS14410at 64.103 kb on + strand, within EX31_RS14410at 64.104 kb on - strand, within EX31_RS14410at 64.104 kb on - strand, within EX31_RS14410at 64.104 kb on - strand, within EX31_RS14410at 64.104 kb on - strand, within EX31_RS14410at 64.107 kb on + strand, within EX31_RS14410at 64.107 kb on + strand, within EX31_RS14410at 64.108 kb on - strand, within EX31_RS14410at 64.122 kb on - strand, within EX31_RS14410at 64.140 kb on + strand, within EX31_RS14410at 64.141 kb on - strand, within EX31_RS14410at 64.141 kb on - strand, within EX31_RS14410at 64.154 kb on + strand, within EX31_RS14410at 64.166 kb on + strand, within EX31_RS14410at 64.166 kb on + strand, within EX31_RS14410at 64.166 kb on + strand, within EX31_RS14410at 64.167 kb on - strand, within EX31_RS14410at 64.167 kb on - strand, within EX31_RS14410at 64.185 kb on + strand, within EX31_RS14410at 64.185 kb on + strand, within EX31_RS14410at 64.185 kb on + strand, within EX31_RS14410at 64.185 kb on + strand, within EX31_RS14410at 64.185 kb on + strand, within EX31_RS14410at 64.186 kb on - strand, within EX31_RS14410at 64.186 kb on - strand, within EX31_RS14410at 64.186 kb on - strand, within EX31_RS14410at 64.187 kb on + strand, within EX31_RS14410at 64.187 kb on + strand, within EX31_RS14410at 64.188 kb on - strand, within EX31_RS14410at 64.188 kb on - strand, within EX31_RS14410at 64.193 kb on + strand, within EX31_RS14410at 64.193 kb on + strand, within EX31_RS14410at 64.194 kb on - strand, within EX31_RS14410at 64.194 kb on - strand, within EX31_RS14410at 64.201 kb on - strand, within EX31_RS14410at 64.259 kb on + strand, within EX31_RS14410at 64.259 kb on + strand, within EX31_RS14410at 64.272 kb on + strand, within EX31_RS14410at 64.272 kb on + strand, within EX31_RS14410at 64.273 kb on - strand, within EX31_RS14410at 64.277 kb on + strand, within EX31_RS14410at 64.277 kb on + strand, within EX31_RS14410at 64.277 kb on + strand, within EX31_RS14410at 64.277 kb on + strand, within EX31_RS14410at 64.277 kb on + strand, within EX31_RS14410at 64.278 kb on - strand, within EX31_RS14410at 64.311 kb on + strand, within EX31_RS14410at 64.311 kb on + strand, within EX31_RS14410at 64.311 kb on + strand, within EX31_RS14410at 64.312 kb on - strand, within EX31_RS14410at 64.312 kb on - strand, within EX31_RS14410at 64.313 kb on + strand, within EX31_RS14410at 64.314 kb on - strand, within EX31_RS14410at 64.316 kb on + strand, within EX31_RS14410at 64.316 kb on + strand, within EX31_RS14410at 64.317 kb on - strand, within EX31_RS14410at 64.317 kb on - strand, within EX31_RS14410at 64.317 kb on - strand, within EX31_RS14410at 64.317 kb on - strand, within EX31_RS14410at 64.317 kb on - strand, within EX31_RS14410at 64.343 kb on - strand, within EX31_RS14410at 64.416 kb on - strand, within EX31_RS14410at 64.416 kb on - strand, within EX31_RS14410at 64.422 kb on - strand, within EX31_RS14410at 64.422 kb on - strand, within EX31_RS14410at 64.449 kb on - strand, within EX31_RS14410at 64.460 kb on + strand, within EX31_RS14410at 64.489 kb on - strand, within EX31_RS14410at 64.518 kb on + strand, within EX31_RS14410at 64.518 kb on + strand, within EX31_RS14410at 64.518 kb on + strand, within EX31_RS14410at 64.518 kb on + strand, within EX31_RS14410at 64.518 kb on + strand, within EX31_RS14410at 64.518 kb on + strand, within EX31_RS14410at 64.519 kb on - strand, within EX31_RS14410at 64.519 kb on - strand, within EX31_RS14410at 64.519 kb on - strand, within EX31_RS14410at 64.519 kb on - strand, within EX31_RS14410at 64.566 kb on - strand, within EX31_RS14410at 64.582 kb on + strand, within EX31_RS14410at 64.622 kb on + strand, within EX31_RS14410at 64.622 kb on + strand, within EX31_RS14410at 64.622 kb on + strand, within EX31_RS14410at 64.623 kb on - strand, within EX31_RS14410at 64.623 kb on - strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.626 kb on + strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.627 kb on - strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.653 kb on + strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.654 kb on - strand, within EX31_RS14410at 64.684 kb on + strand, within EX31_RS14410at 64.684 kb on + strand, within EX31_RS14410at 64.685 kb on - strand, within EX31_RS14410at 64.685 kb on - strand, within EX31_RS14410at 64.685 kb on - strand, within EX31_RS14410at 64.685 kb on - strand, within EX31_RS14410at 64.685 kb on - strand, within EX31_RS14410at 64.709 kb on - strand, within EX31_RS14410at 64.728 kb on + strand, within EX31_RS14410at 64.728 kb on + strand, within EX31_RS14410at 64.729 kb on - strand, within EX31_RS14410at 64.729 kb on - strand, within EX31_RS14410at 64.729 kb on - strand, within EX31_RS14410at 64.729 kb on - strand, within EX31_RS14410at 64.729 kb on - strand, within EX31_RS14410at 64.781 kb on + strand, within EX31_RS14410at 64.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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61,905 + EX31_RS14400 0.12 +0.2
61,905 + EX31_RS14400 0.12 +1.2
61,905 + EX31_RS14400 0.12 -0.2
61,926 + EX31_RS14400 0.14 +1.6
61,926 + EX31_RS14400 0.14 +1.2
61,927 - EX31_RS14400 0.14 +0.0
61,927 - EX31_RS14400 0.14 +0.7
62,015 + EX31_RS14400 0.23 +2.1
62,015 + EX31_RS14400 0.23 +1.2
62,015 + EX31_RS14400 0.23 +1.3
62,178 - EX31_RS14400 0.38 +0.1
62,253 + EX31_RS14400 0.46 +1.5
62,284 + EX31_RS14400 0.48 +1.7
62,306 - EX31_RS14400 0.51 +0.1
62,372 + EX31_RS14400 0.57 -0.6
62,372 + EX31_RS14400 0.57 -0.0
62,575 + EX31_RS14400 0.76 +1.9
62,688 + EX31_RS14400 0.87 +1.1
62,688 + EX31_RS14400 0.87 +2.9
62,688 + EX31_RS14400 0.87 +1.9
62,689 - EX31_RS14400 0.87 +0.6
62,689 - EX31_RS14400 0.87 +0.9
62,710 + EX31_RS14400 0.89 +0.7
62,711 - EX31_RS14400 0.89 +0.9
62,755 - -0.7
62,761 + +1.1
63,171 + EX31_RS14405 0.35 +1.5
63,206 - EX31_RS14405 0.39 -0.2
63,310 + EX31_RS14405 0.49 +1.0
63,310 + EX31_RS14405 0.49 -0.9
63,310 + EX31_RS14405 0.49 -1.2
63,315 + EX31_RS14405 0.50 -1.4
63,743 + +0.3
63,743 + +0.3
63,816 + +0.5
63,816 + +0.7
63,816 + +0.3
63,816 + +1.2
63,816 + +1.2
63,816 + +1.4
63,816 + +0.7
63,816 + +1.7
63,817 - +0.7
63,817 - +1.3
63,825 - +1.0
63,898 + +0.2
63,898 + -0.4
63,898 + +1.5
63,899 - +0.4
63,899 - +1.3
63,929 + EX31_RS14410 0.11 +0.4
63,940 + EX31_RS14410 0.12 +0.9
63,953 - EX31_RS14410 0.13 -0.1
63,978 - EX31_RS14410 0.15 +1.0
64,022 + EX31_RS14410 0.19 -0.0
64,022 + EX31_RS14410 0.19 +1.0
64,023 - EX31_RS14410 0.19 +0.8
64,023 - EX31_RS14410 0.19 +0.5
64,023 - EX31_RS14410 0.19 +1.4
64,023 - EX31_RS14410 0.19 +0.7
64,023 - EX31_RS14410 0.19 +0.2
64,027 - EX31_RS14410 0.20 -0.8
64,027 - EX31_RS14410 0.20 +0.9
64,103 + EX31_RS14410 0.27 +0.4
64,103 + EX31_RS14410 0.27 +0.7
64,103 + EX31_RS14410 0.27 +0.3
64,104 - EX31_RS14410 0.27 +1.1
64,104 - EX31_RS14410 0.27 +1.2
64,104 - EX31_RS14410 0.27 -0.3
64,104 - EX31_RS14410 0.27 +0.7
64,107 + EX31_RS14410 0.27 +0.4
64,107 + EX31_RS14410 0.27 +0.4
64,108 - EX31_RS14410 0.27 +0.8
64,122 - EX31_RS14410 0.28 +0.6
64,140 + EX31_RS14410 0.30 +0.4
64,141 - EX31_RS14410 0.30 +0.2
64,141 - EX31_RS14410 0.30 +1.0
64,154 + EX31_RS14410 0.31 +0.7
64,166 + EX31_RS14410 0.32 +0.5
64,166 + EX31_RS14410 0.32 -0.2
64,166 + EX31_RS14410 0.32 +0.5
64,167 - EX31_RS14410 0.33 +0.8
64,167 - EX31_RS14410 0.33 -0.8
64,185 + EX31_RS14410 0.34 +0.5
64,185 + EX31_RS14410 0.34 +1.5
64,185 + EX31_RS14410 0.34 +1.1
64,185 + EX31_RS14410 0.34 +0.2
64,185 + EX31_RS14410 0.34 +0.4
64,186 - EX31_RS14410 0.34 +0.3
64,186 - EX31_RS14410 0.34 +0.5
64,186 - EX31_RS14410 0.34 +0.8
64,187 + EX31_RS14410 0.34 +0.5
64,187 + EX31_RS14410 0.34 +0.5
64,188 - EX31_RS14410 0.34 +1.1
64,188 - EX31_RS14410 0.34 +1.0
64,193 + EX31_RS14410 0.35 +0.8
64,193 + EX31_RS14410 0.35 +1.3
64,194 - EX31_RS14410 0.35 +0.3
64,194 - EX31_RS14410 0.35 +0.6
64,201 - EX31_RS14410 0.36 +0.7
64,259 + EX31_RS14410 0.41 +0.7
64,259 + EX31_RS14410 0.41 +0.7
64,272 + EX31_RS14410 0.42 +0.6
64,272 + EX31_RS14410 0.42 -0.0
64,273 - EX31_RS14410 0.42 -0.7
64,277 + EX31_RS14410 0.43 +0.3
64,277 + EX31_RS14410 0.43 +1.1
64,277 + EX31_RS14410 0.43 +0.1
64,277 + EX31_RS14410 0.43 +1.3
64,277 + EX31_RS14410 0.43 +0.7
64,278 - EX31_RS14410 0.43 +0.5
64,311 + EX31_RS14410 0.46 +1.1
64,311 + EX31_RS14410 0.46 -0.6
64,311 + EX31_RS14410 0.46 +0.2
64,312 - EX31_RS14410 0.46 +0.8
64,312 - EX31_RS14410 0.46 -1.4
64,313 + EX31_RS14410 0.46 +0.0
64,314 - EX31_RS14410 0.46 +0.6
64,316 + EX31_RS14410 0.46 +1.3
64,316 + EX31_RS14410 0.46 +0.8
64,317 - EX31_RS14410 0.46 +1.1
64,317 - EX31_RS14410 0.46 +1.5
64,317 - EX31_RS14410 0.46 +0.1
64,317 - EX31_RS14410 0.46 +1.9
64,317 - EX31_RS14410 0.46 +0.8
64,343 - EX31_RS14410 0.49 +1.4
64,416 - EX31_RS14410 0.55 +0.1
64,416 - EX31_RS14410 0.55 +0.7
64,422 - EX31_RS14410 0.56 +2.4
64,422 - EX31_RS14410 0.56 +1.8
64,449 - EX31_RS14410 0.58 +0.5
64,460 + EX31_RS14410 0.59 +0.4
64,489 - EX31_RS14410 0.62 +0.8
64,518 + EX31_RS14410 0.64 -0.4
64,518 + EX31_RS14410 0.64 +1.6
64,518 + EX31_RS14410 0.64 +1.2
64,518 + EX31_RS14410 0.64 +0.6
64,518 + EX31_RS14410 0.64 +0.4
64,518 + EX31_RS14410 0.64 +0.5
64,519 - EX31_RS14410 0.65 +1.5
64,519 - EX31_RS14410 0.65 +0.6
64,519 - EX31_RS14410 0.65 +0.3
64,519 - EX31_RS14410 0.65 +1.5
64,566 - EX31_RS14410 0.69 +0.6
64,582 + EX31_RS14410 0.70 +0.1
64,622 + EX31_RS14410 0.74 +1.5
64,622 + EX31_RS14410 0.74 +1.1
64,622 + EX31_RS14410 0.74 +0.7
64,623 - EX31_RS14410 0.74 +1.8
64,623 - EX31_RS14410 0.74 +0.9
64,626 + EX31_RS14410 0.74 -0.1
64,626 + EX31_RS14410 0.74 +0.9
64,626 + EX31_RS14410 0.74 +1.6
64,626 + EX31_RS14410 0.74 +1.0
64,626 + EX31_RS14410 0.74 +0.8
64,626 + EX31_RS14410 0.74 +0.5
64,626 + EX31_RS14410 0.74 +0.7
64,626 + EX31_RS14410 0.74 +1.6
64,626 + EX31_RS14410 0.74 +0.9
64,626 + EX31_RS14410 0.74 +0.5
64,626 + EX31_RS14410 0.74 +0.8
64,626 + EX31_RS14410 0.74 +0.4
64,626 + EX31_RS14410 0.74 +0.7
64,626 + EX31_RS14410 0.74 +0.1
64,626 + EX31_RS14410 0.74 +0.4
64,626 + EX31_RS14410 0.74 +0.7
64,626 + EX31_RS14410 0.74 +0.2
64,626 + EX31_RS14410 0.74 +0.3
64,626 + EX31_RS14410 0.74 +1.4
64,626 + EX31_RS14410 0.74 +0.5
64,626 + EX31_RS14410 0.74 +0.1
64,627 - EX31_RS14410 0.74 +0.9
64,627 - EX31_RS14410 0.74 +1.5
64,627 - EX31_RS14410 0.74 +0.3
64,627 - EX31_RS14410 0.74 +1.8
64,627 - EX31_RS14410 0.74 +0.3
64,627 - EX31_RS14410 0.74 +0.1
64,627 - EX31_RS14410 0.74 +0.6
64,627 - EX31_RS14410 0.74 +0.5
64,627 - EX31_RS14410 0.74 +0.9
64,627 - EX31_RS14410 0.74 +0.2
64,627 - EX31_RS14410 0.74 +0.4
64,627 - EX31_RS14410 0.74 +1.5
64,627 - EX31_RS14410 0.74 +1.0
64,627 - EX31_RS14410 0.74 -0.1
64,627 - EX31_RS14410 0.74 +0.8
64,627 - EX31_RS14410 0.74 +0.2
64,627 - EX31_RS14410 0.74 +0.1
64,653 + EX31_RS14410 0.77 -0.5
64,653 + EX31_RS14410 0.77 +0.3
64,653 + EX31_RS14410 0.77 +1.4
64,653 + EX31_RS14410 0.77 +0.4
64,653 + EX31_RS14410 0.77 +0.5
64,653 + EX31_RS14410 0.77 -0.2
64,653 + EX31_RS14410 0.77 +1.0
64,653 + EX31_RS14410 0.77 +1.4
64,654 - EX31_RS14410 0.77 +1.0
64,654 - EX31_RS14410 0.77 +1.0
64,654 - EX31_RS14410 0.77 +0.7
64,654 - EX31_RS14410 0.77 -2.2
64,654 - EX31_RS14410 0.77 +1.9
64,654 - EX31_RS14410 0.77 -0.2
64,654 - EX31_RS14410 0.77 +0.9
64,654 - EX31_RS14410 0.77 +0.8
64,684 + EX31_RS14410 0.80 +0.4
64,684 + EX31_RS14410 0.80 +1.1
64,685 - EX31_RS14410 0.80 +0.5
64,685 - EX31_RS14410 0.80 +1.4
64,685 - EX31_RS14410 0.80 +1.1
64,685 - EX31_RS14410 0.80 +1.0
64,685 - EX31_RS14410 0.80 +1.1
64,709 - EX31_RS14410 0.82 +1.0
64,728 + EX31_RS14410 0.84 +0.7
64,728 + EX31_RS14410 0.84 +0.1
64,729 - EX31_RS14410 0.84 +1.2
64,729 - EX31_RS14410 0.84 +1.4
64,729 - EX31_RS14410 0.84 +0.7
64,729 - EX31_RS14410 0.84 +0.3
64,729 - EX31_RS14410 0.84 +0.5
64,781 + EX31_RS14410 0.88 +0.6
64,798 - +0.9

Or see this region's nucleotide sequence